-
1
-
-
0026686793
-
Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices
-
Lemmon MA, et al. (1992) Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices. J Biol Chem 267(11):7683-7689.
-
(1992)
J Biol Chem
, vol.267
, Issue.11
, pp. 7683-7689
-
-
Lemmon, M.A.1
-
2
-
-
0034711958
-
Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions
-
Senes A, Gerstein M, Engelman DM (2000) Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. J Mol Biol 296(3):921-936.
-
(2000)
J Mol Biol
, vol.296
, Issue.3
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engelman, D.M.3
-
3
-
-
0028063482
-
Structural organization of the pentameric transmembrane alpha-helices of phospholamban, a cardiac ion channel
-
Arkin IT, et al. (1994) Structural organization of the pentameric transmembrane alpha-helices of phospholamban, a cardiac ion channel. EMBO J 13(20):4757-4764.
-
(1994)
EMBO J
, vol.13
, Issue.20
, pp. 4757-4764
-
-
Arkin, I.T.1
-
4
-
-
0030881872
-
A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity
-
Pinto LH, et al. (1997) A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity. Proc Natl Acad Sci USA 94(21):11301-11306.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, Issue.21
, pp. 11301-11306
-
-
Pinto, L.H.1
-
5
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
Russ WP, Engelman DM (2000) The GxxxG motif: A framework for transmembrane helix-helix association. J Mol Biol 296(3):911-919.
-
(2000)
J Mol Biol
, vol.296
, Issue.3
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
6
-
-
4143085058
-
Folding of helical membrane proteins: The role of polar, GxxxG-like and proline motifs
-
Senes A, Engel DE, DeGrado WF (2004) Folding of helical membrane proteins: The role of polar, GxxxG-like and proline motifs. Curr Opin Struct Biol 14(4):465-479.
-
(2004)
Curr Opin Struct Biol
, vol.14
, Issue.4
, pp. 465-479
-
-
Senes, A.1
Engel, D.E.2
DeGrado, W.F.3
-
7
-
-
60849131737
-
A helix-to-coil transition at the e-cut site in the transmembrane dimer of the amyloid precursor protein is required for proteolysis
-
Sato T, et al. (2009) A helix-to-coil transition at the e-cut site in the transmembrane dimer of the amyloid precursor protein is required for proteolysis. Proc Natl Acad Sci USA 106(5):1421-1426.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.5
, pp. 1421-1426
-
-
Sato, T.1
-
8
-
-
70249091154
-
Transmembrane structures of amyloid precursor protein dimer predicted by replica-exchange molecular dynamics simulations
-
Miyashita N, Straub JE, Thirumalai D, Sugita Y (2009) Transmembrane structures of amyloid precursor protein dimer predicted by replica-exchange molecular dynamics simulations. J Am Chem Soc 131(10):3438-3439.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.10
, pp. 3438-3439
-
-
Miyashita, N.1
Straub, J.E.2
Thirumalai, D.3
Sugita, Y.4
-
9
-
-
84898080760
-
Complex relationships between substrate sequence and sensitivity to alterations in γ-secretase processivity induced by γ-secretase modulators
-
Jung JI, et al. (2014) Complex relationships between substrate sequence and sensitivity to alterations in γ-secretase processivity induced by γ-secretase modulators. Biochemistry 53(12):1947-1957.
-
(2014)
Biochemistry
, vol.53
, Issue.12
, pp. 1947-1957
-
-
Jung, J.I.1
-
10
-
-
84876797754
-
Substrate determinants in the C99 juxtamembrane domains differentially affect γ-secretase cleavage specificity and modulator pharmacology
-
Ousson S, et al. (2013) Substrate determinants in the C99 juxtamembrane domains differentially affect γ-secretase cleavage specificity and modulator pharmacology. J Neurochem 125(4):610-619.
-
(2013)
J Neurochem
, vol.125
, Issue.4
, pp. 610-619
-
-
Ousson, S.1
-
11
-
-
36849084471
-
Amyloid β-protein precursor juxtamembrane domain regulates specificity of γ-secretase-dependent cleavages
-
Ren Z, Schenk D, Basi GS, Shapiro IP (2007) Amyloid β-protein precursor juxtamembrane domain regulates specificity of γ-secretase-dependent cleavages. J Biol Chem 282(48):35350-35360.
-
(2007)
J Biol Chem
, vol.282
, Issue.48
, pp. 35350-35360
-
-
Ren, Z.1
Schenk, D.2
Basi, G.S.3
Shapiro, I.P.4
-
12
-
-
0030720936
-
Mutations in the transmembrane domain of APP altering γ-secretase specificity
-
Lichtenthaler SF, Ida N, Multhaup G, Masters CL, Beyreuther K (1997) Mutations in the transmembrane domain of APP altering γ-secretase specificity. Biochemistry 36(49): 15396-15403.
-
(1997)
Biochemistry
, vol.36
, Issue.49
, pp. 15396-15403
-
-
Lichtenthaler, S.F.1
Ida, N.2
Multhaup, G.3
Masters, C.L.4
Beyreuther, K.5
-
13
-
-
0033597105
-
γ-Secretase, evidence for multiple proteolytic activities and influence of membrane positioning of substrate on generation of amyloid β peptides of varying length
-
Murphy MP, et al. (1999) γ-Secretase, evidence for multiple proteolytic activities and influence of membrane positioning of substrate on generation of amyloid β peptides of varying length. J Biol Chem 274(17):11914-11923.
-
(1999)
J Biol Chem
, vol.274
, Issue.17
, pp. 11914-11923
-
-
Murphy, M.P.1
-
14
-
-
0037421206
-
Amyloidogenic processing of the Alzheimer β-amyloid precursor protein depends on lipid rafts
-
Ehehalt R, Keller P, Haass C, Thiele C, Simons K (2003) Amyloidogenic processing of the Alzheimer β-amyloid precursor protein depends on lipid rafts. J Cell Biol 160(1): 113-123.
-
(2003)
J Cell Biol
, vol.160
, Issue.1
, pp. 113-123
-
-
Ehehalt, R.1
Keller, P.2
Haass, C.3
Thiele, C.4
Simons, K.5
-
15
-
-
84862300133
-
Generation of Alzheimer disease-associated amyloid β42/43 peptide by γ-secretase can be inhibited directly by modulation of membrane thickness
-
Winkler E, et al. (2012) Generation of Alzheimer disease-associated amyloid β42/43 peptide by γ-secretase can be inhibited directly by modulation of membrane thickness. J Biol Chem 287(25):21326-21334.
-
(2012)
J Biol Chem
, vol.287
, Issue.25
, pp. 21326-21334
-
-
Winkler, E.1
-
16
-
-
84944096738
-
Homodimerization protects the amyloid precursor protein c99 fragment from cleavage by γ-secretase
-
Winkler E, Julius A, Steiner H, Langosch D (2015) Homodimerization protects the amyloid precursor protein c99 fragment from cleavage by γ-secretase. Biochemistry 54(40):6149-6152.
-
(2015)
Biochemistry
, vol.54
, Issue.40
, pp. 6149-6152
-
-
Winkler, E.1
Julius, A.2
Steiner, H.3
Langosch, D.4
-
17
-
-
84881040452
-
Competition between homodimerization and cholesterol binding to the C99 domain of the amyloid precursor protein
-
Song Y, Hustedt EJ, Brandon S, Sanders CR (2013) Competition between homodimerization and cholesterol binding to the C99 domain of the amyloid precursor protein. Biochemistry 52(30):5051-5064.
-
(2013)
Biochemistry
, vol.52
, Issue.30
, pp. 5051-5064
-
-
Song, Y.1
Hustedt, E.J.2
Brandon, S.3
Sanders, C.R.4
-
18
-
-
84941955419
-
Analysis by a highly sensitive split luciferase assay of the regions involved in APP dimerization and its impact on processing
-
Decock M, et al. (2015) Analysis by a highly sensitive split luciferase assay of the regions involved in APP dimerization and its impact on processing. FEBS Open Bio 5(1): 763-773.
-
(2015)
FEBS Open Bio
, vol.5
, Issue.1
, pp. 763-773
-
-
Decock, M.1
-
19
-
-
71749085062
-
Structures of β-amyloid peptide 1-40, 1-42, and 1-55-the 672-726 fragment of APP-in a membrane environment with implications for interactions with γ-secretase
-
Miyashita N, Straub JE, Thirumalai D (2009) Structures of β-amyloid peptide 1-40, 1-42, and 1-55-the 672-726 fragment of APP-in a membrane environment with implications for interactions with γ-secretase. J Am Chem Soc 131(49):17843-17852.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.49
, pp. 17843-17852
-
-
Miyashita, N.1
Straub, J.E.2
Thirumalai, D.3
-
20
-
-
84873819727
-
The backbone dynamics of the amyloid precursor protein transmembrane helix provides a rationale for the sequential cleavage mechanism of γ-secretase
-
Pester O, et al. (2013) The backbone dynamics of the amyloid precursor protein transmembrane helix provides a rationale for the sequential cleavage mechanism of γ-secretase. J Am Chem Soc 135(4):1317-1329.
-
(2013)
J Am Chem Soc
, vol.135
, Issue.4
, pp. 1317-1329
-
-
Pester, O.1
-
21
-
-
84896692890
-
Perturbations of the straight transmembrane α-helical structure of the amyloid precursor protein affect its processing by γ-secretase
-
Lemmin T, Dimitrov M, Fraering PC, Dal Peraro M (2014) Perturbations of the straight transmembrane α-helical structure of the amyloid precursor protein affect its processing by γ-secretase. J Biol Chem 289(10):6763-6774.
-
(2014)
J Biol Chem
, vol.289
, Issue.10
, pp. 6763-6774
-
-
Lemmin, T.1
Dimitrov, M.2
Fraering, P.C.3
Dal Peraro, M.4
-
22
-
-
84861675099
-
The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol
-
Barrett PJ, et al. (2012) The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol. Science 336(6085):1168-1171.
-
(2012)
Science
, vol.336
, Issue.6085
, pp. 1168-1171
-
-
Barrett, P.J.1
-
23
-
-
84861971120
-
Dimeric structure of transmembrane domain of amyloid precursor protein in micellar environment
-
Nadezhdin KD, Bocharova OV, Bocharov EV, Arseniev AS (2012) Dimeric structure of transmembrane domain of amyloid precursor protein in micellar environment. FEBS Lett 586(12):1687-1692.
-
(2012)
FEBS Lett
, vol.586
, Issue.12
, pp. 1687-1692
-
-
Nadezhdin, K.D.1
Bocharova, O.V.2
Bocharov, E.V.3
Arseniev, A.S.4
-
24
-
-
79955473763
-
Molecular determinants and thermodynamics of the amyloid precursor protein transmembrane domain implicated in Alzheimer's disease
-
Wang H, et al. (2011) Molecular determinants and thermodynamics of the amyloid precursor protein transmembrane domain implicated in Alzheimer's disease. J Mol Biol 408(5):879-895.
-
(2011)
J Mol Biol
, vol.408
, Issue.5
, pp. 879-895
-
-
Wang, H.1
-
25
-
-
84892958093
-
Transmembrane fragment structures of amyloid precursor protein depend on membrane surface curvature
-
Dominguez L, Meredith SC, Straub JE, Thirumalai D (2014) Transmembrane fragment structures of amyloid precursor protein depend on membrane surface curvature. JAm Chem Soc 136(3):854-857.
-
(2014)
J Am Chem Soc
, vol.136
, Issue.3
, pp. 854-857
-
-
Dominguez, L.1
Meredith, S.C.2
Straub, J.E.3
Thirumalai, D.4
-
26
-
-
84903973868
-
Structural heterogeneity in transmembrane amyloid precursor protein homodimer is a consequence of environmental selection
-
Dominguez L, Foster L, Meredith SC, Straub JE, Thirumalai D (2014) Structural heterogeneity in transmembrane amyloid precursor protein homodimer is a consequence of environmental selection. J Am Chem Soc 136(27):9619-9626.
-
(2014)
J Am Chem Soc
, vol.136
, Issue.27
, pp. 9619-9626
-
-
Dominguez, L.1
Foster, L.2
Meredith, S.C.3
Straub, J.E.4
Thirumalai, D.5
-
27
-
-
79551663580
-
Evidence from solid-state NMR for nonhelical conformations in the transmembrane domain of the amyloid precursor protein
-
Lu JX, Yau WM, Tycko R (2011) Evidence from solid-state NMR for nonhelical conformations in the transmembrane domain of the amyloid precursor protein. Biophys J 100(3):711-719.
-
(2011)
Biophys J
, vol.100
, Issue.3
, pp. 711-719
-
-
Lu, J.X.1
Yau, W.M.2
Tycko, R.3
-
28
-
-
84896507992
-
Impact of bilayer lipid composition on the structure and topology of the transmembrane amyloid precursor C99 protein
-
Song Y, Mittendorf KF, Lu Z, Sanders CR (2014) Impact of bilayer lipid composition on the structure and topology of the transmembrane amyloid precursor C99 protein. J Am Chem Soc 136(11):4093-4096.
-
(2014)
J Am Chem Soc
, vol.136
, Issue.11
, pp. 4093-4096
-
-
Song, Y.1
Mittendorf, K.F.2
Lu, Z.3
Sanders, C.R.4
-
29
-
-
51549106517
-
Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): Does APP function as a cholesterol sensor?
-
Beel AJ, et al. (2008) Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): Does APP function as a cholesterol sensor? Biochemistry 47(36):9428-9446.
-
(2008)
Biochemistry
, vol.47
, Issue.36
, pp. 9428-9446
-
-
Beel, A.J.1
-
30
-
-
0031027931
-
The lateral pressure profile in membranes: A physical mechanism of general anesthesia
-
Cantor RS (1997) The lateral pressure profile in membranes: A physical mechanism of general anesthesia. Biochemistry 36(9):2339-2344.
-
(1997)
Biochemistry
, vol.36
, Issue.9
, pp. 2339-2344
-
-
Cantor, R.S.1
-
31
-
-
0033028551
-
Lipid composition and the lateral pressure profile in bilayers
-
Cantor RS (1999) Lipid composition and the lateral pressure profile in bilayers. Biophys J 76(5):2625-2639.
-
(1999)
Biophys J
, vol.76
, Issue.5
, pp. 2625-2639
-
-
Cantor, R.S.1
-
32
-
-
0032857624
-
The influence of membrane lateral pressures on simple geometric models of protein conformational equilibria
-
Cantor RS (1999) The influence of membrane lateral pressures on simple geometric models of protein conformational equilibria. Chem Phys Lipids 101(1):45-56.
-
(1999)
Chem Phys Lipids
, vol.101
, Issue.1
, pp. 45-56
-
-
Cantor, R.S.1
-
33
-
-
0001098317
-
Lateral pressures in cell membranes: A mechanism for modulation of protein function
-
Cantor RS (1997) Lateral pressures in cell membranes: A mechanism for modulation of protein function. J Phys Chem B 101(10):1723-1725.
-
(1997)
J Phys Chem B
, vol.101
, Issue.10
, pp. 1723-1725
-
-
Cantor, R.S.1
-
34
-
-
0036226098
-
Size distribution of barrel-stave aggregates of membrane peptides: Influence of the bilayer lateral pressure profile
-
Cantor RS (2002) Size distribution of barrel-stave aggregates of membrane peptides: Influence of the bilayer lateral pressure profile. Biophys J 82(5):2520-2525.
-
(2002)
Biophys J
, vol.82
, Issue.5
, pp. 2520-2525
-
-
Cantor, R.S.1
-
35
-
-
53249119350
-
Helix-helix interactions in membrane proteins: Coarse-grained simulations of glycophorin a helix dimerization
-
Psachoulia E, Fowler PW, Bond PJ, Sansom MS (2008) Helix-helix interactions in membrane proteins: Coarse-grained simulations of glycophorin a helix dimerization. Biochemistry 47(40):10503-10512.
-
(2008)
Biochemistry
, vol.47
, Issue.40
, pp. 10503-10512
-
-
Psachoulia, E.1
Fowler, P.W.2
Bond, P.J.3
Sansom, M.S.4
-
36
-
-
0032080907
-
Interaction of transmembrane helices by a knobs-intoholes packing characteristic of soluble coiled coils
-
Langosch D, Heringa J (1998) Interaction of transmembrane helices by a knobs-intoholes packing characteristic of soluble coiled coils. Proteins 31(2):150-159.
-
(1998)
Proteins
, vol.31
, Issue.2
, pp. 150-159
-
-
Langosch, D.1
Heringa, J.2
-
37
-
-
0032817780
-
Helix packing in polytopic membrane proteins: Role of glycine in transmembrane helix association
-
Javadpour MM, Eilers M, Groesbeek M, Smith SO (1999) Helix packing in polytopic membrane proteins: Role of glycine in transmembrane helix association. Biophys J 77(3):1609-1618.
-
(1999)
Biophys J
, vol.77
, Issue.3
, pp. 1609-1618
-
-
Javadpour, M.M.1
Eilers, M.2
Groesbeek, M.3
Smith, S.O.4
-
38
-
-
0035252931
-
Coiled coils: A highly versatile protein folding motif
-
Burkhard P, Stetefeld J, Strelkov SV (2001) Coiled coils: A highly versatile protein folding motif. Trends Cell Biol 11(2):82-88.
-
(2001)
Trends Cell Biol
, vol.11
, Issue.2
, pp. 82-88
-
-
Burkhard, P.1
Stetefeld, J.2
Strelkov, S.V.3
-
39
-
-
77749318504
-
Left-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases
-
Bocharov EV, et al. (2010) Left-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases. Biophys J 98(5):881-889.
-
(2010)
Biophys J
, vol.98
, Issue.5
, pp. 881-889
-
-
Bocharov, E.V.1
-
40
-
-
0037013327
-
Intracellular amyloid-β 1-42, but not extracellular soluble amyloid-β peptides, induces neuronal apoptosis
-
Kienlen-Campard P, Miolet S, Tasiaux B, Octave JN (2002) Intracellular amyloid-β 1-42, but not extracellular soluble amyloid-β peptides, induces neuronal apoptosis. J Biol Chem 277(18):15666-15670.
-
(2002)
J Biol Chem
, vol.277
, Issue.18
, pp. 15666-15670
-
-
Kienlen-Campard, P.1
Miolet, S.2
Tasiaux, B.3
Octave, J.N.4
-
41
-
-
77953582321
-
What is the role of amyloid precursor protein dimerization?
-
Khalifa NB, et al. (2010) What is the role of amyloid precursor protein dimerization? Cell Adhes Migr 4(2):268-272.
-
(2010)
Cell Adhes Migr
, vol.4
, Issue.2
, pp. 268-272
-
-
Khalifa, N.B.1
-
42
-
-
84895768762
-
Familial Alzheimers mutations within apptm increase a β42 production by enhancing accessibility of e-cleavage site
-
Chen W, et al. (2014) Familial Alzheimers mutations within apptm increase a β42 production by enhancing accessibility of e-cleavage site. Nat Commun 5:3037.
-
(2014)
Nat Commun
, vol.5
, pp. 3037
-
-
Chen, W.1
-
43
-
-
33947597857
-
GxxxG motifs within the amyloid precursor protein transmembrane sequence are critical for the etiology of Abeta42
-
Munter LM, et al. (2007) GxxxG motifs within the amyloid precursor protein transmembrane sequence are critical for the etiology of Abeta42. EMBO J 26(6):1702-1712.
-
(2007)
EMBO J
, vol.26
, Issue.6
, pp. 1702-1712
-
-
Munter, L.M.1
-
44
-
-
0035823495
-
Homodimerization of amyloid precursor protein and its implication in the amyloidogenic pathway of Alzheimer's disease
-
Scheuermann S, et al. (2001) Homodimerization of amyloid precursor protein and its implication in the amyloidogenic pathway of Alzheimer's disease. J Biol Chem 276(36):33923-33929.
-
(2001)
J Biol Chem
, vol.276
, Issue.36
, pp. 33923-33929
-
-
Scheuermann, S.1
-
45
-
-
84896691683
-
Conformational changes induced by the A21G Flemish mutation in the amyloid precursor protein lead to increased Aβ production
-
Tang TC, et al. (2014) Conformational changes induced by the A21G Flemish mutation in the amyloid precursor protein lead to increased Aβ production. Structure 22(3): 387-396.
-
(2014)
Structure
, vol.22
, Issue.3
, pp. 387-396
-
-
Tang, T.C.1
-
46
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita Y, Okamoto Y (1999) Replica-exchange molecular dynamics method for protein folding. Chem Phys Lett 314(1):141-151.
-
(1999)
Chem Phys Lett
, vol.314
, Issue.1
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
47
-
-
0141956090
-
Generalized born model with a simple smoothing function
-
Im W, Lee MS, Brooks CL, 3rd (2003) Generalized born model with a simple smoothing function. J Comput Chem 24(14):1691-1702.
-
(2003)
J Comput Chem
, vol.24
, Issue.14
, pp. 1691-1702
-
-
Im, W.1
Lee, M.S.2
Brooks, C.L.3
-
48
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH (2007) The MARTINI force field: Coarse grained model for biomolecular simulations. J Phys Chem B 111(27): 7812-7824.
-
(2007)
J Phys Chem B
, vol.111
, Issue.27
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
De Vries, A.H.5
-
49
-
-
49449113010
-
The martini coarse-grained force field: Extension to proteins
-
Monticelli L, et al. (2008) The martini coarse-grained force field: Extension to proteins. J Chem Theory Comput 4(5):819-834.
-
(2008)
J Chem Theory Comput
, vol.4
, Issue.5
, pp. 819-834
-
-
Monticelli, L.1
-
50
-
-
79954524314
-
From coarse grained to atomistic: A serial multiscale approach to membrane protein simulations
-
Stansfeld PJ, Sansom MS (2011) From coarse grained to atomistic: A serial multiscale approach to membrane protein simulations. J Chem Theory Comput 7(4):1157-1166.
-
(2011)
J Chem Theory Comput
, vol.7
, Issue.4
, pp. 1157-1166
-
-
Stansfeld, P.J.1
Sansom, M.S.2
-
51
-
-
64749106745
-
Systematic multiscale simulation of membrane protein systems
-
Ayton GS, Voth GA (2009) Systematic multiscale simulation of membrane protein systems. Curr Opin Struct Biol 19(2):138-144.
-
(2009)
Curr Opin Struct Biol
, vol.19
, Issue.2
, pp. 138-144
-
-
Ayton, G.S.1
Voth, G.A.2
-
52
-
-
78650384605
-
Recent development in computer simulations of lipid bilayers
-
Lyubartsev AP, Rabinovich AL (2011) Recent development in computer simulations of lipid bilayers. Soft Matter 7(1):25-39.
-
(2011)
Soft Matter
, vol.7
, Issue.1
, pp. 25-39
-
-
Lyubartsev, A.P.1
Rabinovich, A.L.2
-
53
-
-
58149181485
-
Lipids on the move: Simulations of membrane pores, domains, stalks and curves
-
Marrink SJ, de Vries AH, Tieleman DP (2009) Lipids on the move: Simulations of membrane pores, domains, stalks and curves. Biochim Biophys Acta 1788(1):149-168.
-
(2009)
Biochim Biophys Acta
, vol.1788
, Issue.1
, pp. 149-168
-
-
Marrink, S.J.1
De Vries, A.H.2
Tieleman, D.P.3
-
54
-
-
0036667740
-
Modeling the lipid component of membranes
-
Scott HL (2002) Modeling the lipid component of membranes. Curr Opin Struct Biol 12(4):495-502.
-
(2002)
Curr Opin Struct Biol
, vol.12
, Issue.4
, pp. 495-502
-
-
Scott, H.L.1
-
55
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell AD, et al. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B 102(18):3586-3616.
-
(1998)
J Phys Chem B
, vol.102
, Issue.18
, pp. 3586-3616
-
-
MacKerell, A.D.1
-
56
-
-
84908606620
-
CHARMM-GUI Membrane Builder toward realistic biological membrane simulations
-
Wu EL, et al. (2014) CHARMM-GUI Membrane Builder toward realistic biological membrane simulations. J Comput Chem 35(27):1997-2004.
-
(2014)
J Comput Chem
, vol.35
, Issue.27
, pp. 1997-2004
-
-
Wu, E.L.1
-
57
-
-
47149096704
-
CHARMM-GUI: A web-based graphical user interface for CHARMM
-
Jo S, Kim T, Iyer VG, Im W (2008) CHARMM-GUI: A web-based graphical user interface for CHARMM. J Comput Chem 29(11):1859-1865.
-
(2008)
J Comput Chem
, vol.29
, Issue.11
, pp. 1859-1865
-
-
Jo, S.1
Kim, T.2
Iyer, V.G.3
Im, W.4
-
58
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJ, Postma JPM, van Gunsteren WF, DiNola A, Haak J (1984) Molecular dynamics with coupling to an external bath. J Chem Phys 81(8):3684-3690.
-
(1984)
J Chem Phys
, vol.81
, Issue.8
, pp. 3684-3690
-
-
Berendsen, H.J.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
Haak, J.5
-
59
-
-
44449124693
-
Fast procedure for reconstruction of full-atom protein models from reduced representations
-
Rotkiewicz P, Skolnick J (2008) Fast procedure for reconstruction of full-atom protein models from reduced representations. J Comput Chem 29(9):1460-1465.
-
(2008)
J Comput Chem
, vol.29
, Issue.9
, pp. 1460-1465
-
-
Rotkiewicz, P.1
Skolnick, J.2
-
60
-
-
41149134824
-
Automated builder and database of protein/membrane complexes for molecular dynamics simulations
-
Jo S, Kim T, Im W (2007) Automated builder and database of protein/membrane complexes for molecular dynamics simulations. PLoS One 2(9):e880.
-
(2007)
PLoS One
, vol.2
, Issue.9
, pp. e880
-
-
Jo, S.1
Kim, T.2
Im, W.3
|