메뉴 건너뛰기




Volumn 5, Issue 6, 2014, Pages

Release of nonstop ribosomes is essential

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; MESSENGER RNA; PROTEIN ARFB; PROTEIN CC1214; TRANSFER MESSENGER RNA; UNCLASSIFIED DRUG;

EID: 84920911067     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01916-14     Document Type: Article
Times cited : (31)

References (39)
  • 2
    • 70350654363 scopus 로고    scopus 로고
    • What recent ribosome structures have revealed about the mechanism of translation
    • Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461: 1234–1242. http://dx.doi.org/10.1038/nature08403.
    • (2009) Nature , vol.461 , pp. 1234-1242
    • Schmeing, T.M.1    Ramakrishnan, V.2
  • 3
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler KC, Waller PR, Sauer RT. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-993. http://dx.doi.org/10.1126/science.271.5251.990.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 4
    • 53849117142 scopus 로고    scopus 로고
    • Biology of trans-translation
    • Keiler KC. 2008. Biology of trans-translation. Annu. Rev. Microbiol. 62: 133–151. http://dx.doi.org/10.1146/annurev.micro.62.081307.162948.
    • (2008) Annu. Rev. Microbiol , vol.62 , pp. 133-151
    • Keiler, K.C.1
  • 5
    • 34247103448 scopus 로고    scopus 로고
    • The tmRNA system for translational surveillance and ribosome rescue
    • Moore SD, Sauer RT. 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76:101–124. http://dx.doi.org/10.1146/annurev.biochem.75.103004.142733.
    • (2007) Annu. Rev. Biochem , vol.76 , pp. 101-124
    • Moore, S.D.1    Sauer, R.T.2
  • 6
    • 84987850227 scopus 로고    scopus 로고
    • Ends of the line for tmRNASmpB. Front
    • Hudson CM, Lau BY, Williams KP. 2014. Ends of the line for tmRNASmpB. Front. Microbiol. 5:421. http://dx.doi.org/10.3389/fmicb.2014.00421.
    • (2014) Microbiol , vol.5 , pp. 421
    • Hudson, C.M.1    Lau, B.Y.2    Williams, K.P.3
  • 7
    • 84901218416 scopus 로고    scopus 로고
    • Resolving nonstop translation complexes is a matter of life or death
    • Keiler KC, Feaga HA. 2014. Resolving nonstop translation complexes is a matter of life or death. J. Bacteriol. 196:2123–2130. http://dx.doi.org/10.1128/JB.01490-14.
    • (2014) J. Bacteriol , vol.196 , pp. 2123-2130
    • Keiler, K.C.1    Feaga, H.A.2
  • 9
    • 84867044295 scopus 로고    scopus 로고
    • ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli
    • Chadani Y, Ito K, Kutsukake K, Abo T. 2012. ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli. Mol. Microbiol. 86:37–50. http://dx.doi.org/10.1111/j.1365-2958.2012.08190.x.
    • (2012) Mol. Microbiol , vol.86 , pp. 37-50
    • Chadani, Y.1    Ito, K.2    Kutsukake, K.3    Abo, T.4
  • 10
    • 84867267912 scopus 로고    scopus 로고
    • ArfA recruits RF2 into stalled ribosomes
    • Shimizu Y. 2012. ArfA recruits RF2 into stalled ribosomes. J. Mol. Biol. 423:624–631. http://dx.doi.org/10.1016/j.jmb.2012.08.007.
    • (2012) J. Mol. Biol , vol.423 , pp. 624-631
    • Shimizu, Y.1
  • 11
    • 84865528147 scopus 로고    scopus 로고
    • Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs
    • Schaub RE, Poole SJ, Garza-Sánchez F, Benbow S, Hayes CS. 2012. Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs. J. Biol. Chem. 287:29765–29775. http://dx.doi.org/10.1074/jbc.M112.374074.
    • (2012) J. Biol. Chem , vol.287 , pp. 29765-29775
    • Schaub, R.E.1    Poole, S.J.2    Garza-Sánchez, F.3    Benbow, S.4    Hayes, C.S.5
  • 12
    • 79957496565 scopus 로고    scopus 로고
    • TmRNA regulates synthesis of the ArfA ribosome rescue factor
    • Garza-Sánchez F, Schaub RE, Janssen BD, Hayes CS. 2011. tmRNA regulates synthesis of the ArfA ribosome rescue factor. Mol. Microbiol. 80:1204–1219. http://dx.doi.org/10.1111/j.1365-2958.2011.07638.x.
    • (2011) Mol. Microbiol , vol.80 , pp. 1204-1219
    • Garza-Sánchez, F.1    Schaub, R.E.2    Janssen, B.D.3    Hayes, C.S.4
  • 13
    • 84874378359 scopus 로고    scopus 로고
    • TmRNA is essential in Shigella flexneri
    • Ramadoss NS, Zhou X, Keiler KC. 2013. tmRNA is essential in Shigella flexneri. PLoS ONE 8:e57537. http://dx.doi.org/10.1371/journal.pone.0057537.
    • (2013) Plos ONE , vol.8
    • Ramadoss, N.S.1    Zhou, X.2    Keiler, K.C.3
  • 14
    • 78651110827 scopus 로고    scopus 로고
    • Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S 7
    • Schaub RE, Hayes CS. 2011. Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S 7. Mol. Microbiol. 79:331–341. http://dx.doi.org/10.1111/j.1365-2958.2010.07467.x.
    • (2011) Mol. Microbiol , vol.79 , pp. 331-341
    • Schaub, R.E.1    Hayes, C.S.2
  • 15
    • 73949097952 scopus 로고    scopus 로고
    • Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis
    • Shoji S, Janssen BD, Hayes CS, Fredrick K. 2010. Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis. Biochimie 92:157–163. http://dx.doi.org/10.1016/j.biochi.2009.11.002.
    • (2010) Biochimie , vol.92 , pp. 157-163
    • Shoji, S.1    Janssen, B.D.2    Hayes, C.S.3    Fredrick, K.4
  • 16
    • 84871918588 scopus 로고    scopus 로고
    • Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
    • Ude S, Lassak J, Starosta AL, Kraxenberger T, Wilson DN, Jung K. 2013. Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339:82-85. http://dx.doi.org/10.1126/science.1228985.
    • (2013) Science , vol.339 , pp. 82-85
    • Ude, S.1    Lassak, J.2    Starosta, A.L.3    Kraxenberger, T.4    Wilson, D.N.5    Jung, K.6
  • 17
    • 11344289875 scopus 로고    scopus 로고
    • A physiological connection between tm-RNA and peptidyl-tRNA hydrolase functions in Escherichia coli
    • Singh NS, Varshney U. 2004. A physiological connection between tm-RNA and peptidyl-tRNA hydrolase functions in Escherichia coli. Nucleic Acids Res. 32:6028–6037. http://dx.doi.org/10.1093/nar/gkh924.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6028-6037
    • Singh, N.S.1    Varshney, U.2
  • 18
    • 0037133638 scopus 로고    scopus 로고
    • Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
    • Hayes CS, Bose B, Sauer RT. 2002. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99:3440–3445. http://dx.doi.org/10.1073/pnas.052707199.
    • (2002) Proc. Natl. Acad. Sci. U. S. A , vol.99 , pp. 3440-3445
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 19
    • 79955008757 scopus 로고    scopus 로고
    • Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrAand ArfA-mediated pathways. Mol
    • Chadani Y, Ono K, Kutsukake K, Abo T. 2011. Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrAand ArfA-mediated pathways. Mol. Microbiol. 80:772–785. http://dx.doi.org/10.1111/j.1365-2958.2011.07607.x.
    • (2011) Microbiol , vol.80 , pp. 772-785
    • Chadani, Y.1    Ono, K.2    Kutsukake, K.3    Abo, T.4
  • 20
    • 0022351923 scopus 로고
    • Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria
    • Gay P, Le Coq D, Steinmetz M, Berkelman T, Kado CI. 1985. Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria. J. Bacteriol. 164:918–921.
    • (1985) J. Bacteriol , vol.164 , pp. 918-921
    • Gay, P.1    Le Coq, D.2    Steinmetz, M.3    Berkelman, T.4    Kado, C.I.5
  • 22
    • 0037223622 scopus 로고    scopus 로고
    • The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF 2
    • Mora L, Heurgué-Hamard V, Champ S, Ehrenberg M, Kisselev LL, Buckingham RH. 2003. The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF 2. Mol. Microbiol. 47:267–275. http://dx.doi.org/10.1046/j.1365-2958.2003.03301.x.
    • (2003) Mol. Microbiol , vol.47 , pp. 267-275
    • Mora, L.1    Heurgué-Hamard, V.2    Champ, S.3    Ehrenberg, M.4    Kisselev, L.L.5    Buckingham, R.H.6
  • 23
    • 0037227964 scopus 로고    scopus 로고
    • TmRNA is required for correct timing of DNA replication in Caulobacter crescentus
    • Keiler KC, Shapiro L. 2003. tmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J. Bacteriol. 185:573–580. http://dx.doi.org/10.1128/JB.185.2.573-580.2003.
    • (2003) J. Bacteriol , vol.185 , pp. 573-580
    • Keiler, K.C.1    Shapiro, L.2
  • 25
    • 0026079941 scopus 로고
    • Discovery of a rhizobial RNA that is essential for symbiotic root nodule development
    • Ebeling S, Kündig C, Hennecke H. 1991. Discovery of a rhizobial RNA that is essential for symbiotic root nodule development. J. Bacteriol. 173: 6373–6382.
    • (1991) J. Bacteriol , vol.173 , pp. 6373-6382
    • Ebeling, S.1    Kündig, C.2    Hennecke, H.3
  • 26
    • 84887212377 scopus 로고    scopus 로고
    • The SmpB-tmRNA tagging system plays important roles in Streptomyces coelicolor growth and development
    • Yang C, Glover JR. 2009. The SmpB-tmRNA tagging system plays important roles in Streptomyces coelicolor growth and development. PLoS One 4:e4459. http://dx.doi.org/10.1371/journal.pone.0004459.
    • (2009) Plos One , vol.4
    • Yang, C.1    Glover, J.R.2
  • 27
    • 0037336119 scopus 로고    scopus 로고
    • . TmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation
    • Keiler KC, Shapiro L. 2003. tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation. J. Bacteriol. 185:1825–1830. http://dx.doi.org/10.1128/JB.185.6.1825-1830.2003.
    • (2003) J. Bacteriol , vol.185 , pp. 1825-1830
    • Keiler, K.C.1    Shapiro, L.2
  • 28
    • 22144462503 scopus 로고    scopus 로고
    • Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB
    • Hong SJ, Tran QA, Keiler KC. 2005. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Mol. Microbiol. 57:565–575. http://dx.doi.org/10.1111/j.1365-2958.2005.04709.x.
    • (2005) Mol. Microbiol , vol.57 , pp. 565-575
    • Hong, S.J.1    Tran, Q.A.2    Keiler, K.C.3
  • 29
    • 84879809209 scopus 로고    scopus 로고
    • Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene coexpression and evolution
    • Fang G, Passalacqua KD, Hocking J, Llopis PM, Gerstein M, Bergman NH, Jacobs-Wagner C. 2013. Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene coexpression and evolution. BMC Genomics 14:450. http://dx.doi.org/10.1186/1471-2164-14-450.
    • (2013) BMC Genomics , vol.14 , pp. 450
    • Fang, G.1    Passalacqua, K.D.2    Hocking, J.3    Llopis, P.M.4    Gerstein, M.5    Bergman, N.H.6    Jacobs-Wagner, C.7
  • 31
    • 79953142009 scopus 로고    scopus 로고
    • YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes
    • Handa Y, Inaho N, Nameki N. 2011. YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes. Nucleic Acids Res. 39:1739–1748. http://dx.doi.org/10.1093/nar/gkq1097.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1739-1748
    • Handa, Y.1    Inaho, N.2    Nameki, N.3
  • 32
    • 34347390665 scopus 로고    scopus 로고
    • A robust species tree for the Alphaproteobacteria
    • Williams KP, Sobral BW, Dickerman AW. 2007. A robust species tree for the Alphaproteobacteria. J. Bacteriol. 189:4578–4586. http://dx.doi.org/10.1128/JB.00269-07.
    • (2007) J. Bacteriol , vol.189 , pp. 4578-4586
    • Williams, K.P.1    Sobral, B.W.2    Dickerman, A.W.3
  • 33
    • 84892700942 scopus 로고    scopus 로고
    • Computational and genetic reduction of a cell cycle to its simplest, primordial components
    • Murray SM, Panis G, Fumeaux C, Viollier PH, Howard M. 2013. Computational and genetic reduction of a cell cycle to its simplest, primordial components. PLoS Biol. 11:e1001749. http://dx.doi.org/10.1371/journal.pbio.1001749.
    • (2013) Plos Biol , pp. 11
    • Murray, S.M.1    Panis, G.2    Fumeaux, C.3    Viollier, P.H.4    Howard, M.5
  • 34
    • 0036207168 scopus 로고    scopus 로고
    • Use of the Caulobacter crescentus genome sequence to develop a method for systematic genetic mapping
    • West L, Yang D, Stephens C. 2002. Use of the Caulobacter crescentus genome sequence to develop a method for systematic genetic mapping. J. Bacteriol. 184:-2155–2166. http://dx.doi.org/10.1128/JB.184.8.2155-2166.2002.
    • (2002) J. Bacteriol , vol.184 , pp. 2155-2166
    • West, L.1    Yang, D.2    Stephens, C.3
  • 35
    • 0017753103 scopus 로고
    • Generalized transduction in Caulobacter crescentus
    • Ely B, Johnson RC. 1977. Generalized transduction in Caulobacter crescentus. Genetics 87:391–399.
    • (1977) Genetics , vol.87 , pp. 391-399
    • Ely, B.1    Johnson, R.C.2
  • 38
    • 0017740506 scopus 로고
    • Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells
    • Evinger M, Agabian N. 1977. Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells. J. Bacteriol. 132:294–301.
    • (1977) J. Bacteriol , vol.132 , pp. 294-301
    • Evinger, M.1    Agabian, N.2
  • 39
    • 36749049715 scopus 로고    scopus 로고
    • A comprehensive set of plasmids for vanillate-and xylose-inducible gene expression in Caulobacter crescentus
    • Thanbichler M, Iniesta AA, Shapiro L. 2007. A comprehensive set of plasmids for vanillate-and xylose-inducible gene expression in Caulobacter crescentus. Nucleic Acids Res. 35:e137. http://dx.doi.org/10.1093/nar/gkm818.
    • (2007) Nucleic Acids Res , vol.137 , pp. 35
    • Thanbichler, M.1    Iniesta, A.A.2    Shapiro, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.