메뉴 건너뛰기




Volumn 7, Issue AUG2016, 2016, Pages

Transcriptome profiling of taproot reveals complex regulatory networks during taproot thickening in radish (Raphanus sativus L.)

Author keywords

Digital gene expression; Raphanus sativus L; RNA Seq; Taproot; Thickening

Indexed keywords


EID: 84984621338     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2016.01210     Document Type: Article
Times cited : (35)

References (80)
  • 1
    • 84879991999 scopus 로고    scopus 로고
    • Cytokinins: Determinants of sink storage ability
    • Abelenda, J., and Prat, S. (2013). Cytokinins: determinants of sink storage ability. Curr. Biol. 23, R561-R563. doi: 10.1016/j.cub.2013.05.020
    • (2013) Curr. Biol , vol.23 , pp. R561-R563
    • Abelenda, J.1    Prat, S.2
  • 2
    • 6844258836 scopus 로고    scopus 로고
    • Molecular analysis of cellulose biosynthesis in Arabidopsis
    • Arioli, T., Peng, L., Betzner, A. S., Burn, J., Wittke, W., Herth, W., et al. (1998). Molecular analysis of cellulose biosynthesis in Arabidopsis. Science 279, 717-720. doi: 10.1126/science.279.5351.717
    • (1998) Science , vol.279 , pp. 717-720
    • Arioli, T.1    Peng, L.2    Betzner, A.S.3    Burn, J.4    Wittke, W.5    Herth, W.6
  • 3
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S., and Claverie, J. M. (1997). The significance of digital gene expression profiles. Genome Res. 7, 986-995. doi: 10.1101/gr.7.10.986
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 4
    • 0001421179 scopus 로고
    • Effect of calcium on tuberization in potato (Solanum tuberosum L.)
    • Balamani, V., Veluthambi, K., and Poovaiah, B. W. (1986). Effect of calcium on tuberization in potato (Solanum tuberosum L.). Plant Physiol. 80, 856-858. doi: 10.1104/pp.80.4.856
    • (1986) Plant Physiol , vol.80 , pp. 856-858
    • Balamani, V.1    Veluthambi, K.2    Poovaiah, B.W.3
  • 5
    • 84903978303 scopus 로고    scopus 로고
    • MiR396a-mediated Basic helix-loop-helix transcription factor bHLH74 repression acts as a regulator for root growth in Arabidopsis seedlings
    • Bao, M., Bian, H., Zha, Y., Li, F., Sun, Y., Bai, B., et al. (2014). miR396a-mediated Basic helix-loop-helix transcription factor bHLH74 repression acts as a regulator for root growth in Arabidopsis seedlings. Plant Cell Physiol. 55, 1343-1353. doi: 10.1093/pcp/pcu058
    • (2014) Plant Cell Physiol , vol.55 , pp. 1343-1353
    • Bao, M.1    Bian, H.2    Zha, Y.3    Li, F.4    Sun, Y.5    Bai, B.6
  • 6
    • 60449109717 scopus 로고    scopus 로고
    • Hormone interactions at the root apical meristem
    • Benková, E., and Hejátko, J. (2009). Hormone interactions at the root apical meristem. Plant Mol. Biol. 69, 383-396. doi: 10.1007/s11103-008-9393-6
    • (2009) Plant Mol. Biol , vol.69 , pp. 383-396
    • Benková, E.1    Hejátko, J.2
  • 7
    • 84887972062 scopus 로고    scopus 로고
    • Overexpression of miR160 affects root growth and nitrogen-fixing nodule number in Medicago truncatula
    • Bustos Sanmamed, P., Mao, G., Deng, Y., Elouet, M., Khan, G. A., Bazin, J., et al. (2013). Overexpression of miR160 affects root growth and nitrogen-fixing nodule number in Medicago truncatula. Funct. Plant Biol. 40, 1208-1220. doi: 10.1071/FP13123
    • (2013) Funct. Plant Biol , vol.40 , pp. 1208-1220
    • Bustos Sanmamed, P.1    Mao, G.2    Deng, Y.3    Elouet, M.4    Khan, G.A.5    Bazin, J.6
  • 8
    • 33747893836 scopus 로고    scopus 로고
    • Mutant identification and characterization of the laccase gene family in Arabidopsis
    • Cai, X., Davis, E. J., Ballif, J., Liang, M., Bushman, E., Haroldsen, V., et al. (2006). Mutant identification and characterization of the laccase gene family in Arabidopsis. J. Exp. Bot. 57, 2563-2569. doi: 10.1093/jxb/erl022
    • (2006) J. Exp. Bot , vol.57 , pp. 2563-2569
    • Cai, X.1    Davis, E.J.2    Ballif, J.3    Liang, M.4    Bushman, E.5    Haroldsen, V.6
  • 9
    • 39749107291 scopus 로고    scopus 로고
    • Inhibitory response of Raphanus sativus on lipid peroxidation in albino rats
    • Chaturvedi, P. (2008). Inhibitory response of Raphanus sativus on lipid peroxidation in albino rats. Evid. Based Complement Alternat. Med. 5, 55-59. doi: 10.1093/ecam/nel077
    • (2008) Evid. Based Complement Alternat. Med , vol.5 , pp. 55-59
    • Chaturvedi, P.1
  • 10
    • 84879473577 scopus 로고    scopus 로고
    • Genome-wide analysis of differentially expressed genes relevant to rhizome formation in lotus root (Nelumbo nucifera Gaertn)
    • Cheng, L., Li, S., Yin, J., Li, L., and Chen, X. (2013). Genome-wide analysis of differentially expressed genes relevant to rhizome formation in lotus root (Nelumbo nucifera Gaertn). PLoS ONE 8:e67116. doi: 10.1371/journal.pone.0067116
    • (2013) Plos ONE , vol.8
    • Cheng, L.1    Li, S.2    Yin, J.3    Li, L.4    Chen, X.5
  • 11
    • 84897568482 scopus 로고    scopus 로고
    • Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport
    • Chiasson, D. M., Loughlin, P. C., Mazurkiewicz, D., Mohammadidehcheshmeh, M., Fedorova, E. E., Okamoto, M., et al. (2014). Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport. Proc. Nati. Acad. Sci. U.S.A. 111, 4814-4819. doi: 10.1073/pnas.1312801111
    • (2014) Proc. Nati. Acad. Sci. U.S.A. , vol.111 , pp. 4814-4819
    • Chiasson, D.M.1    Loughlin, P.C.2    Mazurkiewicz, D.3    Mohammadidehcheshmeh, M.4    Fedorova, E.E.5    Okamoto, M.6
  • 12
    • 84864446205 scopus 로고    scopus 로고
    • Growth and physiological responses of Chinese cabbage and radish to long-term exposure to elevated carbon dioxide and temperature
    • Choi, E. Y., Seo, T. C., Lee, S. G., Cho, I. H., and Stangoulis, J. (2011). Growth and physiological responses of Chinese cabbage and radish to long-term exposure to elevated carbon dioxide and temperature. Hortic. Environ. Biotechnol. 52, 376-386. doi: 10.1007/s13580-011-0012-0
    • (2011) Hortic. Environ. Biotechnol , vol.52 , pp. 376-386
    • Choi, E.Y.1    Seo, T.C.2    Lee, S.G.3    Cho, I.H.4    Stangoulis, J.5
  • 13
    • 27644525170 scopus 로고    scopus 로고
    • Growth of the plant cell wall
    • Cosgrove, D. J. (2005). Growth of the plant cell wall. Nat. Rev. Mol. Cell Biol. 6, 850-861. doi: 10.1038/nrm1746
    • (2005) Nat. Rev. Mol. Cell Biol , vol.6 , pp. 850-861
    • Cosgrove, D.J.1
  • 15
    • 0030576502 scopus 로고    scopus 로고
    • The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
    • Doctoral thesis, Austria. Di, Wysocka Diller, J., Malamy, J. E., Pysh, L., Helariutta, Y., Freshour, G., et al. (1996). The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86, 423-433. doi: 10.1016/S0092-8674(00)80115-4
    • (1996) Cell , vol.86 , pp. 423-433
    • Thesis, D.1    Di, A.2    Wysocka Diller, J.3    Malamy, J.E.4    Pysh, L.5    Helariutta, Y.6    Freshour, G.7
  • 16
    • 1642567247 scopus 로고    scopus 로고
    • Cell expansion in roots
    • Dolan, L., and Davies, J. (2004). Cell expansion in roots. Curr. Opin. Plant Biol. 7, 33-39. doi: 10.1016/j.pbi.2003.11.006
    • (2004) Curr. Opin. Plant Biol , vol.7 , pp. 33-39
    • Dolan, L.1    Davies, J.2
  • 17
    • 79953122769 scopus 로고    scopus 로고
    • The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses
    • Fernández Calvo, P., Chini, A., Fernández-Barbero, G., Chico, J. M., Gimenez- Ibanez, S., Geerinck, J., et al. (2011). The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. Plant Cell 23, 701-715. doi: 10.1105/tpc.110.080788
    • (2011) Plant Cell , vol.23 , pp. 701-715
    • Fernández Calvo, P.1    Chini, A.2    Fernández-Barbero, G.3    Chico, J.M.4    Gimenez-Ibanez, S.5    Geerinck, J.6
  • 18
    • 0037434644 scopus 로고    scopus 로고
    • Auxin promotes Arabidopsis root growth by modulating gibberellin response
    • Fu, X., and Harberd, N. P. (2003). Auxin promotes Arabidopsis root growth by modulating gibberellin response. Nature 421, 740-743. doi: 10.1038/nature01387
    • (2003) Nature , vol.421 , pp. 740-743
    • Fu, X.1    Harberd, N.P.2
  • 20
    • 79956053248 scopus 로고    scopus 로고
    • Cell number counts-the fw2.2 and CNR genes and implications for controlling plant fruit and organ size
    • Guo, M., and Simmons, C. R. (2011). Cell number counts-the fw2.2 and CNR genes and implications for controlling plant fruit and organ size. Plant Sci. 181, 1-7. doi: 10.1016/j.plantsci.2011.03.010
    • (2011) Plant Sci , vol.181 , pp. 1-7
    • Guo, M.1    Simmons, C.R.2
  • 21
    • 84860319329 scopus 로고    scopus 로고
    • Identification and expression pattern of one stress-responsive NAC gene from Solanum lycopersicum. Mol
    • Han, Q., Zhang, J., Li, H., Luo, Z., Ziaf, K., Ouyang, B., et al. (2012). Identification and expression pattern of one stress-responsive NAC gene from Solanum lycopersicum. Mol. Bio. Rep. 39, 1713-1720. doi: 10.1007/s11033-011-0911-2
    • (2012) Bio. Rep , vol.39 , pp. 1713-1720
    • Han, Q.1    Zhang, J.2    Li, H.3    Luo, Z.4    Ziaf, K.5    Ouyang, B.6
  • 22
    • 58749109950 scopus 로고    scopus 로고
    • A major β- amylase expressed in radish taproots
    • Hara, M., Sawada, T., Ito, A., Ito, F., and Kuboi, T. (2009). A major β- amylase expressed in radish taproots. Food Chem. 114, 523-528. doi: 10.1016/j.foodchem.2008.09.082
    • (2009) Food Chem , vol.114 , pp. 523-528
    • Hara, M.1    Sawada, T.2    Ito, A.3    Ito, F.4    Kuboi, T.5
  • 23
    • 0032818549 scopus 로고    scopus 로고
    • Multiple signaling pathways control tuber induction in potato
    • Jackson, S. (1999). Multiple signaling pathways control tuber induction in potato. Plant Physiol. 119, 111-118. doi: 10.1104/pp.119.1.1
    • (1999) Plant Physiol , vol.119 , pp. 111-118
    • Jackson, S.1
  • 24
    • 84888417322 scopus 로고    scopus 로고
    • Getting to the roots of it: Genetic and hormonal control of root architecture. Front
    • Jung, J. K., and McCouch, S. (2013). Getting to the roots of it: genetic and hormonal control of root architecture. Front. Plant Sci. 4:186. doi: 10.3389/fpls.2013.00186
    • (2013) Plant Sci , vol.4 , pp. 186
    • Jung, J.K.1    McCouch, S.2
  • 25
    • 80051932344 scopus 로고    scopus 로고
    • MicroRNAs as regulators of root development and architecture. Plant Mol
    • Khan, G. A., Declerck, M., Sorin, C., Hartmann, C., Crespi, M., and Lelandais-Brière, C. (2011). MicroRNAs as regulators of root development and architecture. Plant Mol. Biol. 77, 47-58. doi: 10.1007/s11103-011-9793-x
    • (2011) Biol , vol.77 , pp. 47-58
    • Khan, G.A.1    Declerck, M.2    Sorin, C.3    Hartmann, C.4    Crespi, M.5    Lelandais-Brière, C.6
  • 26
    • 0042284497 scopus 로고    scopus 로고
    • The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin- mediated signal transduction in Arabidopsis thaliana
    • Kiba, T., Yamada, H., Sato, S., Kato, T., Tabata, S., Yamashino, T., et al. (2003). The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin- mediated signal transduction in Arabidopsis thaliana. Plant Cell Physiol. 44, 868-874. doi: 10.1093/pcp/pcg108
    • (2003) Plant Cell Physiol , vol.44 , pp. 868-874
    • Kiba, T.1    Yamada, H.2    Sato, S.3    Kato, T.4    Tabata, S.5    Yamashino, T.6
  • 27
    • 0036010195 scopus 로고    scopus 로고
    • Isolation of MADS-box genes from sweet potato (Ipomoea batatas (L.) Lam.) expressed specifically in vegetative tissues
    • Kim, S. H., Mizuno, K., and Fujimura, T. (2002). Isolation of MADS-box genes from sweet potato (Ipomoea batatas (L.) Lam.) expressed specifically in vegetative tissues. Plant Cell Physiol. 43, 314-322. doi: 10.1093/pcp/pcf043<
    • (2002) Plant Cell Physiol , vol.43 , pp. 314-322
    • Kim, S.H.1    Mizuno, K.2    Fujimura, T.3
  • 28
    • 84922020423 scopus 로고    scopus 로고
    • Draft sequences of the Radish (Raphanus sativus L.) genome
    • Kitashiba, H., Li, F., Hirakawa, H., Kawanabe, T., Zou, Z., Hasegawa, Y., et al. (2014). Draft sequences of the Radish (Raphanus sativus L.) genome. DNA Res. 21, 481-490. doi: 10.1093/dnares/dsu014
    • (2014) DNA Res , vol.21 , pp. 481-490
    • Kitashiba, H.1    Li, F.2    Hirakawa, H.3    Kawanabe, T.4    Zou, Z.5    Hasegawa, Y.6
  • 29
    • 84876006391 scopus 로고    scopus 로고
    • Tissue-specific expression of small Auxin up RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis
    • Kong, Y., Zhu, Y., Gao, C., She, W., Lin, W., Chen, Y., et al. (2014). Tissue-specific expression of small Auxin up RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis. Plant Cell Physiol. 54, 609-621. doi: 10.1093/pcp/pct028
    • (2014) Plant Cell Physiol , vol.54 , pp. 609-621
    • Kong, Y.1    Zhu, Y.2    Gao, C.3    She, W.4    Lin, W.5    Chen, Y.6
  • 30
    • 84878300025 scopus 로고    scopus 로고
    • Auxin biosynthesis and storage forms
    • Korasick, D. A., Enders, T. A., and Strader, L. C. (2013). Auxin biosynthesis and storage forms. J. Exp. Bot. 64, 2541-2555. doi: 10.1093/jxb/ert080
    • (2013) J. Exp. Bot , vol.64 , pp. 2541-2555
    • Korasick, D.A.1    Enders, T.A.2    Strader, L.C.3
  • 31
    • 45949087161 scopus 로고    scopus 로고
    • IbMADS1 (Ipomoea batatas MADS-box 1 gene) is involved in tuberous root initiation in sweet potato (Ipomoea batatas)
    • Ku, A. T., Huang, Y. S., Wang, Y. S., Ma, D., and Yeh, K. W. (2008). IbMADS1 (Ipomoea batatas MADS-box 1 gene) is involved in tuberous root initiation in sweet potato (Ipomoea batatas). Ann. Bot. 102, 57-67. doi: 10.1093/aob/mcn067
    • (2008) Ann. Bot , vol.102 , pp. 57-67
    • Ku, A.T.1    Huang, Y.S.2    Wang, Y.S.3    Ma, D.4    Yeh, K.W.5
  • 32
    • 84892184020 scopus 로고    scopus 로고
    • Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing
    • Lakhotia, N., Joshi, G., Bhardwaj, A. R., Katiyar Agarwal, S., Agarwal, M., Jagannath, A., et al. (2014). Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing. BMC Plant Biol. 14:6. doi: 10.1186/1471-2229-14-6
    • (2014) BMC Plant Biol , vol.14 , pp. 6
    • Lakhotia, N.1    Joshi, G.2    Bhardwaj, A.R.3    Katiyar Agarwal, S.4    Agarwal, M.5    Jagannath, A.6
  • 33
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: An improved ultrafast tool for short read alignment
    • Li, R., Yu, C., Li, Y., Lam, T. W., Yiu, S. M., Kristiansen, K., et al. (2009). SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25, 1966-1967. doi: 10.1093/bioinformatics/btp336
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5    Kristiansen, K.6
  • 34
    • 78650485784 scopus 로고    scopus 로고
    • Transcript profiling during the early development of the maize brace root via Solexa sequencing
    • Li, Y. J., Fu, Y. R., Huang, J. G., Wu, C. A., and Zheng, C. C. (2011). Transcript profiling during the early development of the maize brace root via Solexa sequencing. FEBS J. 278, 156-166. doi: 10.1111/j.1742-4658.2010.07941.x
    • (2011) FEBS J , vol.278 , pp. 156-166
    • Li, Y.J.1    Fu, Y.R.2    Huang, J.G.3    Wu, C.A.4    Zheng, C.C.5
  • 35
    • 84876144494 scopus 로고    scopus 로고
    • Transcript profiling of microRNAs during the early development of the maize brace root via Solexa sequencing
    • Liu, P., Yan, K., Lei, Y. X., Xu, R., Zhang, Y. M., Yang, G. D., et al. (2013). Transcript profiling of microRNAs during the early development of the maize brace root via Solexa sequencing. Genomics 101, 149-156. doi: 10.1016/j.ygeno.2012.11.004
    • (2013) Genomics , vol.101 , pp. 149-156
    • Liu, P.1    Yan, K.2    Lei, Y.X.3    Xu, R.4    Zhang, Y.M.5    Yang, G.D.6
  • 36
    • 84873743568 scopus 로고    scopus 로고
    • Auxin metabolism and homeostasis during plant development
    • Ljung, K. (2013). Auxin metabolism and homeostasis during plant development. Development 140, 943-950. doi: 10.1242/dev.086363
    • (2013) Development , vol.140 , pp. 943-950
    • Ljung, K.1
  • 38
    • 84875247710 scopus 로고    scopus 로고
    • Transcriptomics in the RNA-seq era
    • McGettigan, P. A. (2013). Transcriptomics in the RNA-seq era. Curr. Opin. Plant Biol. 17, 4-11. doi: 10.1016/j.cbpa.2012.12.008
    • (2013) Curr. Opin. Plant Biol , vol.17 , pp. 4-11
    • McGettigan, P.A.1
  • 39
    • 33645050152 scopus 로고    scopus 로고
    • The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence
    • Mitsuda, N., Seki, M., Shinozaki, K., and Ohme-Takagi, M. (2005). The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. Plant Cell 17, 2993-3006. doi: 10.1105/tpc.105.036004
    • (2005) Plant Cell , vol.17 , pp. 2993-3006
    • Mitsuda, N.1    Seki, M.2    Shinozaki, K.3    Ohme-Takagi, M.4
  • 40
    • 84931287981 scopus 로고    scopus 로고
    • The radish genome and comprehensive gene expression profile of tuberous root formation and development
    • Mitsui, Y., Shimomura, M., Komatsu, K., Namiki, N., Shibata-Hatta, M., Imai, M., et al. (2015). The radish genome and comprehensive gene expression profile of tuberous root formation and development. Sci. Rep. 5:10835. doi: 10.1038/srep10835
    • (2015) Sci. Rep , vol.5 , pp. 10835
    • Mitsui, Y.1    Shimomura, M.2    Komatsu, K.3    Namiki, N.4    Shibata-Hatta, M.5    Imai, M.6
  • 41
    • 16544369812 scopus 로고    scopus 로고
    • Transcription factor networks. Pathways to the knowledge of root development
    • Montiel, G., Gantet, P., Jay-Allemand, C., and Breton, C. (2004). Transcription factor networks. Pathways to the knowledge of root development. Plant Physiol. 136, 3478-3485. doi: 10.1104/pp.104.051029
    • (2004) Plant Physiol , vol.136 , pp. 3478-3485
    • Montiel, G.1    Gantet, P.2    Jay-Allemand, C.3    Breton, C.4
  • 42
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., and Wold, B. (2008). Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628. doi: 10.1038/nmeth.1226
    • (2008) Nat. Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 43
    • 78649527157 scopus 로고    scopus 로고
    • Arabidopsis vascular-related NAC- domain 6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation
    • Ohashi Ito, K., Oda, Y., and Fukuda, H. (2010). Arabidopsis vascular-related NAC- domain 6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation. Plant Cell 22, 3461-3473. doi: 10.1105/tpc.110.075036
    • (2010) Plant Cell , vol.22 , pp. 3461-3473
    • Ohashi Ito, K.1    Oda, Y.2    Fukuda, H.3
  • 45
    • 84896806236 scopus 로고    scopus 로고
    • Auxin binding protein1 links cell wall remodeling, Auxin signaling, and cell expansion in Arabidopsis
    • Paque, S., Mouille, G., Grandont, L., Alabadí, D., Gaertner, C., Goyallon, A., et al. (2014). Auxin binding protein1 links cell wall remodeling, Auxin signaling, and cell expansion in Arabidopsis. Plant Cell 26, 280-295. doi: 10.1105/tpc.113.120048
    • (2014) Plant Cell , vol.26 , pp. 280-295
    • Paque, S.1    Mouille, G.2    Grandont, L.3    Alabadí, D.4    Gaertner, C.5    Goyallon, A.6
  • 46
    • 84894066373 scopus 로고    scopus 로고
    • Profiling gene expression in germinating Brassica roots
    • Park, M. R., Wang, Y. H., and Hasenstein, K. H. (2014). Profiling gene expression in germinating Brassica roots. Plant Mol. Biol. Rep. 32, 541-548. doi: 10.1007/s11105-013-0668-y
    • (2014) Plant Mol. Biol. Rep , vol.32 , pp. 541-548
    • Park, M.R.1    Wang, Y.H.2    Hasenstein, K.H.3
  • 47
    • 84865369993 scopus 로고    scopus 로고
    • Control of Arabidopsis root development
    • Petricka, J. J., Winter, C. M., and Benfey, P. N. (2012). Control of Arabidopsis root development. Annu. Rev. Plant Biol. 63, 563. doi: 10.1146/annurev-arplant-042811-105501
    • (2012) Annu. Rev. Plant Biol , vol.63 , pp. 563
    • Petricka, J.J.1    Winter, C.M.2    Benfey, P.N.3
  • 48
    • 84908063362 scopus 로고    scopus 로고
    • Cell cycle entry, maintenance, and exit during plant development
    • Polyn, S., Willems, A., and De Veylder, L. (2015). Cell cycle entry, maintenance, and exit during plant development. Curr. Opin. Plant Biol. 23, 1-7. doi: 10.1016/j.pbi.2014.09.012
    • (2015) Curr. Opin. Plant Biol , vol.23 , pp. 1-7
    • Polyn, S.1    Willems, A.2    De Veylder, L.3
  • 49
    • 84881055551 scopus 로고    scopus 로고
    • The tissue-specific and developmentally regulated expression patterns of the SAUR41 subfamily of Small Auxin up RNA genes: Potential implications
    • Qiu, T., Chen, Y., Li, M., Kong, Y., Zhu, Y., Han, N., et al. (2013). The tissue-specific and developmentally regulated expression patterns of the SAUR41 subfamily of Small Auxin up RNA genes: potential implications. Plant Signal. Behav. 8:e25283. doi: 10.4161/psb.25283
    • (2013) Plant Signal. Behav , vol.8
    • Qiu, T.1    Chen, Y.2    Li, M.3    Kong, Y.4    Zhu, Y.5    Han, N.6
  • 50
    • 79954425266 scopus 로고    scopus 로고
    • Role of ethylene and jasmonic acid on rhizome induction and growth in rhubarb (Rheum rhabarbarum L.)
    • Rayirath, U. P., Lada, R. R., Caldwell, C. D., Asiedu, S. K., and Sibley, K. J. (2011). Role of ethylene and jasmonic acid on rhizome induction and growth in rhubarb (Rheum rhabarbarum L.). Plant Cell Tissue Organ Cult. 105, 253-263. doi: 10.1007/s11240-010-9861-y
    • (2011) Plant Cell Tissue Organ Cult , vol.105 , pp. 253-263
    • Rayirath, U.P.1    Lada, R.R.2    Caldwell, C.D.3    Asiedu, S.K.4    Sibley, K.J.5
  • 51
    • 84872131575 scopus 로고    scopus 로고
    • Research progresses on the key enzymes involved in sucrose metabolism in maize
    • Ren, X., and Zhang, J. (2013). Research progresses on the key enzymes involved in sucrose metabolism in maize. Carbohyd. Res. 368, 29-34. doi: 10.1016/j.phytochem.2010.07.007
    • (2013) Carbohyd. Res , vol.368 , pp. 29-34
    • Ren, X.1    Zhang, J.2
  • 52
    • 0033828167 scopus 로고    scopus 로고
    • A genomic perspective on plant transcription factors
    • Riechmann, J. L., and Ratcliffe, O. J. (2000). A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3, 423-434. doi: 10.1016/S1369-5266(00)00107-2
    • (2000) Curr. Opin. Plant Biol , vol.3 , pp. 423-434
    • Riechmann, J.L.1    Ratcliffe, O.J.2
  • 53
    • 0034953548 scopus 로고    scopus 로고
    • Spatial and temporal distribution of sucrose synthase in the radish hypocotyl in relation to thickening growth
    • Rouhier, H., and Usuda, H. (2001). Spatial and temporal distribution of sucrose synthase in the radish hypocotyl in relation to thickening growth. Plant Cell Physiol. 42, 583-593. doi: 10.1093/pcp/pce071
    • (2001) Plant Cell Physiol , vol.42 , pp. 583-593
    • Rouhier, H.1    Usuda, H.2
  • 54
    • 84899718242 scopus 로고    scopus 로고
    • Sucrose metabolism: Gateway to diverse carbon use and sugar signaling
    • Ruan, Y. L. (2014). Sucrose metabolism: gateway to diverse carbon use and sugar signaling. Ann. Rev. Plant Biol. 65, 33-67. doi: 10.1146/annurev-arplant-050213-040251
    • (2014) Ann. Rev. Plant Biol , vol.65 , pp. 33-67
    • Ruan, Y.L.1
  • 55
    • 0032498232 scopus 로고    scopus 로고
    • A homolog of no apical meristem is an immediate target of the floral homeotic genes APETALA3/PISTILLATA
    • Sablowski, R. W., and Meyerowitz, E. M. (1998). A homolog of no apical meristem is an immediate target of the floral homeotic genes APETALA3/PISTILLATA. Cell 92, 93-103. doi: 10.1016/S0092-8674(00)80902-2
    • (1998) Cell , vol.92 , pp. 93-103
    • Sablowski, R.W.1    Meyerowitz, E.M.2
  • 56
    • 33644778739 scopus 로고    scopus 로고
    • Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development
    • Stupar, R. M., Beaubien, K. A., Jin, W., Song, J., Lee, M. K., Wu, C., et al. (2006). Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development. Genetics 172, 1263-1275. doi: 10.1534/genetics.105.051219
    • (2006) Genetics , vol.172 , pp. 1263-1275
    • Stupar, R.M.1    Beaubien, K.A.2    Jin, W.3    Song, J.4    Lee, M.K.5    Wu, C.6
  • 57
    • 84874128611 scopus 로고    scopus 로고
    • Overexpression of an extraplastidic β-amylase which accumulates in the radish taproot influences the starch content of Arabidopsis thaliana
    • Takahashi, I., Kuboi, T., Fujiwara, T., and Hara, M. (2012). Overexpression of an extraplastidic β-amylase which accumulates in the radish taproot influences the starch content of Arabidopsis thaliana. Plant Biotechnol. 29, 447-455. doi: 10.5511/plantbiotechnology.12.1002a
    • (2012) Plant Biotechnol , vol.29 , pp. 447-455
    • Takahashi, I.1    Kuboi, T.2    Fujiwara, T.3    Hara, M.4
  • 58
    • 1342311981 scopus 로고    scopus 로고
    • Ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation
    • Takase, T., Nakazawa, M., Ishikawa, A., Kawashima, M., Ichikawa, T., Takahashi, N., et al. (2004). ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation. Plant J. 37, 471-483. doi: 10.1046/j.1365-313X.2003.01973.x
    • (2004) Plant J , vol.37 , pp. 471-483
    • Takase, T.1    Nakazawa, M.2    Ishikawa, A.3    Kawashima, M.4    Ichikawa, T.5    Takahashi, N.6
  • 59
    • 12544249509 scopus 로고    scopus 로고
    • Analysis of genes developmentally regulated during storage root formation of sweet potato
    • Tanaka, M., Takahata, Y., and Nakatani, M. (2005). Analysis of genes developmentally regulated during storage root formation of sweet potato. J. Plant Physiol. 162, 91-102. doi: 10.1016/j.jplph.2004.06.003
    • (2005) J. Plant Physiol , vol.162 , pp. 91-102
    • Tanaka, M.1    Takahata, Y.2    Nakatani, M.3
  • 60
    • 84901029240 scopus 로고    scopus 로고
    • Regulation of root hair cell differentiation by R3 MYB transcription factors in tomato and Arabidopsis
    • Tominaga Wada, R., and Wada, T. (2014). Regulation of root hair cell differentiation by R3 MYB transcription factors in tomato and Arabidopsis. Front. Plant Sci. 5:91. doi: 10.3389/fpls.2014.00091
    • (2014) Front. Plant Sci , vol.5 , pp. 91
    • Tominaga Wada, R.1    Wada, T.2
  • 61
    • 42049102012 scopus 로고    scopus 로고
    • Mapping of QTLs controlling root shape and red pigmentation in radish, Raphanus sativus L
    • Tsuro, M., Suwabe, K., Kubo, N., Matsumoto, S., and Hirai, M. (2008). Mapping of QTLs controlling root shape and red pigmentation in radish, Raphanus sativus L. Breed. Sci. 58, 55-61. doi: 10.1270/jsbbs.58.55
    • (2008) Breed. Sci , vol.58 , pp. 55-61
    • Tsuro, M.1    Suwabe, K.2    Kubo, N.3    Matsumoto, S.4    Hirai, M.5
  • 62
    • 85027940268 scopus 로고    scopus 로고
    • Genetic and hormonal regulation of cambial development
    • Ursache, R., Nieminen, K., and Helariutta, Y. (2013). Genetic and hormonal regulation of cambial development. Physiol. Plant 147, 36-45. doi: 10.1111/j.1399-3054.2012.01627.x
    • (2013) Physiol. Plant , vol.147 , pp. 36-45
    • Ursache, R.1    Nieminen, K.2    Helariutta, Y.3
  • 63
    • 0032926830 scopus 로고    scopus 로고
    • Development of sink capacity of the "storage root" in a radish cultivar with a high ratio of "storage root" to shoot
    • Usuda, H., Demura, T., Shimogawara, K., and Fukuda, H. (1999). Development of sink capacity of the "storage root" in a radish cultivar with a high ratio of "storage root" to shoot. Plant Cell Physiol. 40, 369-377. doi: 10.1093/oxfordjournals.pcp.a029552
    • (1999) Plant Cell Physiol , vol.40 , pp. 369-377
    • Usuda, H.1    Demura, T.2    Shimogawara, K.3    Fukuda, H.4
  • 64
    • 36448964900 scopus 로고    scopus 로고
    • Xyloglucan endotransglucosylase activity loosens a plant cell wall
    • Van Sandt, V. S., Suslov, D., Verbelen, J. P., and Vissenberg, K. (2007). Xyloglucan endotransglucosylase activity loosens a plant cell wall. Ann. Bot. 100, 1467-1473. doi: 10.1093/aob/mcm248
    • (2007) Ann. Bot , vol.100 , pp. 1467-1473
    • Van Sandt, V.S.1    Suslov, D.2    Verbelen, J.P.3    Vissenberg, K.4
  • 65
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: An R package for identifying differentially expressed genes from RNA-seq data
    • Wang, L., Feng, Z., Wang, X., Wang, X., and Zhang, X. (2010). DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26, 136-138. doi: 10.1093/bioinformatics/btp612
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Wang, X.4    Zhang, X.5
  • 66
    • 84864372943 scopus 로고    scopus 로고
    • Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish
    • Wang, S., Wang, X., He, Q., Liu, X., Xu, W., Li, L., et al. (2012). Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep. 31, 1437-1447. doi: 10.1007/s00299-012-1259-3
    • (2012) Plant Cell Rep , vol.31 , pp. 1437-1447
    • Wang, S.1    Wang, X.2    He, Q.3    Liu, X.4    Xu, W.5    Li, L.6
  • 67
    • 84888251195 scopus 로고    scopus 로고
    • De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism
    • Wang, Y., Pan, Y., Liu, Z., Zhu, X., Zhai, L., Xu, L., et al. (2013a). De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism. BMC Genomics 14:836. doi: 10.1186/1471-2164-14-836
    • (2013) BMC Genomics , vol.14 , pp. 836
    • Wang, Y.1    Pan, Y.2    Liu, Z.3    Zhu, X.4    Zhai, L.5    Xu, L.6
  • 68
    • 84879261150 scopus 로고    scopus 로고
    • Transcriptome profiling of radish (Raphanus sativus L.) root and identification
    • Wang, Y., Xu, L., Chen, Y., Shen, H., Gong, Y., Limera, C., et al. (2013b). Transcriptome profiling of radish (Raphanus sativus L.) root and identification < of genes involved in response to lead (Pb) stress with next generation sequencing. PLoS ONE 8:e66539. doi: 10.1371/journal.pone.0066539
    • (2013) Plos ONE , vol.8
    • Wang, Y.1    Xu, L.2    Chen, Y.3    Shen, H.4    Gong, Y.5    Limera, C.6
  • 69
    • 84884935756 scopus 로고    scopus 로고
    • The effects of calcium on the in vitro Cassava storage root formation
    • Yao, Y., Min, Y., Geng, M. T., Wu, X. H., Hu, X. W., Fu, S. P., et al. (2013). The effects of calcium on the in vitro Cassava storage root formation. Adv. Mater. Res. 726, 4529-4533. doi: 10.4028/www.scientific.net/AMR.726-731.4529
    • (2013) Adv. Mater. Res , vol.726 , pp. 4529-4533
    • Yao, Y.1    Min, Y.2    Geng, M.T.3    Wu, X.H.4    Hu, X.W.5    Fu, S.P.6
  • 70
    • 33747846582 scopus 로고    scopus 로고
    • WEGO: A web tool for plotting GO annotations
    • Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., et al. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 34, W293-W297. doi: 10.1093/nar/gkl031
    • (2006) Nucleic Acids Res , vol.34 , pp. W293-W297
    • Ye, J.1    Fang, L.2    Zheng, H.3    Zhang, Y.4    Chen, J.5    Zhang, Z.6
  • 71
    • 0037432138 scopus 로고    scopus 로고
    • Identification of genes possibly related to storage root induction in sweetpotato
    • You, M. K., Hur, C. G., Ahn, Y. S., Suh, M. C., Jeong, B. C., Shin, J. S., et al. (2003). Identification of genes possibly related to storage root induction in sweetpotato. FEBS Lett. 536, 101-105. doi: 10.1016/S0014-5793(03)00035-8
    • (2003) FEBS Lett , vol.536 , pp. 101-105
    • You, M.K.1    Hur, C.G.2    Ahn, Y.S.3    Suh, M.C.4    Jeong, B.C.5    Shin, J.S.6
  • 72
    • 84924066327 scopus 로고    scopus 로고
    • Transcriptome profiling of root microRNAs reveals novel insights into taproot thickening in radish (Raphanus sativus L.)
    • Yu, R., Wang, Y., Xu, L., Zhu, X., Zhang, W., Wang, R., et al. (2015). Transcriptome profiling of root microRNAs reveals novel insights into taproot thickening in radish (Raphanus sativus L.). BMC Plant Biol. 15:30. doi: 10.1186/s12870-015-0427-3
    • (2015) BMC Plant Biol , vol.15 , pp. 30
    • Yu, R.1    Wang, Y.2    Xu, L.3    Zhu, X.4    Zhang, W.5    Wang, R.6
  • 73
    • 84969524435 scopus 로고    scopus 로고
    • De novo taproot Transcriptome sequencing and analysis the major gene involved in sucrose metabolism in radish (Raphanus sativus L.)
    • Yu, R., Xu, L., Zhang, W., Wang, Y., Luo, X., Wang, R., et al. (2016). De novo taproot Transcriptome sequencing and analysis the major gene involved in sucrose metabolism in radish (Raphanus sativus L.). Front. Plant Sci. 7:585. doi: 10.3389/fpls.2016.00585
    • (2016) Front. Plant Sci , vol.7 , pp. 585
    • Yu, R.1    Xu, L.2    Zhang, W.3    Wang, Y.4    Luo, X.5    Wang, R.6
  • 74
    • 84890119833 scopus 로고    scopus 로고
    • The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation
    • Zhang, N., Zhang, H. J., Zhao, B., Sun, Q. Q., Cao, Y. Y., Li, R., et al. (2014a). The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation. J. Pineal Res. 56, 39-50. doi: 10.1111/jpi.12095
    • (2014) J. Pineal Res , vol.56 , pp. 39-50
    • Zhang, N.1    Zhang, H.J.2    Zhao, B.3    Sun, Q.Q.4    Cao, Y.Y.5    Li, R.6
  • 75
    • 84907416457 scopus 로고    scopus 로고
    • The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots
    • Zhang, Y., Paschold, A., Marcon, C., Liu, S., Tai, H., Nestler, J., et al. (2014b). The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. J. Exp. Bot. 65, 4919-4930. doi: 10.1093/jxb/eru249
    • (2014) J. Exp. Bot , vol.65 , pp. 4919-4930
    • Zhang, Y.1    Paschold, A.2    Marcon, C.3    Liu, S.4    Tai, H.5    Nestler, J.6
  • 76
    • 84919881177 scopus 로고    scopus 로고
    • Analysis of global gene expression profiles to identify differentially expressed genes critical for embryo development in Brassica rapa
    • Zhang, Y., Peng, L., Wu, Y., Shen, Y., Wu, X., and Wang, J. (2014c). Analysis of global gene expression profiles to identify differentially expressed genes critical for embryo development in Brassica rapa. Plant Mol. Biol. 86, 425-442. doi: 10.1007/s11103-014-0238-1
    • (2014) Plant Mol. Biol , vol.86 , pp. 425-442
    • Zhang, Y.1    Peng, L.2    Wu, Y.3    Shen, Y.4    Wu, X.5    Wang, J.6
  • 77
    • 26944468704 scopus 로고    scopus 로고
    • The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl
    • Zhao, C., Craig, J. C., Petzold, H. E., Dickerman, A. W., and Beers, E. P. (2005). The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl. Plant Physiol. 138, 803-818. doi: 10.1104/pp.105.060202
    • (2005) Plant Physiol , vol.138 , pp. 803-818
    • Zhao, C.1    Craig, J.C.2    Petzold, H.E.3    Dickerman, A.W.4    Beers, E.P.5
  • 78
    • 84922208175 scopus 로고    scopus 로고
    • Sulfur nutrient availability regulates root elongation by affecting root IAA levels and the stem cell niche
    • Zhao, Q., Wu, Y., Gao, L., Ma, J., Li, C. Y., and Xiang, C. B. (2014). Sulfur nutrient availability regulates root elongation by affecting root IAA levels and the stem cell niche. J. Integr. Plant Biol. 56, 1151-1163. doi: 10.1111/jipb.12217
    • (2014) J. Integr. Plant Biol , vol.56 , pp. 1151-1163
    • Zhao, Q.1    Wu, Y.2    Gao, L.3    Ma, J.4    Li, C.Y.5    Xiang, C.B.6
  • 79
    • 80054685612 scopus 로고    scopus 로고
    • Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors
    • Zhong, R., Lee, C., McCarthy, R. L., Reeves, C. K., Jones, E. G., and Ye, Z. H. (2011). Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors. Plant Cell Physiol. 52, 1856-1871. doi: 10.1093/pcp/pcr123
    • (2011) Plant Cell Physiol , vol.52 , pp. 1856-1871
    • Zhong, R.1    Lee, C.2    McCarthy, R.L.3    Reeves, C.K.4    Jones, E.G.5    Ye, Z.H.6
  • 80
    • 35748936175 scopus 로고    scopus 로고
    • The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis
    • Zhong, R., Richardson, E. A., and Ye, Z. H. (2007). The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. Plant Cell 19, 2776-2792. doi: 10.1105/tpc.107.053678
    • (2007) Plant Cell , vol.19 , pp. 2776-2792
    • Zhong, R.1    Richardson, E.A.2    Ye, Z.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.