-
1
-
-
35349003200
-
Bacterial pathogenomics
-
Pallen MJ, Wren BW. 2007 Bacterial pathogenomics. Nature 449, 835-842. (doi:10.1038/nature06248)
-
(2007)
Nature
, vol.449
, pp. 835-842
-
-
Pallen, M.J.1
Wren, B.W.2
-
2
-
-
84958178396
-
Within-host evolution of bacterial pathogens. Nat
-
Didelot X, Walker AS, Peto TE, Crook DW, Wilson DJ. 2016 Within-host evolution of bacterial pathogens. Nat. Rev. Microbiol. 14, 150-162. (doi:10.1038/nrmicro.2015.13)
-
(2016)
Rev. Microbiol
, vol.14
, pp. 150-162
-
-
Didelot, X.1
Walker, A.S.2
Peto, T.E.3
Crook, D.W.4
Wilson, D.J.5
-
3
-
-
84958234886
-
Add, stir and reduce’: Yersinia spp. as model bacteria for pathogen evolution
-
McNally A, Thomson NR, Reuter S, Wren BW. 2016 ‘Add, stir and reduce’: Yersinia spp. as model bacteria for pathogen evolution. Nat. Rev. Microbiol. 14, 177-190. (doi:10.1038/nrmicro.2015.29)
-
(2016)
Nat. Rev. Microbiol
, vol.14
, pp. 177-190
-
-
McNally, A.1
Thomson, N.R.2
Reuter, S.3
Wren, B.W.4
-
4
-
-
84961052338
-
Metabolic crosstalk between host and pathogen: Sensing, adapting and competing
-
Olive AJ, Sassetti CM. 2016 Metabolic crosstalk between host and pathogen: sensing, adapting and competing. Nat. Rev. Microbiol. 14, 221-234. (doi:10.1038/nrmicro.2016.12)
-
(2016)
Nat. Rev. Microbiol
, vol.14
, pp. 221-234
-
-
Olive, A.J.1
Sassetti, C.M.2
-
5
-
-
84880876168
-
Approaches to querying bacterial genomes with transposoninsertion sequencing
-
Barquist L, Boinett CJ, Cain AK. 2013 Approaches to querying bacterial genomes with transposoninsertion sequencing. RNA Biol. 10, 1161-1169. (doi:10.4161/rna.24765)
-
(2013)
RNA Biol
, vol.10
, pp. 1161-1169
-
-
Barquist, L.1
Boinett, C.J.2
Cain, A.K.3
-
6
-
-
84879413726
-
Transposon insertion sequencing: A new tool for systems-level analysis of microorganisms
-
van Opijnen T, Camilli A. 2013 Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms. Nat. Rev. Microbiol. 11, 435-442. (doi:10.1038/nrmicro3033)
-
(2013)
Nat. Rev. Microbiol
, vol.11
, pp. 435-442
-
-
Van Opijnen, T.1
Camilli, A.2
-
7
-
-
84940528989
-
High-throughput bacterial functional genomics in the sequencing era
-
Gray AN, Koo B-M, Shiver AL, Peters JM, Osadnik H, Gross CA. 2015 High-throughput bacterial functional genomics in the sequencing era. Curr. Opin. Microbiol. 27, 86-95. (doi:10.1016/j.mib.2015.07.012)
-
(2015)
Curr. Opin. Microbiol
, vol.27
, pp. 86-95
-
-
Gray, A.N.1
Koo, B.-M.2
Shiver, A.L.3
Peters, J.M.4
Osadnik, H.5
Gross, C.A.6
-
8
-
-
0029117137
-
Simultaneous identification of bacterial virulence genes by negative selection
-
Hensel M, Shea JE, Gleeson C, Jones MD, Dalton E, Holden DW. 1995 Simultaneous identification of bacterial virulence genes by negative selection. Science 269, 400-403. (doi:10.1126/science.7618105)
-
(1995)
Science
, vol.269
, pp. 400-403
-
-
Hensel, M.1
Shea, J.E.2
Gleeson, C.3
Jones, M.D.4
Dalton, E.5
Holden, D.W.6
-
9
-
-
0029913901
-
Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimurium
-
Shea JE, Hensel M, Gleeson C, Holden DW. 1996 Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimurium. Proc. Natl Acad. Sci. USA 93, 2593-2597. (doi:10.1073/pnas.93.6.2593)
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2593-2597
-
-
Shea, J.E.1
Hensel, M.2
Gleeson, C.3
Holden, D.W.4
-
10
-
-
0029817221
-
Identification of a pathogenicity island required for Salmonella survival in host cells
-
Ochman H, Soncini FC, Solomon F, Groisman EA. 1996 Identification of a pathogenicity island required for Salmonella survival in host cells. Proc. Natl Acad. Sci. USA 93, 7800-7804. (doi:10.1073/pnas.93.15.7800)
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 7800-7804
-
-
Ochman, H.1
Soncini, F.C.2
Solomon, F.3
Groisman, E.A.4
-
11
-
-
84860521139
-
Functions of the Salmonella pathogenicity island 2 (SPI-2 type III secretion system effectors
-
Figueira R, Holden DW. 2012 Functions of the Salmonella pathogenicity island 2 (SPI-2 type III secretion system effectors. Microbiology 158, 1147-1161. (doi:10.1099/mic.0.058115-0)
-
(2012)
Microbiology
, vol.158
, pp. 1147-1161
-
-
Figueira, R.1
Holden, D.W.2
-
12
-
-
84925148541
-
Salmonellae interactions with host processes. Nat
-
LaRock DL, Chaudhary A, Miller SI. 2015 Salmonellae interactions with host processes. Nat. Rev. Microbiol. 13, 191-205. (doi:10.1038/nrmicro3420)
-
(2015)
Rev. Microbiol
, vol.13
, pp. 191-205
-
-
Larock, D.L.1
Chaudhary, A.2
Miller, S.I.3
-
13
-
-
84880080554
-
Identification of salmonella pathogenicity island-2 type III secretion system effectors involved in intramacrophage replication of S. Enterica serovar typhimurium: Implications for rational vaccine design
-
Figueira R, Watson KG, Holden DW, Helaine S. 2013 Identification of salmonella pathogenicity island-2 type III secretion system effectors involved in intramacrophage replication of S. enterica serovar typhimurium: implications for rational vaccine design. MBio 4, e00065. (doi:10.1128/mBio.00065-13)
-
(2013)
Mbio
, vol.4
-
-
Figueira, R.1
Watson, K.G.2
Holden, D.W.3
Helaine, S.4
-
14
-
-
84876848287
-
Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals
-
Chaudhuri RR et al. 2013 Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals. PLoS Genet. 9, e1003456. (doi:10.1371/journal.pgen.1003456)
-
(2013)
Plos Genet
, vol.9
-
-
Chaudhuri, R.R.1
-
15
-
-
33645079930
-
Modelling infectious disease: Time to think outside the box? Nat
-
Wiles S, Hanage WP, Frankel G, Robertson B. 2006 Modelling infectious disease: time to think outside the box? Nat. Rev. Microbiol. 4, 307-312. (doi:10.1038/nrmicro1386)
-
(2006)
Rev. Microbiol
, vol.4
, pp. 307-312
-
-
Wiles, S.1
Hanage, W.P.2
Frankel, G.3
Robertson, B.4
-
16
-
-
79955593196
-
How to become a top model: Impact of animal experimentation on human Salmonella disease research
-
Tsolis RM, Xavier MN, Santos RL, Bäumler AJ. 2011 How to become a top model: impact of animal experimentation on human Salmonella disease research. Infect. Immun. 79, 1806-1814. (doi:10.1128/IAI.01369-10)
-
(2011)
Infect. Immun
, vol.79
, pp. 1806-1814
-
-
Tsolis, R.M.1
Xavier, M.N.2
Santos, R.L.3
Bäumler, A.J.4
-
18
-
-
84964262313
-
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
-
Westermann AJ et al. 2016 Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529, 496-501. (doi:10.1038/nature16547)
-
(2016)
Nature
, vol.529
, pp. 496-501
-
-
Westermann, A.J.1
-
19
-
-
84945484697
-
Small RNAs in bacteria and archaea: Who they are, what they do, and how they do it
-
Wagner EGH, Romby P. 2015 Small RNAs in bacteria and archaea: who they are, what they do, and how they do it. Adv. Genet. 90, 133-208. (doi:10.1016/bs.adgen.2015.05.001)
-
(2015)
Adv. Genet
, vol.90
, pp. 133-208
-
-
Wagner, E.1
Romby, P.2
-
20
-
-
84863924309
-
Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
-
Gottesman S, Storz G. 2011 Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb. Perspect. Biol. 3, a003798. (doi:10.1101/cshperspect.a003798)
-
(2011)
Cold Spring Harb. Perspect. Biol
, vol.3
-
-
Gottesman, S.1
Storz, G.2
-
21
-
-
84860720471
-
The non-coding RNA world of the bacterial pathogen Listeria monocytogenes
-
Mellin JR, Cossart P. 2012 The non-coding RNA world of the bacterial pathogen Listeria monocytogenes. RNA Biol. 9, 372-378. (doi:10.4161/rna.19235)
-
(2012)
RNA Biol
, vol.9
, pp. 372-378
-
-
Mellin, J.R.1
Cossart, P.2
-
22
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
Toledo-Arana A et al. 2009 The Listeria transcriptional landscape from saprophytism to virulence. Nature 459, 950-956. (doi:10.1038/nature08080)
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
-
23
-
-
84860769484
-
Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus
-
Romilly C, Caldelari I, Parmentier D, Lioliou E, Romby P, Fechter P. 2012 Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus. RNA Biol. 9, 402-413. (doi:10.4161/rna.20103)
-
(2012)
RNA Biol
, vol.9
, pp. 402-413
-
-
Romilly, C.1
Caldelari, I.2
Parmentier, D.3
Lioliou, E.4
Romby, P.5
Fechter, P.6
-
24
-
-
84864590175
-
Control of virulence by small RNAs in Streptococcus pneumoniae
-
Mann B et al. 2012 Control of virulence by small RNAs in Streptococcus pneumoniae. PLoS Pathog. 8, e1002788. (doi:10.1371/journal.ppat.1002788)
-
(2012)
Plos Pathog
, pp. 8
-
-
Mann, B.1
-
25
-
-
84963595083
-
Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
-
Holmqvist E, Wright PR, Li L, Bischler T, Barquist L, Reinhardt R, Backofen R, Vogel J. 2016 Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO J. 35, 991-1011. (doi:10.15252/embj.201593360)
-
(2016)
EMBO J
, vol.35
, pp. 991-1011
-
-
Holmqvist, E.1
Wright, P.R.2
Li, L.3
Bischler, T.4
Barquist, L.5
Reinhardt, R.6
Backofen, R.7
Vogel, J.8
-
26
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J, Luisi BF. 2011 Hfq and its constellation of RNA. Nat. Rev. Microbiol. 9, 578-589. (doi:10.1038/nrmicro2615)
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
27
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
Sittka A, Pfeiffer V, Tedin K, Vogel J. 2007 The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol. Microbiol. 63, 193-217. (doi:10.1111/j.1365-2958.2006.05489.x)
-
(2007)
Mol. Microbiol
, vol.63
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
28
-
-
62849101179
-
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: Implications for virulence and global protein translation
-
Ansong C et al. 2009 Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS ONE 4, e4809. (doi:10.1371/journal.pone.0004809)
-
(2009)
Plos ONE
, pp. 4
-
-
Ansong, C.1
-
29
-
-
84860774336
-
SRNAs and the virulence of Salmonella enterica serovar Typhimurium
-
Hébrard M, Krö ger C, Srikumar S, Colgan A, Händler K, Hinton JCD. 2012 sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol. 9, 437-445. (doi:10.4161/rna.20480)
-
(2012)
RNA Biol
, vol.9
, pp. 437-445
-
-
Hébrard, M.1
Krö Ger, C.2
Srikumar, S.3
Colgan, A.4
Händler, K.5
Hinton, J.C.D.6
-
30
-
-
84948990820
-
RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella typhimurium
-
Srikumar S, Krö ger C, Hébrard M, Colgan A, Owen SV, Sivasankaran SK, Cameron ADS, Hokamp K, Hinton JCD. 2015 RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella typhimurium. PLoS Pathog. 11, e1005262. (doi:10.1371/journal.ppat.1005262)
-
(2015)
Plos Pathog
, vol.11
-
-
Srikumar, S.1
Krö Ger, C.2
Hébrard, M.3
Colgan, A.4
Owen, S.V.5
Sivasankaran, S.K.6
Cameron, A.7
Hokamp, K.8
Hinton, J.C.D.9
-
31
-
-
84860757645
-
Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells
-
Ortega AD, Gonzalo-Asensio J, García-del Portillo F. 2012 Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells. RNA Biol. 9, 469-488. (doi:10.4161/rna.19317)
-
(2012)
RNA Biol
, vol.9
, pp. 469-488
-
-
Ortega, A.D.1
Gonzalo-Asensio, J.2
García-Del Portillo, F.3
-
32
-
-
84861442326
-
Regulating iron storage and metabolism with RNA: An overview of posttranscriptional controls of intracellular iron homeostasis. Wiley Interdiscip
-
Salvail H, Massé E. 2012 Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis. Wiley Interdiscip. Rev. RNA 3, 26-36. (doi:10.1002/wrna.102)
-
(2012)
Rev. RNA
, vol.3
, pp. 26-36
-
-
Salvail, H.1
Massé, E.2
-
33
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA. 2011 Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc. Natl Acad. Sci. USA 108, 12875-12880. (doi:10.1073/pnas.1109379108)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
Vogel, J.4
Gross, C.A.5
-
34
-
-
84948763782
-
Accelerating discovery and functional analysis of small RNAs with new technologies
-
Barquist L, Vogel J. 2015 Accelerating discovery and functional analysis of small RNAs with new technologies. Annu. Rev. Genet. 49, 367-394. (doi:10.1146/annurev-genet-112414-054804)
-
(2015)
Annu. Rev. Genet
, vol.49
, pp. 367-394
-
-
Barquist, L.1
Vogel, J.2
-
35
-
-
67650727366
-
VARNA: Interactive drawing and editing of the RNA secondary structure
-
Darty K, Denise A, Ponty Y. 2009 VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25, 1974-1975. (doi:10.1093/bioinformatics/btp250)
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
36
-
-
84902678434
-
Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions
-
Peer A, Margalit H. 2014 Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions. RNA 20, 994-1003. (doi:10.1261/rna.043133.113)
-
(2014)
RNA
, vol.20
, pp. 994-1003
-
-
Peer, A.1
Margalit, H.2
-
37
-
-
84908336343
-
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
-
Lindgreen S et al. 2014 Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling. PLoS Comput. Biol. 10, e1003907. (doi:10.1371/journal.pcbi.1003907)
-
(2014)
Plos Comput. Biol
, pp. 10
-
-
Lindgreen, S.1
-
38
-
-
0034610270
-
Pushing the limits of cellular microbiology: Microarrays to study bacteria-host cell intimate contacts
-
Rappuoli R. 2000 Pushing the limits of cellular microbiology: microarrays to study bacteria-host cell intimate contacts. Proc. Natl Acad. Sci. USA 97, 13467-13469. (doi:10.1073/pnas.010505497)
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13467-13469
-
-
Rappuoli, R.1
-
39
-
-
0030592988
-
Cellular microbiology emerging
-
Cossart P, Boquet P, Normark S, Rappuoli R. 1996 Cellular microbiology emerging. Science 271, 315-316. (doi:10.1126/science.271.5247.315)
-
(1996)
Science
, vol.271
, pp. 315-316
-
-
Cossart, P.1
Boquet, P.2
Normark, S.3
Rappuoli, R.4
-
40
-
-
0034107833
-
How the host ‘sees’ pathogens: Global gene expression responses to infection
-
Manger ID, Relman DA. 2000 How the host ‘sees’ pathogens: global gene expression responses to infection. Curr. Opin. Immunol. 12, 215-218. (doi:10.1016/S0952-7915(9900077-1)
-
(2000)
Curr. Opin. Immunol
, vol.12
, pp. 215-218
-
-
Manger, I.D.1
Relman, D.A.2
-
41
-
-
2942560683
-
Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection
-
Hinton JCD, Hautefort I, Eriksson S, Thompson A, Rhen M. 2004 Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection. Curr. Opin. Microbiol. 7, 277-282. (doi:10.1016/j.mib.2004.04.009)
-
(2004)
Curr. Opin. Microbiol
, vol.7
, pp. 277-282
-
-
Hinton, J.1
Hautefort, I.2
Eriksson, S.3
Thompson, A.4
Rhen, M.5
-
42
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. 2009 RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63. (doi:10.1038/nrg2484)
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
43
-
-
84891841088
-
Simultaneous transcriptional profiling of bacteria and their host cells
-
Humphrys MS et al. 2013 Simultaneous transcriptional profiling of bacteria and their host cells. PLoS ONE 8, e80597. (doi:10.1371/journal.pone.0080597)
-
(2013)
Plos ONE
, pp. 8
-
-
Humphrys, M.S.1
-
44
-
-
84952803151
-
Dual RNA-seq of nontypeable haemophilus influenzae and host cell transcriptomes reveals novel insights into hostpathogen cross talk
-
Baddal B et al. 2015 Dual RNA-seq of nontypeable haemophilus influenzae and host cell transcriptomes reveals novel insights into hostpathogen cross talk. MBio 6, e01765-15. (doi:10.1128/mBio.01765-15)
-
(2015)
Mbio
, vol.6
, pp. e01765-e01715
-
-
Baddal, B.1
-
45
-
-
84859988230
-
Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
-
Corcoran CP, Podkaminski D, Papenfort K, Urban JH, Hinton JCD, Vogel J. 2012 Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Mol. Microbiol. 84, 428-445. (doi:10.1111/j.1365-2958.2012.08031.x)
-
(2012)
Mol. Microbiol
, vol.84
, pp. 428-445
-
-
Corcoran, C.P.1
Podkaminski, D.2
Papenfort, K.3
Urban, J.H.4
Hinton, J.5
Vogel, J.6
-
46
-
-
63749110404
-
Control of Salmonella pathogenicity island-2 gene expression
-
Fass E, Groisman EA. 2009 Control of Salmonella pathogenicity island-2 gene expression. Curr. Opin. Microbiol. 12, 199-204. (doi:10.1016/j.mib.2009.01.004)
-
(2009)
Curr. Opin. Microbiol
, vol.12
, pp. 199-204
-
-
Fass, E.1
Groisman, E.A.2
-
47
-
-
80052337291
-
Salmonella bongori provides insights into the evolution of the Salmonellae
-
Fookes M et al. 2011 Salmonella bongori provides insights into the evolution of the Salmonellae. PLoS Pathog. 7, e1002191. (doi:10.1371/journal.ppat.1002191)
-
(2011)
Plos Pathog
, pp. 7
-
-
Fookes, M.1
-
48
-
-
79251559383
-
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
-
Beisel CL, Storz G. 2011 The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Mol. Cell 41, 286-297. (doi:10.1016/j.molcel.2010.12.027)
-
(2011)
Mol. Cell
, vol.41
, pp. 286-297
-
-
Beisel, C.L.1
Storz, G.2
-
49
-
-
76849115266
-
Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response
-
Tu KC, Long T, Svenningsen SL, Wingreen NS, Bassler BL. 2010 Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Mol. Cell 37, 567-579. (doi:10.1016/j.molcel.2010.01.022)
-
(2010)
Mol. Cell
, vol.37
, pp. 567-579
-
-
Tu, K.C.1
Long, T.2
Svenningsen, S.L.3
Wingreen, N.S.4
Bassler, B.L.5
-
50
-
-
84961392965
-
Expression of IroN, the salmochelin siderophore receptor, requires mRNA activation by RyhB small RNA homologues
-
Balbontín R, Villagra N, Pardos de la Gándara M, Mora G, Figueroa-Bossi N, Bossi L. 2016 Expression of IroN, the salmochelin siderophore receptor, requires mRNA activation by RyhB small RNA homologues. Mol. Microbiol. 100, 139-155. (doi:10.1111/mmi.13307)
-
(2016)
Mol. Microbiol
, vol.100
, pp. 139-155
-
-
Balbontín, R.1
Villagra, N.2
Pardos De La Gándara, M.3
Mora, G.4
Figueroa-Bossi, N.5
Bossi, L.6
-
51
-
-
41849139346
-
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
-
Padalon-Brauch G, Hershberg R, Elgrably-Weiss M, Baruch K, Rosenshine I, Margalit H, Altuvia S. 2008 Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res. 36, 1913-1927. (doi:10.1093/nar/gkn050)
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1913-1927
-
-
Padalon-Brauch, G.1
Hershberg, R.2
Elgrably-Weiss, M.3
Baruch, K.4
Rosenshine, I.5
Margalit, H.6
Altuvia, S.7
-
52
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
Massé E, Gottesman S. 2002 A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl Acad. Sci. USA 99, 4620-4625. (doi:10.1073/pnas.032066599)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 4620-4625
-
-
Massé, E.1
Gottesman, S.2
-
53
-
-
33645066654
-
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol
-
Guillier M, Gottesman S. 2006 Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol. Microbiol. 59, 231-247. (doi:10.1111/j.1365-2958.2005.04929.x)
-
(2006)
Microbiol
, vol.59
, pp. 231-247
-
-
Guillier, M.1
Gottesman, S.2
-
54
-
-
77953120292
-
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
-
Holmqvist E, Reimegård J, Sterk M, Grantcharova N, Rö mling U, Wagner EGH. 2010 Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J. 29, 1840-1850. (doi:10.1038/emboj.2010.73)
-
(2010)
EMBO J
, vol.29
, pp. 1840-1850
-
-
Holmqvist, E.1
Reimegård, J.2
Sterk, M.3
Grantcharova, N.4
Rö Mling, U.5
Wagner, E.G.H.6
-
55
-
-
84875751957
-
An RNA degradation machine sculpted by Ro autoantigen and noncoding RNA
-
Chen X, Taylor DW, Fowler CC, Galan JE, Wang H-W, Wolin SL. 2013 An RNA degradation machine sculpted by Ro autoantigen and noncoding RNA. Cell 153, 166-177. (doi:10.1016/j.cell.2013.02.037)
-
(2013)
Cell
, vol.153
, pp. 166-177
-
-
Chen, X.1
Taylor, D.W.2
Fowler, C.C.3
Galan, J.E.4
Wang, H.-W.5
Wolin, S.L.6
-
56
-
-
84964438057
-
The TraDIS toolkit: Sequencing and analysis for dense transposon mutant libraries
-
Barquist L et al. 2016 The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinformatics 32, 1109-1111. (doi:10.1093/bioinformatics/btw022)
-
(2016)
Bioinformatics
, vol.32
, pp. 1109-1111
-
-
Barquist, L.1
-
57
-
-
84877290776
-
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
-
Barquist L, Langridge GC, Turner DJ, Phan M-D, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP. 2013 A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Res. 41, 4549-4564. (doi:10.1093/nar/gkt148)
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4549-4564
-
-
Barquist, L.1
Langridge, G.C.2
Turner, D.J.3
Phan, M.-D.4
Turner, A.K.5
Bateman, A.6
Parkhill, J.7
Wain, J.8
Gardner, P.P.9
-
58
-
-
84919665918
-
Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis
-
Maier L et al. 2014 Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis. PLoS Pathog. 10, e1004557. (doi:10.1371/journal.ppat.1004557)
-
(2014)
Plos Pathog
, pp. 10
-
-
Maier, L.1
-
59
-
-
84923852105
-
Sequence tag-based analysis of microbial population dynamics
-
Abel S, Abel zur Wiesch P, Chang H-H, Davis BM, Lipsitch M, Waldor MK. 2015 Sequence tag-based analysis of microbial population dynamics. Nat. Methods 12, 223-226, 3 p following 226. (doi:10.1038/nmeth.3253)
-
(2015)
Nat. Methods
, vol.12
, pp. 223-226
-
-
Abel, S.1
Abel Zur Wiesch, P.2
Chang, H.-H.3
Davis, B.M.4
Lipsitch, M.5
Waldor, M.K.6
-
60
-
-
33645777008
-
Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse
-
Lawley TD, Chan K, Thompson LJ, Kim CC, Govoni GR, Monack DM. 2006 Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse. PLoS Pathog. 2, e11. (doi:10.1371/journal.ppat.0020011)
-
(2006)
Plos Pathog
, pp. 2
-
-
Lawley, T.D.1
Chan, K.2
Thompson, L.J.3
Kim, C.C.4
Govoni, G.R.5
Monack, D.M.6
-
61
-
-
84890266225
-
Tn-Seq analysis of Vibrio cholerae intestinal colonization reveals a role for T6SS-mediated antibacterial activity in the host
-
Fu Y, Waldor MK, Mekalanos JJ. 2013 Tn-Seq analysis of Vibrio cholerae intestinal colonization reveals a role for T6SS-mediated antibacterial activity in the host. Cell Host Microbe 14, 652-663. (doi:10.1016/j.chom.2013.11.001)
-
(2013)
Cell Host Microbe
, vol.14
, pp. 652-663
-
-
Fu, Y.1
Waldor, M.K.2
Mekalanos, J.J.3
-
62
-
-
84892881766
-
Gene fitness landscapes of Vibrio cholerae at important stages of its life cycle
-
Kamp HD, Patimalla-Dipali B, Lazinski DW, Wallace-Gadsden F, Camilli A. 2013 Gene fitness landscapes of Vibrio cholerae at important stages of its life cycle. PLoS Pathog. 9, e1003800. (doi:10.1371/journal.ppat.1003800)
-
(2013)
Plos Pathog
, pp. 9
-
-
Kamp, H.D.1
Patimalla-Dipali, B.2
Lazinski, D.W.3
Wallace-Gadsden, F.4
Camilli, A.5
-
63
-
-
84866158013
-
Identification of MrtAB, an ABC transporter specifically required for Yersinia pseudotuberculosis to colonize the mesenteric lymph nodes
-
Crimmins GT, Mohammadi S, Green ER, Bergman MA, Isberg RR, Mecsas J. 2012 Identification of MrtAB, an ABC transporter specifically required for Yersinia pseudotuberculosis to colonize the mesenteric lymph nodes. PLoS Pathog. 8, e1002828. (doi:10.1371/journal.ppat.1002828)
-
(2012)
Plos Pathog
, pp. 8
-
-
Crimmins, G.T.1
Mohammadi, S.2
Green, E.R.3
Bergman, M.A.4
Isberg, R.R.5
Mecsas, J.6
-
64
-
-
84870479250
-
A fine scale phenotype-genotype virulence map of a bacterial pathogen
-
van Opijnen T, Camilli A. 2012 A fine scale phenotype-genotype virulence map of a bacterial pathogen. Genome Res. 22, 2541-2551. (doi:10.1101/gr.137430.112)
-
(2012)
Genome Res
, vol.22
, pp. 2541-2551
-
-
Van Opijnen, T.1
Camilli, A.2
-
65
-
-
0343517154
-
Salmonella maintains the integrity of its intracellular vacuole through the action of SifA
-
Beuzon CR, Méresse S, Unsworth KE, Ruíz-Albert J, Garvis S, Waterman SR, Ryder TA, Boucrot E, Holden DW. 2000 Salmonella maintains the integrity of its intracellular vacuole through the action of SifA. EMBO J. 19, 3235-3249. (doi:10.1093/emboj/19.13.3235)
-
(2000)
EMBO J.
, vol.19
, pp. 3235-3249
-
-
Beuzon, C.R.1
Méresse, S.2
Unsworth, K.E.3
Ruíz-Albert, J.4
Garvis, S.5
Waterman, S.R.6
Ryder, T.A.7
Boucrot, E.8
Holden, D.W.9
-
66
-
-
84908272006
-
Genome-wide mutant fitness profiling identifies nutritional requirements for optimal growth of Yersinia pestis in deep tissue
-
Palace SG, Proulx MK, Lu S, Baker RE, Goguen JD. 2014 Genome-wide mutant fitness profiling identifies nutritional requirements for optimal growth of Yersinia pestis in deep tissue. MBio 5. e01385-14. (doi:10.1128/mBio.01385-14)
-
(2014)
Mbio
, vol.5
, pp. e01385-e01414
-
-
Palace, S.G.1
Proulx, M.K.2
Lu, S.3
Baker, R.E.4
Goguen, J.D.5
-
67
-
-
70349611730
-
Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
-
van Opijnen T, Bodi KL, Camilli A. 2009 Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat. Methods 6, 767-772. (doi:10.1038/nmeth.1377)
-
(2009)
Nat. Methods
, vol.6
, pp. 767-772
-
-
Van Opijnen, T.1
Bodi, K.L.2
Camilli, A.3
-
68
-
-
84920911067
-
Release of nonstop ribosomes is essential
-
Feaga HA, Viollier PH, Keiler KC. 2014 Release of nonstop ribosomes is essential. MBio 5, e01916. (doi:10.1128/mBio.01916-14)
-
(2014)
Mbio
, pp. 5
-
-
Feaga, H.A.1
Viollier, P.H.2
Keiler, K.C.3
-
69
-
-
33746791191
-
Characterization of mycobacterial virulence genes through genetic interaction mapping
-
Joshi SM, Pandey AK, Capite N, Fortune SM, Rubin EJ, Sassetti CM. 2006 Characterization of mycobacterial virulence genes through genetic interaction mapping. Proc. Natl Acad. Sci. USA 103, 11760-11765. (doi:10.1073/pnas.0603179103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 11760-11765
-
-
Joshi, S.M.1
Pandey, A.K.2
Capite, N.3
Fortune, S.M.4
Rubin, E.J.5
Sassetti, C.M.6
-
70
-
-
84877060695
-
High-throughput approaches to understanding gene function and mapping network architecture in bacteria
-
Brochado AR, Typas A. 2013 High-throughput approaches to understanding gene function and mapping network architecture in bacteria. Curr. Opin. Microbiol. 16, 199-206. (doi:10.1016/j.mib.2013.01.008)
-
(2013)
Curr. Opin. Microbiol
, vol.16
, pp. 199-206
-
-
Brochado, A.R.1
Typas, A.2
-
71
-
-
0004256941
-
-
Sterling, VA: ASM Press
-
Cossart P, Boquet P, Normark S, Rappuoli R, Others. 2004 Cellular microbiology. Sterling, VA: ASM Press.
-
(2004)
Cellular Microbiology
-
-
Cossart, P.1
Boquet, P.2
Normark, S.3
Rappuoli, R.4
-
72
-
-
84939784406
-
A perspective on the future of high-throughput RNAi screening: Will CRISPR cut out the competition or can RNAi help guide the way
-
Taylor J, Woodcock S. 2015 A perspective on the future of high-throughput RNAi screening: will CRISPR cut out the competition or can RNAi help guide the way? J. Biomol. Screen. 20, 1040-1051. (doi:10.1177/1087057115590069)
-
(2015)
J. Biomol. Screen
, vol.20
, pp. 1040-1051
-
-
Taylor, J.1
Woodcock, S.2
-
73
-
-
84944632276
-
The new state of the art: Cas9 for gene activation and repression. Mol. Cell
-
La Russa MF, Qi LS. 2015 The new state of the art: Cas9 for gene activation and repression. Mol. Cell. Biol. 35, 3800-3809. (doi:10.1128/MCB.00512-15)
-
(2015)
Biol
, vol.35
, pp. 3800-3809
-
-
La Russa, M.F.1
Qi, L.S.2
-
74
-
-
84930628716
-
Highthroughput screens in mammalian cells using the CRISPR-Cas9 system
-
Peng J, Zhou Y, Zhu S, Wei W. 2015 Highthroughput screens in mammalian cells using the CRISPR-Cas9 system. FEBS J. 282, 2089-2096. (doi:10.1111/febs.13251)
-
(2015)
FEBS J
, vol.282
, pp. 2089-2096
-
-
Peng, J.1
Zhou, Y.2
Zhu, S.3
Wei, W.4
-
75
-
-
84928205754
-
Highthroughput functional genomics using CRISPR-Cas9. Nat
-
Shalem O, Sanjana NE, Zhang F. 2015 Highthroughput functional genomics using CRISPR-Cas9. Nat. Rev. Genet. 16, 299-311. (doi:10.1038/nrg3899)
-
(2015)
Rev. Genet
, vol.16
, pp. 299-311
-
-
Shalem, O.1
Sanjana, N.E.2
Zhang, F.3
-
76
-
-
84941285455
-
Bacterial CRISPR: Accomplishments and prospects
-
Peters JM, Silvis MR, Zhao D, Hawkins JS, Gross CA, Qi LS. 2015 Bacterial CRISPR: accomplishments and prospects. Curr. Opin. Microbiol. 27, 121-126. (doi:10.1016/j.mib.2015.08.007)
-
(2015)
Curr. Opin. Microbiol
, vol.27
, pp. 121-126
-
-
Peters, J.M.1
Silvis, M.R.2
Zhao, D.3
Hawkins, J.S.4
Gross, C.A.5
Qi, L.S.6
-
77
-
-
35348898443
-
Genetics-squared: Combining host and pathogen genetics in the analysis of innate immunity and bacterial virulence
-
Persson J, Vance RE. 2007 Genetics-squared: combining host and pathogen genetics in the analysis of innate immunity and bacterial virulence. Immunogenetics 59, 761-778. (doi:10.1007/s00251-007-0248-0)
-
(2007)
Immunogenetics
, vol.59
, pp. 761-778
-
-
Persson, J.1
Vance, R.E.2
-
78
-
-
84871042527
-
Aggravating genetic interactions allow a solution to redundancy in a bacterial pathogen
-
O’Connor TJ, Boyd D, Dorer MS, Isberg RR. 2012 Aggravating genetic interactions allow a solution to redundancy in a bacterial pathogen. Science 338, 1440-1444. (doi:10.1126/science.1229556)
-
(2012)
Science
, vol.338
, pp. 1440-1444
-
-
O’Connor, T.J.1
Boyd, D.2
Dorer, M.S.3
Isberg, R.R.4
-
79
-
-
84904396621
-
Organogenesis in a dish: Modeling development and disease using organoid technologies
-
Lancaster MA, Knoblich JA. 2014 Organogenesis in a dish: modeling development and disease using organoid technologies. Science 345, p1 247 125. (doi:10.1126/science.1247125)
-
(2014)
Science
, vol.345
, pp. 247
-
-
Lancaster, M.A.1
Knoblich, J.A.2
-
80
-
-
84958987439
-
A novel human gastric primary cell culture system for modelling Helicobacter pylori infection in vitro
-
Schlaermann P, Toelle B, Berger H, Schmidt SC, Glanemann M, Ordemann J, Bartfeld S, Mollenkopf HJ, Meyer TF. 2016 A novel human gastric primary cell culture system for modelling Helicobacter pylori infection in vitro. Gut 65, 202-213. (doi:10.1136/gutjnl-2014-307949)
-
(2016)
Gut
, vol.65
, pp. 202-213
-
-
Schlaermann, P.1
Toelle, B.2
Berger, H.3
Schmidt, S.C.4
Glanemann, M.5
Ordemann, J.6
Bartfeld, S.7
Mollenkopf, H.J.8
Meyer, T.F.9
-
81
-
-
84930999403
-
Interaction of Salmonella enterica serovar Typhimurium with intestinal organoids derived from human induced pluripotent stem cells
-
Forbester JL, Goulding D, Vallier L, Hannan N, Hale C, Pickard D, Mukhopadhyay S, Dougan G. 2015 Interaction of Salmonella enterica serovar Typhimurium with intestinal organoids derived from human induced pluripotent stem cells. Infect. Immun. 83, 2926-2934. (doi:10.1128/IAI.00161-15)
-
(2015)
Infect. Immun
, vol.83
, pp. 2926-2934
-
-
Forbester, J.L.1
Goulding, D.2
Vallier, L.3
Hannan, N.4
Hale, C.5
Pickard, D.6
Mukhopadhyay, S.7
Dougan, G.8
-
82
-
-
84906228597
-
Single-cell RNA-seq: Advances and future challenges
-
Saliba A-E, Westermann AJ, Gorski SA, Vogel J. 2014 Single-cell RNA-seq: advances and future challenges. Nucleic Acids Res. 42, 8845-8860. (doi:10.1093/nar/gku555)
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 8845-8860
-
-
Saliba, A.-E.1
Westermann, A.J.2
Gorski, S.A.3
Vogel, J.4
-
83
-
-
84941333786
-
Pathogen cell-to-cell variability drives heterogeneity in host immune responses
-
Avraham R et al. 2015 Pathogen cell-to-cell variability drives heterogeneity in host immune responses. Cell 162, 1309-1321. (doi:10.1016/j.cell.2015.08.027)
-
(2015)
Cell
, vol.162
, pp. 1309-1321
-
-
Avraham, R.1
-
84
-
-
84920883696
-
Heterogeneous host-pathogen encounters: Act locally, think globally
-
Bumann D. 2015 Heterogeneous host-pathogen encounters: act locally, think globally. Cell Host Microbe 17, 13-19. (doi:10.1016/j.chom.2014.12.006)
-
(2015)
Cell Host Microbe
, vol.17
, pp. 13-19
-
-
Bumann, D.1
-
85
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. 2011 Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc. Natl Acad. Sci. USA 108, 6252-6257. (doi:10.1073/pnas.1102938108)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 6252-6257
-
-
Goodman, A.L.1
Kallstrom, G.2
Faith, J.J.3
Reyes, A.4
Moore, A.5
Dantas, G.6
Gordon, J.I.7
|