-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
PMID:16738554
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection. Mol Syst Biol 2006; 2:0008; PMID:16738554; http://dx.doi.org/10.1038/msb4100050.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
-
2
-
-
73849131808
-
Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: Analysis of a bar-coded mutant collection
-
PMID:19734312
-
Hobbs EC, Astarita JL, Storz G. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: Analysis of a bar-coded mutant collection. J Bacteriol 2010; 192:59-67; PMID:19734312; http://dx.doi.org/10.1128/JB.00873-09.
-
(2010)
J Bacteriol
, vol.192
, pp. 59-67
-
-
Hobbs, E.C.1
Astarita, J.L.2
Storz, G.3
-
3
-
-
0029117137
-
Simultaneous identification of bacterial virulence genes by negative selection
-
PMID:7618105
-
Hensel M, Shea JE, Gleeson C, Jones MD, Dalton E, Holden DW. Simultaneous identification of bacterial virulence genes by negative selection. Science 1995; 269:400-3; PMID:7618105; http://dx.doi.org/10.1126/science.7618105.
-
(1995)
Science
, vol.269
, pp. 400-403
-
-
Hensel, M.1
Shea, J.E.2
Gleeson, C.3
Jones, M.D.4
Dalton, E.5
Holden, D.W.6
-
4
-
-
33845311869
-
Signature-tagged mutagenesis: Barcoding mutants for genome-wide screens
-
PMID:17139324
-
Mazurkiewicz P, Tang CM, Boone C, Holden DW. Signature-tagged mutagenesis: barcoding mutants for genome-wide screens. Nat Rev Genet 2006; 7:929-39; PMID:17139324; http://dx.doi.org/10.1038/nrg1984.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 929-939
-
-
Mazurkiewicz, P.1
Tang, C.M.2
Boone, C.3
Holden, D.W.4
-
5
-
-
0032764518
-
Global transposon mutagenesis and a minimal Mycoplasma genome
-
PMID:10591650
-
Hutchison CA, Peterson SN, Gill SR, Cline RT, White O, Fraser CM, et al. Global transposon mutagenesis and a minimal Mycoplasma genome. Science 1999; 286:2165-9; PMID:10591650; http://dx.doi.org/10.1126/science.286.5447.2165.
-
(1999)
Science
, vol.286
, pp. 2165-2169
-
-
Hutchison, C.A.1
Peterson, S.N.2
Gill, S.R.3
Cline, R.T.4
White, O.5
Fraser, C.M.6
-
6
-
-
73249130761
-
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
-
PMID:19826075
-
Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, et al. Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res 2009; 19:2308-16; PMID:19826075; http://dx.doi.org/10.1101/ gr.097097.109.
-
(2009)
Genome Res
, vol.19
, pp. 2308-2316
-
-
Langridge, G.C.1
Phan, M.D.2
Turner, D.J.3
Perkins, T.T.4
Parts, L.5
Haase, J.6
-
7
-
-
69949123813
-
Identifying genetic determinants needed to establish a human gut symbiont in its habitat
-
PMID:19748469
-
Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, et al. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 2009; 6:279-89; PMID:19748469; http://dx.doi.org/10. 1016/j.chom.2009.08.003.
-
(2009)
Cell Host Microbe
, vol.6
, pp. 279-289
-
-
Goodman, A.L.1
McNulty, N.P.2
Zhao, Y.3
Leip, D.4
Mitra, R.D.5
Lozupone, C.A.6
-
8
-
-
70349510646
-
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
-
PMID:19805314
-
Gawronski JD, Wong SM, Giannoukos G, Ward DV, Akerley BJ. Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung. Proc Natl Acad Sci USA 2009; 106:16422-7; PMID:19805314; http://dx.doi.org/10.1073/pnas.0906627106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 16422-16427
-
-
Gawronski, J.D.1
Wong, S.M.2
Giannoukos, G.3
Ward, D.V.4
Akerley, B.J.5
-
9
-
-
70349611730
-
Tn-seq: Highthroughput parallel sequencing for fitness and genetic interaction studies in microorganisms
-
PMID:19767758
-
van Opijnen T, Bodi KL, Camilli A. Tn-seq: highthroughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat Methods 2009; 6:767-72; PMID:19767758; http://dx.doi.org/10.1038/nmeth.1377.
-
(2009)
Nat Methods
, vol.6
, pp. 767-772
-
-
Van Opijnen, T.1
Bodi, K.L.2
Camilli, A.3
-
10
-
-
79955079817
-
Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq
-
PMID:21253457
-
Gallagher LA, Shendure J, Manoil C. Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq. MBio 2011; 2:e00315-10; PMID:21253457; http://dx.doi.org/10.1128/mBio.00315-10.
-
(2011)
MBio
, vol.2
-
-
Gallagher, L.A.1
Shendure, J.2
Manoil, C.3
-
11
-
-
84860541398
-
Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries
-
PMID:22094732
-
Goodman AL, Wu M, Gordon JI. Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries. Nat Protoc 2011; 6:1969-80; PMID:22094732; http://dx.doi.org/10.1038/nprot.2011.417.
-
(2011)
Nat Protoc
, vol.6
, pp. 1969-1980
-
-
Goodman, A.L.1
Wu, M.2
Gordon, J.I.3
-
12
-
-
0036606544
-
Systematic sequencing of cDNA clones using the transposon Tn5
-
PMID:12034835
-
Shevchenko Y, Bouffard GG, Butterfield YS, Blakesley RW, Hartley JL, Young AC, et al. Systematic sequencing of cDNA clones using the transposon Tn5. Nucleic Acids Res 2002; 30:2469-77; PMID:12034835; http://dx.doi.org/10.1093/ nar/30.11.2469.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2469-2477
-
-
Shevchenko, Y.1
Bouffard, G.G.2
Butterfield, Y.S.3
Blakesley, R.W.4
Hartley, J.L.5
Young, A.C.6
-
13
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
PMID:21143862
-
Adey A, Morrison HG, Asan, Xun X, Kitzman JO, Turner EH, et al. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol 2010; 11:R119; PMID:21143862; http://dx.doi.org/10.1186/gb-2010-11-12-r119.
-
(2010)
Genome Biol
, vol.11
-
-
Adey, A.1
Morrison, H.G.2
Asan3
Xun, X.4
Kitzman, J.O.5
Turner, E.H.6
-
14
-
-
84860644929
-
Insertion site preference of Mu, Tn5, and Tn7 transposons
-
PMID:22313799
-
Green B, Bouchier C, Fairhead C, Craig NL, Cormack BP. Insertion site preference of Mu, Tn5, and Tn7 transposons. Mob DNA 2012; 3:3; PMID:22313799; http://dx.doi.org/10.1186/1759-8753-3-3.
-
(2012)
Mob DNA
, vol.3
, Issue.3
-
-
Green, B.1
Bouchier, C.2
Fairhead, C.3
Craig, N.L.4
Cormack, B.P.5
-
15
-
-
84877290776
-
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
-
PMID:23470992
-
Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, et al. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Res 2013; 41:4549-64; PMID:23470992; http://dx.doi.org/10.1093/nar/gkt148.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4549-4564
-
-
Barquist, L.1
Langridge, G.C.2
Turner, D.J.3
Phan, M.D.4
Turner, A.K.5
Bateman, A.6
-
16
-
-
80052415909
-
The essential genome of a bacterium
-
PMID:21878915
-
Christen B, Abeliuk E, Collier JM, Kalogeraki VS, Passarelli B, Coller JA, et al. The essential genome of a bacterium. Mol Syst Biol 2011; 7:528; PMID:21878915; http://dx.doi.org/10.1038/msb.2011.58.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 528
-
-
Christen, B.1
Abeliuk, E.2
Collier, J.M.3
Kalogeraki, V.S.4
Passarelli, B.5
Coller, J.A.6
-
17
-
-
0031833703
-
Factors affecting transposition of the Himar1 mariner transposon in vitro
-
PMID:9584095
-
Lampe DJ, Grant TE, Robertson HM. Factors affecting transposition of the Himar1 mariner transposon in vitro. Genetics 1998; 149:179-87; PMID:9584095.
-
(1998)
Genetics
, vol.149
, pp. 179-187
-
-
Lampe, D.J.1
Grant, T.E.2
Robertson, H.M.3
-
18
-
-
0033574065
-
In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria
-
PMID:9990078
-
Rubin EJ, Akerley BJ, Novik VN, Lampe DJ, Husson RN, Mekalanos JJ. In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria. Proc Natl Acad Sci USA 1999; 96:1645-50; PMID:9990078; http://dx.doi.org/10.1073/pnas.96.4.1645.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 1645-1650
-
-
Rubin, E.J.1
Akerley, B.J.2
Novik, V.N.3
Lampe, D.J.4
Husson, R.N.5
Mekalanos, J.J.6
-
19
-
-
0029818461
-
A purified mariner transposase is sufficient to mediate transposition in vitro
-
PMID:8895590
-
Lampe DJ, Churchill ME, Robertson HM. A purified mariner transposase is sufficient to mediate transposition in vitro. EMBO J 1996; 15:5470-9; PMID:8895590.
-
(1996)
EMBO J
, vol.15
, pp. 5470-5479
-
-
Lampe, D.J.1
Churchill, M.E.2
Robertson, H.M.3
-
20
-
-
36849090593
-
Natural genetic transformation: Prevalence, mechanisms and function
-
PMID:17997281
-
Johnsborg O, Eldholm V, Håvarstein LS. Natural genetic transformation: prevalence, mechanisms and function. Res Microbiol 2007; 158:767-78; PMID:17997281; http://dx.doi.org/10.1016/j.resmic.2007.09.004.
-
(2007)
Res Microbiol
, vol.158
, pp. 767-778
-
-
Johnsborg, O.1
Eldholm, V.2
Håvarstein, L.S.3
-
21
-
-
0032571247
-
Tn5 in vitro transposition
-
PMID:9516433
-
Goryshin IY, Reznikoff WS. Tn5 in vitro transposition. J Biol Chem 1998; 273:7367-74; PMID:9516433; http://dx.doi.org/10.1074/jbc.273.13.7367.
-
(1998)
J Biol Chem
, vol.273
, pp. 7367-7374
-
-
Goryshin, I.Y.1
Reznikoff, W.S.2
-
22
-
-
84870479250
-
A fine scale phenotype-genotype virulence map of a bacterial pathogen
-
PMID:22826510
-
van Opijnen T, Camilli A. A fine scale phenotype-genotype virulence map of a bacterial pathogen. Genome Res 2012; 22:2541-51; PMID:22826510; http://dx.doi.org/10.1101/gr.137430.112.
-
(2012)
Genome Res
, vol.22
, pp. 2541-2551
-
-
Van Opijnen, T.1
Camilli, A.2
-
23
-
-
84866887386
-
Global assessment of genomic regions required for growth in Mycobacterium tuberculosis
-
PMID:23028335
-
Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, Sacchettini JC, et al. Global assessment of genomic regions required for growth in Mycobacterium tuberculosis. PLoS Pathog 2012; 8:e1002946; PMID:23028335; http://dx.doi.org/10.1371/journal.ppat.1002946.
-
(2012)
PLoS Pathog
, vol.8
-
-
Zhang, Y.J.1
Ioerger, T.R.2
Huttenhower, C.3
Long, J.E.4
Sassetti, C.M.5
Sacchettini, J.C.6
-
24
-
-
79952779354
-
Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle
-
PMID:21278291
-
Eckert SE, Dziva F, Chaudhuri RR, Langridge GC, Turner DJ, Pickard DJ, et al. Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle. J Bacteriol 2011; 193:1771-6; PMID:21278291; http://dx.doi.org/10.1128/JB.01292-10.
-
(2011)
J Bacteriol
, vol.193
, pp. 1771-1776
-
-
Eckert, S.E.1
Dziva, F.2
Chaudhuri, R.R.3
Langridge, G.C.4
Turner, D.J.5
Pickard, D.J.6
-
25
-
-
9144262494
-
Identification of escherichia coli O157:H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis
-
PMID:15528651
-
Dziva F, van Diemen PM, Stevens MP, Smith AJ, Wallis TS. Identification of Escherichia coli O157:H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis. Microbiology 2004; 150:3631-45; PMID:15528651; http://dx.doi.org/10.1099/mic.0.27448-0.
-
(2004)
Microbiology
, vol.150
, pp. 3631-3645
-
-
Dziva, F.1
Van Diemen, P.M.2
Stevens, M.P.3
Smith, A.J.4
Wallis, T.S.5
-
26
-
-
0345701347
-
Genes required for mycobacterial growth defined by high density mutagenesis
-
PMID:12657046
-
Sassetti CM, Boyd DH, Rubin EJ. Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 2003; 48:77-84; PMID:12657046; http://dx.doi.org/10.1046/j.1365-2958.2003.03425.x.
-
(2003)
Mol Microbiol
, vol.48
, pp. 77-84
-
-
Sassetti, C.M.1
Boyd, D.H.2
Rubin, E.J.3
-
27
-
-
80053459692
-
High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism
-
PMID:21980284
-
Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, Sassetti CM. High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. PLoS Pathog 2011; 7:e1002251; PMID:21980284; http://dx.doi.org/10.1371/journal.ppat.1002251.
-
(2011)
PLoS Pathog
, vol.7
-
-
Griffin, J.E.1
Gawronski, J.D.2
Dejesus, M.A.3
Ioerger, T.R.4
Akerley, B.J.5
Sassetti, C.M.6
-
28
-
-
10744229659
-
Comprehensive transposon mutant library of pseudomonas aeruginosa
-
PMID:14617778
-
Jacobs MA, Alwood A, Thaipisuttikul I, Spencer D, Haugen E, Ernst S, et al. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 2003; 100:14339-44; PMID:14617778; http://dx.doi.org/10.1073/pnas. 2036282100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14339-14344
-
-
Jacobs, M.A.1
Alwood, A.2
Thaipisuttikul, I.3
Spencer, D.4
Haugen, E.5
Ernst, S.6
-
29
-
-
31044439550
-
Essential genes of a minimal bacterium
-
PMID:16407165
-
Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, et al. Essential genes of a minimal bacterium. Proc Natl Acad Sci USA 2006; 103:425-30; PMID:16407165; http://dx.doi.org/10.1073/pnas.0510013103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 425-430
-
-
Glass, J.I.1
Assad-Garcia, N.2
Alperovich, N.3
Yooseph, S.4
Lewis, M.R.5
Maruf, M.6
-
30
-
-
84864974258
-
ESSENTIALS: Software for rapid analysis of high throughput transposon insertion sequencing data
-
PMID:22900082
-
Zomer A, Burghout P, Bootsma HJ, Hermans PW, van Hijum SA. ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data. PLoS One 2012; 7:e43012; PMID:22900082; http://dx.doi.org/10.1371/journal. pone.0043012.
-
(2012)
PLoS One
, vol.7
-
-
Zomer, A.1
Burghout, P.2
Bootsma, H.J.3
Hermans, P.W.4
Van Hijum, S.A.5
-
31
-
-
84875136989
-
Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries
-
PMID:23361328
-
DeJesus MA, Zhang YJ, Sassetti CM, Rubin EJ, Sacchettini JC, Ioerger TR. Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries. Bioinformatics 2013; 29:695-703; PMID:23361328; http://dx.doi.org/10.1093/bioinformatics/btt043.
-
(2013)
Bioinformatics
, vol.29
, pp. 695-703
-
-
DeJesus, M.A.1
Zhang, Y.J.2
Sassetti, C.M.3
Rubin, E.J.4
Sacchettini, J.C.5
Ioerger, T.R.6
-
32
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
PMID:16933988
-
Lucchini S, Rowley G, Goldberg MD, Hurd D, Harrison M, Hinton JC. H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog 2006; 2:e81; PMID:16933988; http://dx.doi.org/10.1371/journal.ppat.0020081.
-
(2006)
PLoS Pathog
, vol.2
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.6
-
33
-
-
33746008173
-
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
-
PMID:16763111
-
Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ, et al. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 2006; 313:236-8; PMID:16763111; http://dx.doi.org/10.1126/ science.1128794.
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
Porwollik, S.2
Wang, Y.3
McClelland, M.4
Rosen, H.5
Libby, S.J.6
-
34
-
-
34748820665
-
Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: Transposon exclusion by high-density DNA binding proteins
-
PMID:17850262
-
Manna D, Porwollik S, McClelland M, Tan R, Higgins NP. Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: Transposon exclusion by high-density DNA binding proteins. Mol Microbiol 2007; 66:315-28; PMID:17850262; http://dx.doi.org/10.1111/j.1365-2958.2007.05915.x.
-
(2007)
Mol Microbiol
, vol.66
, pp. 315-328
-
-
Manna, D.1
Porwollik, S.2
McClelland, M.3
Tan, R.4
Higgins, N.P.5
-
35
-
-
84861117362
-
Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium
-
PMID:22367088
-
Khatiwara A, Jiang T, Sung SS, Dawoud T, Kim JN, Bhattacharya D, et al. Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium. Appl Environ Microbiol 2012; 78:3098-107; PMID:22367088; http://dx.doi.org/10.1128/AEM.06865-11.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3098-3107
-
-
Khatiwara, A.1
Jiang, T.2
Sung, S.S.3
Dawoud, T.4
Kim, J.N.5
Bhattacharya, D.6
-
36
-
-
84874714760
-
A genomewide mutagenesis screen identifies multiple genes contributing to Vi capsular expression in Salmonella enterica serovar Typhi
-
PMID:23316043
-
Pickard D, Kingsley RA, Hale C, Turner K, Sivaraman K, Wetter M, et al. A genomewide mutagenesis screen identifies multiple genes contributing to Vi capsular expression in Salmonella enterica serovar Typhi. J Bacteriol 2013; 195:1320-6; PMID:23316043; http://dx.doi.org/10.1128/JB.01632-12.
-
(2013)
J Bacteriol
, vol.195
, pp. 1320-1326
-
-
Pickard, D.1
Kingsley, R.A.2
Hale, C.3
Turner, K.4
Sivaraman, K.5
Wetter, M.6
-
37
-
-
77953809752
-
Evolutionary microbial genomics: Insights into bacterial host adaptation
-
PMID:20517341
-
Toft C, Andersson SG. Evolutionary microbial genomics: insights into bacterial host adaptation. Nat Rev Genet 2010; 11:465-75; PMID:20517341; http://dx.doi.org/10.1038/nrg2798.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 465-475
-
-
Toft, C.1
Andersson, S.G.2
-
38
-
-
41749103319
-
Small non-coding RNAs in caulobacter crescentus
-
PMID:18373523
-
Landt SG, Abeliuk E, McGrath PT, Lesley JA, McAdams HH, Shapiro L. Small non-coding RNAs in Caulobacter crescentus. Mol Microbiol 2008; 68:600-14; PMID:18373523; http://dx.doi.org/10.1111/j.1365-2958.2008.06172.x.
-
(2008)
Mol Microbiol
, vol.68
, pp. 600-614
-
-
Landt, S.G.1
Abeliuk, E.2
McGrath, P.T.3
Lesley, J.A.4
McAdams, H.H.5
Shapiro, L.6
-
39
-
-
84860731440
-
Non-coding RNA and its potential role in mycobacterium tuberculosis pathogenesis
-
PMID:22546938
-
Arnvig K, Young D. Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis. RNA Biol 2012; 9:427-36; PMID:22546938; http://dx.doi.org/10.4161/rna.20105.
-
(2012)
RNA Biol
, vol.9
, pp. 427-436
-
-
Arnvig, K.1
Young, D.2
-
40
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
PMID:22538806
-
Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, et al. The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci USA 2012; 109:E1277-86; PMID:22538806; http://dx.doi.org/10.1073/pnas.1201061109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Kröger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
Hokamp, K.6
-
41
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Database issue, PMID:23125362
-
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, et al. Rfam 11.0: 10 years of RNA families. Nucleic Acids Res 2013; 41(Database issue):D226-32; PMID:23125362; http://dx.doi.org/10.1093/nar/gks1005.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.P.6
-
42
-
-
80052526246
-
Genomewide detection of novel regulatory RNAs in E. Coli
-
PMID:21665928
-
Raghavan R, Groisman EA, Ochman H. Genomewide detection of novel regulatory RNAs in E. coli. Genome Res 2011; 21:1487-97; PMID:21665928; http://dx.doi.org/10.1101/gr.119370.110.
-
(2011)
Genome Res
, vol.21
, pp. 1487-1497
-
-
Raghavan, R.1
Groisman, E.A.2
Ochman, H.3
-
43
-
-
77955844897
-
Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
-
PMID:20460466
-
Chinni SV, Raabe CA, Zakaria R, Randau G, Hoe CH, Zemann A, et al. Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi. Nucleic Acids Res 2010; 38:5893-908; PMID:20460466; http://dx.doi.org/10.1093/nar/gkq281.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5893-5908
-
-
Chinni, S.V.1
Raabe, C.A.2
Zakaria, R.3
Randau, G.4
Hoe, C.H.5
Zemann, A.6
-
44
-
-
67349278437
-
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes
-
PMID:19333007
-
Sittka A, Sharma CM, Rolle K, Vogel J. Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol 2009; 6:266-75; PMID:19333007; http://dx.doi.org/10.4161/rna.6.3.8332.
-
(2009)
RNA Biol
, vol.6
, pp. 266-275
-
-
Sittka, A.1
Sharma, C.M.2
Rolle, K.3
Vogel, J.4
-
45
-
-
84876050948
-
Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria
-
PMID:23396277
-
Fu Y, Deiorio-Haggar K, Anthony J, Meyer MM. Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria. Nucleic Acids Res 2013; 41:3491-503; PMID:23396277; http://dx.doi.org/10.1093/nar/gkt055.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3491-3503
-
-
Fu, Y.1
Deiorio-Haggar, K.2
Anthony, J.3
Meyer, M.M.4
-
46
-
-
84864590175
-
Control of virulence by small RNAs in Streptococcus pneumoniae
-
PMID:22807675
-
Mann B, van Opijnen T, Wang J, Obert C, Wang YD, Carter R, et al. Control of virulence by small RNAs in Streptococcus pneumoniae. PLoS Pathog 2012; 8:e1002788; PMID:22807675; http://dx.doi.org/10.1371/journal.ppat.1002788.
-
(2012)
PLoS Pathog
, vol.8
-
-
Mann, B.1
Van Opijnen, T.2
Wang, J.3
Obert, C.4
Wang, Y.D.5
Carter, R.6
-
47
-
-
0033604566
-
Large-scale analysis of the yeast genome by transposon tagging and gene disruption
-
PMID:10586881
-
Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, et al. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 1999; 402:413-8; PMID:10586881; http://dx.doi.org/10.1038/ 46558.
-
(1999)
Nature
, vol.402
, pp. 413-418
-
-
Ross-Macdonald, P.1
Coelho, P.S.2
Roemer, T.3
Agarwal, S.4
Kumar, A.5
Jansen, R.6
-
48
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
PMID:20033048
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 2009; 462:1056-60; PMID:20033048; http://dx.doi.org/10.1038/nature08656.
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
-
49
-
-
57649123534
-
Global phenotypic characterization of bacteria
-
PMID:19054113
-
Bochner BR. Global phenotypic characterization of bacteria. FEMS Microbiol Rev 2009; 33:191-205; PMID:19054113; http://dx.doi.org/10.1111/j.1574- 6976.2008.00149.x.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 191-205
-
-
Bochner, B.R.1
-
50
-
-
78650475398
-
Phenotypic landscape of a bacterial cell
-
PMID:21185072
-
Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, et al. Phenotypic landscape of a bacterial cell. Cell 2011; 144:143-56; PMID:21185072; http://dx.doi.org/10.1016/j.cell.2010.11.052.
-
(2011)
Cell
, vol.144
, pp. 143-156
-
-
Nichols, R.J.1
Sen, S.2
Choo, Y.J.3
Beltrao, P.4
Zietek, M.5
Chaba, R.6
-
51
-
-
84867449264
-
Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq
-
PMID:22925268
-
Brutinel ED, Gralnick JA. Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq. Mol Microbiol 2012; 86:273-83; PMID:22925268; http://dx.doi.org/10.1111/j.1365-2958.2012.08196.x.
-
(2012)
Mol Microbiol
, vol.86
, pp. 273-283
-
-
Brutinel, E.D.1
Gralnick, J.A.2
-
52
-
-
84868260243
-
Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis
-
PMID:23114059
-
Klein BA, Tenorio EL, Lazinski DW, Camilli A, Duncan MJ, Hu LT. Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis. BMC Genomics 2012; 13:578; PMID:23114059; http://dx.doi.org/10.1186/ 1471-2164-13-578.
-
(2012)
BMC Genomics
, vol.13
, pp. 578
-
-
Klein, B.A.1
Tenorio, E.L.2
Lazinski, D.W.3
Camilli, A.4
Duncan, M.J.5
Hu, L.T.6
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