-
2
-
-
70350654363
-
What recent ribosome structures have revealed about the mechanism of translation
-
Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461: 1234–1242. http://dx.doi.org/10.1038/nature08403.
-
(2009)
Nature
, vol.461
, pp. 1234-1242
-
-
Schmeing, T.M.1
Ramakrishnan, V.2
-
3
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler KC, Waller PR, Sauer RT. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-993. http://dx.doi.org/10.1126/science.271.5251.990.
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
4
-
-
53849117142
-
Biology of trans-translation
-
Keiler KC. 2008. Biology of trans-translation. Annu. Rev. Microbiol. 62: 133–151. http://dx.doi.org/10.1146/annurev.micro.62.081307.162948.
-
(2008)
Annu. Rev. Microbiol
, vol.62
, pp. 133-151
-
-
Keiler, K.C.1
-
5
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
Moore SD, Sauer RT. 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76:101–124. http://dx.doi.org/10.1146/annurev.biochem.75.103004.142733.
-
(2007)
Annu. Rev. Biochem
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
6
-
-
84987850227
-
Ends of the line for tmRNASmpB. Front
-
Hudson CM, Lau BY, Williams KP. 2014. Ends of the line for tmRNASmpB. Front. Microbiol. 5:421. http://dx.doi.org/10.3389/fmicb.2014.00421.
-
(2014)
Microbiol
, vol.5
, pp. 421
-
-
Hudson, C.M.1
Lau, B.Y.2
Williams, K.P.3
-
7
-
-
84901218416
-
Resolving nonstop translation complexes is a matter of life or death
-
Keiler KC, Feaga HA. 2014. Resolving nonstop translation complexes is a matter of life or death. J. Bacteriol. 196:2123–2130. http://dx.doi.org/10.1128/JB.01490-14.
-
(2014)
J. Bacteriol
, vol.196
, pp. 2123-2130
-
-
Keiler, K.C.1
Feaga, H.A.2
-
8
-
-
78349300881
-
Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system
-
Chadani Y, Ono K, Ozawa S, Takahashi Y, Takai K, Nanamiya H, Tozawa Y, Kutsukake K, Abo T. 2010. Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system. Mol. Microbiol. 78:796–808. http://dx.doi.org/10.1111/j.1365-2958.2010.07375.x.
-
(2010)
Mol. Microbiol
, vol.78
, pp. 796-808
-
-
Chadani, Y.1
Ono, K.2
Ozawa, S.3
Takahashi, Y.4
Takai, K.5
Nanamiya, H.6
Tozawa, Y.7
Kutsukake, K.8
Abo, T.9
-
9
-
-
84867044295
-
ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli
-
Chadani Y, Ito K, Kutsukake K, Abo T. 2012. ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli. Mol. Microbiol. 86:37–50. http://dx.doi.org/10.1111/j.1365-2958.2012.08190.x.
-
(2012)
Mol. Microbiol
, vol.86
, pp. 37-50
-
-
Chadani, Y.1
Ito, K.2
Kutsukake, K.3
Abo, T.4
-
10
-
-
84867267912
-
ArfA recruits RF2 into stalled ribosomes
-
Shimizu Y. 2012. ArfA recruits RF2 into stalled ribosomes. J. Mol. Biol. 423:624–631. http://dx.doi.org/10.1016/j.jmb.2012.08.007.
-
(2012)
J. Mol. Biol
, vol.423
, pp. 624-631
-
-
Shimizu, Y.1
-
11
-
-
84865528147
-
Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs
-
Schaub RE, Poole SJ, Garza-Sánchez F, Benbow S, Hayes CS. 2012. Proteobacterial ArfA peptides are synthesized from non-stop messenger RNAs. J. Biol. Chem. 287:29765–29775. http://dx.doi.org/10.1074/jbc.M112.374074.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 29765-29775
-
-
Schaub, R.E.1
Poole, S.J.2
Garza-Sánchez, F.3
Benbow, S.4
Hayes, C.S.5
-
12
-
-
79957496565
-
TmRNA regulates synthesis of the ArfA ribosome rescue factor
-
Garza-Sánchez F, Schaub RE, Janssen BD, Hayes CS. 2011. tmRNA regulates synthesis of the ArfA ribosome rescue factor. Mol. Microbiol. 80:1204–1219. http://dx.doi.org/10.1111/j.1365-2958.2011.07638.x.
-
(2011)
Mol. Microbiol
, vol.80
, pp. 1204-1219
-
-
Garza-Sánchez, F.1
Schaub, R.E.2
Janssen, B.D.3
Hayes, C.S.4
-
13
-
-
84874378359
-
TmRNA is essential in Shigella flexneri
-
Ramadoss NS, Zhou X, Keiler KC. 2013. tmRNA is essential in Shigella flexneri. PLoS ONE 8:e57537. http://dx.doi.org/10.1371/journal.pone.0057537.
-
(2013)
Plos ONE
, vol.8
-
-
Ramadoss, N.S.1
Zhou, X.2
Keiler, K.C.3
-
14
-
-
78651110827
-
Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S 7
-
Schaub RE, Hayes CS. 2011. Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S 7. Mol. Microbiol. 79:331–341. http://dx.doi.org/10.1111/j.1365-2958.2010.07467.x.
-
(2011)
Mol. Microbiol
, vol.79
, pp. 331-341
-
-
Schaub, R.E.1
Hayes, C.S.2
-
15
-
-
73949097952
-
Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis
-
Shoji S, Janssen BD, Hayes CS, Fredrick K. 2010. Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis. Biochimie 92:157–163. http://dx.doi.org/10.1016/j.biochi.2009.11.002.
-
(2010)
Biochimie
, vol.92
, pp. 157-163
-
-
Shoji, S.1
Janssen, B.D.2
Hayes, C.S.3
Fredrick, K.4
-
16
-
-
84871918588
-
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
-
Ude S, Lassak J, Starosta AL, Kraxenberger T, Wilson DN, Jung K. 2013. Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339:82-85. http://dx.doi.org/10.1126/science.1228985.
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
17
-
-
11344289875
-
A physiological connection between tm-RNA and peptidyl-tRNA hydrolase functions in Escherichia coli
-
Singh NS, Varshney U. 2004. A physiological connection between tm-RNA and peptidyl-tRNA hydrolase functions in Escherichia coli. Nucleic Acids Res. 32:6028–6037. http://dx.doi.org/10.1093/nar/gkh924.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6028-6037
-
-
Singh, N.S.1
Varshney, U.2
-
18
-
-
0037133638
-
Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
-
Hayes CS, Bose B, Sauer RT. 2002. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99:3440–3445. http://dx.doi.org/10.1073/pnas.052707199.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A
, vol.99
, pp. 3440-3445
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
19
-
-
79955008757
-
Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrAand ArfA-mediated pathways. Mol
-
Chadani Y, Ono K, Kutsukake K, Abo T. 2011. Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrAand ArfA-mediated pathways. Mol. Microbiol. 80:772–785. http://dx.doi.org/10.1111/j.1365-2958.2011.07607.x.
-
(2011)
Microbiol
, vol.80
, pp. 772-785
-
-
Chadani, Y.1
Ono, K.2
Kutsukake, K.3
Abo, T.4
-
20
-
-
0022351923
-
Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria
-
Gay P, Le Coq D, Steinmetz M, Berkelman T, Kado CI. 1985. Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria. J. Bacteriol. 164:918–921.
-
(1985)
J. Bacteriol
, vol.164
, pp. 918-921
-
-
Gay, P.1
Le Coq, D.2
Steinmetz, M.3
Berkelman, T.4
Kado, C.I.5
-
21
-
-
84905454831
-
The coding and noncoding architecture of the Caulobacter crescentus genome
-
Schrader JM, Zhou B, Li G-W, Lasker K, Childers WS, Williams B, Long T, Crosson S, McAdams HH, Weissman JS, Shapiro L. 2014. The coding and noncoding architecture of the Caulobacter crescentus genome. PLoS Genet. 10:e1004463. http://dx.doi.org/10.1371/journal.pgen.1004463.
-
(2014)
Plos Genet
, pp. 10
-
-
Schrader, J.M.1
Zhou, B.2
Li, G.-W.3
Lasker, K.4
Childers, W.S.5
Williams, B.6
Long, T.7
Crosson, S.8
McAdams, H.H.9
Weissman, J.S.10
Shapiro, L.11
-
22
-
-
0037223622
-
The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF 2
-
Mora L, Heurgué-Hamard V, Champ S, Ehrenberg M, Kisselev LL, Buckingham RH. 2003. The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF 2. Mol. Microbiol. 47:267–275. http://dx.doi.org/10.1046/j.1365-2958.2003.03301.x.
-
(2003)
Mol. Microbiol
, vol.47
, pp. 267-275
-
-
Mora, L.1
Heurgué-Hamard, V.2
Champ, S.3
Ehrenberg, M.4
Kisselev, L.L.5
Buckingham, R.H.6
-
23
-
-
0037227964
-
TmRNA is required for correct timing of DNA replication in Caulobacter crescentus
-
Keiler KC, Shapiro L. 2003. tmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J. Bacteriol. 185:573–580. http://dx.doi.org/10.1128/JB.185.2.573-580.2003.
-
(2003)
J. Bacteriol
, vol.185
, pp. 573-580
-
-
Keiler, K.C.1
Shapiro, L.2
-
24
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
25
-
-
0026079941
-
Discovery of a rhizobial RNA that is essential for symbiotic root nodule development
-
Ebeling S, Kündig C, Hennecke H. 1991. Discovery of a rhizobial RNA that is essential for symbiotic root nodule development. J. Bacteriol. 173: 6373–6382.
-
(1991)
J. Bacteriol
, vol.173
, pp. 6373-6382
-
-
Ebeling, S.1
Kündig, C.2
Hennecke, H.3
-
26
-
-
84887212377
-
The SmpB-tmRNA tagging system plays important roles in Streptomyces coelicolor growth and development
-
Yang C, Glover JR. 2009. The SmpB-tmRNA tagging system plays important roles in Streptomyces coelicolor growth and development. PLoS One 4:e4459. http://dx.doi.org/10.1371/journal.pone.0004459.
-
(2009)
Plos One
, vol.4
-
-
Yang, C.1
Glover, J.R.2
-
27
-
-
0037336119
-
. TmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation
-
Keiler KC, Shapiro L. 2003. tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation. J. Bacteriol. 185:1825–1830. http://dx.doi.org/10.1128/JB.185.6.1825-1830.2003.
-
(2003)
J. Bacteriol
, vol.185
, pp. 1825-1830
-
-
Keiler, K.C.1
Shapiro, L.2
-
28
-
-
22144462503
-
Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB
-
Hong SJ, Tran QA, Keiler KC. 2005. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Mol. Microbiol. 57:565–575. http://dx.doi.org/10.1111/j.1365-2958.2005.04709.x.
-
(2005)
Mol. Microbiol
, vol.57
, pp. 565-575
-
-
Hong, S.J.1
Tran, Q.A.2
Keiler, K.C.3
-
29
-
-
84879809209
-
Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene coexpression and evolution
-
Fang G, Passalacqua KD, Hocking J, Llopis PM, Gerstein M, Bergman NH, Jacobs-Wagner C. 2013. Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene coexpression and evolution. BMC Genomics 14:450. http://dx.doi.org/10.1186/1471-2164-14-450.
-
(2013)
BMC Genomics
, vol.14
, pp. 450
-
-
Fang, G.1
Passalacqua, K.D.2
Hocking, J.3
Llopis, P.M.4
Gerstein, M.5
Bergman, N.H.6
Jacobs-Wagner, C.7
-
30
-
-
77949547496
-
A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome
-
Richter R, Rorbach J, Pajak A, Smith PM, Wessels HJ, Huynen MA, Smeitink JA, Lightowlers RN, Chrzanowska-Lightowlers ZM. 2010. A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome. EMBO J. 29:1116-1125. http://dx.doi.org/10.1038/emboj.2010.14.
-
(2010)
EMBO J
, vol.29
, pp. 1116-1125
-
-
Richter, R.1
Rorbach, J.2
Pajak, A.3
Smith, P.M.4
Wessels, H.J.5
Huynen, M.A.6
Smeitink, J.A.7
Lightowlers, R.N.8
Chrzanowska-Lightowlers, Z.M.9
-
31
-
-
79953142009
-
YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes
-
Handa Y, Inaho N, Nameki N. 2011. YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes. Nucleic Acids Res. 39:1739–1748. http://dx.doi.org/10.1093/nar/gkq1097.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1739-1748
-
-
Handa, Y.1
Inaho, N.2
Nameki, N.3
-
32
-
-
34347390665
-
A robust species tree for the Alphaproteobacteria
-
Williams KP, Sobral BW, Dickerman AW. 2007. A robust species tree for the Alphaproteobacteria. J. Bacteriol. 189:4578–4586. http://dx.doi.org/10.1128/JB.00269-07.
-
(2007)
J. Bacteriol
, vol.189
, pp. 4578-4586
-
-
Williams, K.P.1
Sobral, B.W.2
Dickerman, A.W.3
-
33
-
-
84892700942
-
Computational and genetic reduction of a cell cycle to its simplest, primordial components
-
Murray SM, Panis G, Fumeaux C, Viollier PH, Howard M. 2013. Computational and genetic reduction of a cell cycle to its simplest, primordial components. PLoS Biol. 11:e1001749. http://dx.doi.org/10.1371/journal.pbio.1001749.
-
(2013)
Plos Biol
, pp. 11
-
-
Murray, S.M.1
Panis, G.2
Fumeaux, C.3
Viollier, P.H.4
Howard, M.5
-
34
-
-
0036207168
-
Use of the Caulobacter crescentus genome sequence to develop a method for systematic genetic mapping
-
West L, Yang D, Stephens C. 2002. Use of the Caulobacter crescentus genome sequence to develop a method for systematic genetic mapping. J. Bacteriol. 184:-2155–2166. http://dx.doi.org/10.1128/JB.184.8.2155-2166.2002.
-
(2002)
J. Bacteriol
, vol.184
, pp. 2155-2166
-
-
West, L.1
Yang, D.2
Stephens, C.3
-
35
-
-
0017753103
-
Generalized transduction in Caulobacter crescentus
-
Ely B, Johnson RC. 1977. Generalized transduction in Caulobacter crescentus. Genetics 87:391–399.
-
(1977)
Genetics
, vol.87
, pp. 391-399
-
-
Ely, B.1
Johnson, R.C.2
-
36
-
-
84879298824
-
Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity
-
Ramadoss NS, Alumasa JN, Cheng L, Wang Y, Li S, Chambers BS, Chang H, Chatterjee AK, Brinker A, Engels IH, Keiler KC. 2013. Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity. Proc. Natl. Acad. Sci. U. S. A. 110:10282–10287. http://dx.doi.org/10.1073/pnas.1302816110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A
, vol.110
, pp. 10282-10287
-
-
Ramadoss, N.S.1
Alumasa, J.N.2
Cheng, L.3
Wang, Y.4
Li, S.5
Chambers, B.S.6
Chang, H.7
Chatterjee, A.K.8
Brinker, A.9
Engels, I.H.10
Keiler, K.C.11
-
37
-
-
84891776599
-
PATRIC, the bacterial bioinformatics database and analysis resource
-
Wattam AR, Abraham D, Dalay O, Disz TL, Driscoll T, Gabbard JL, Gillespie JJ, Gough R, Hix D, Kenyon R, Machi D, Mao C, Nordberg EK, Olson R, Overbeek R, Pusch GD, Shukla M, Schulman J, Stevens RL, Sullivan DE, Vonstein V, Warren A, Will R, Wilson MJ, Yoo HS, Zhang C, Zhang Y, Sobral BW. 2014. PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res. 42:D581–D591. http://dx.doi.org/10.1093/nar/gkt1099.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D581-D591
-
-
Wattam, A.R.1
Abraham, D.2
Dalay, O.3
Disz, T.L.4
Driscoll, T.5
Gabbard, J.L.6
Gillespie, J.J.7
Gough, R.8
Hix, D.9
Kenyon, R.10
Machi, D.11
Mao, C.12
Nordberg, E.K.13
Olson, R.14
Overbeek, R.15
Pusch, G.D.16
Shukla, M.17
Schulman, J.18
Stevens, R.L.19
Sullivan, D.E.20
Vonstein, V.21
Warren, A.22
Will, R.23
Wilson, M.J.24
Yoo, H.S.25
Zhang, C.26
Zhang, Y.27
Sobral, B.W.28
more..
-
38
-
-
0017740506
-
Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells
-
Evinger M, Agabian N. 1977. Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells. J. Bacteriol. 132:294–301.
-
(1977)
J. Bacteriol
, vol.132
, pp. 294-301
-
-
Evinger, M.1
Agabian, N.2
-
39
-
-
36749049715
-
A comprehensive set of plasmids for vanillate-and xylose-inducible gene expression in Caulobacter crescentus
-
Thanbichler M, Iniesta AA, Shapiro L. 2007. A comprehensive set of plasmids for vanillate-and xylose-inducible gene expression in Caulobacter crescentus. Nucleic Acids Res. 35:e137. http://dx.doi.org/10.1093/nar/gkm818.
-
(2007)
Nucleic Acids Res
, vol.137
, pp. 35
-
-
Thanbichler, M.1
Iniesta, A.A.2
Shapiro, L.3
|