메뉴 건너뛰기




Volumn 7, Issue MAY2016, 2016, Pages

De novo taproot transcriptome sequencing and analysis of major genes involved in sucrose metabolism in radish (Raphanus sativus L.)

Author keywords

Raphanus sativus; RNA seq; Sucrose metabolism; Taproot; Transcriptome

Indexed keywords


EID: 84969524435     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2016.00585     Document Type: Article
Times cited : (37)

References (37)
  • 1
    • 79959264079 scopus 로고    scopus 로고
    • De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques
    • Angeloni, F., Wagemaker, C. A., Jetten, M. S., Op den Camp, H. J., Janssen megens, E. M., Francoijs, K. J., et al. (2011). De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques. Mol. Ecol. Resour. 11, 662-674. doi: 10.1111/j.1755-0998.2011.02990.x
    • (2011) Mol. Ecol. Resour , vol.11 , pp. 662-674
    • Angeloni, F.1    Wagemaker, C.A.2    Jetten, M.S.3    Op den Camp, H.J.4    Janssen megens, E.M.5    Francoijs, K.J.6
  • 2
    • 0035200891 scopus 로고    scopus 로고
    • Sucrose phosphate synthase activity rises in correlation with high-rate cellulose synthesis in three heterotrophic systems
    • Babb, V. M., and Haigler, C. H. (2001). Sucrose phosphate synthase activity rises in correlation with high-rate cellulose synthesis in three heterotrophic systems. Plant Physiol. 127, 1234-1242. doi: 10.1104/pp.010424
    • (2001) Plant Physiol , vol.127 , pp. 1234-1242
    • Babb, V.M.1    Haigler, C.H.2
  • 3
    • 39749107291 scopus 로고    scopus 로고
    • Inhibitory response of Raphanus sativus on lipid peroxidation in albino rats
    • Chaturvedi, P. (2008). Inhibitory response of Raphanus sativus on lipid peroxidation in albino rats. Evid. Based Complement. Alternat. Med. 5, 55-59. doi: 10.1093/ecam/nel077
    • (2008) Evid. Based Complement. Alternat. Med , vol.5 , pp. 55-59
    • Chaturvedi, P.1
  • 4
    • 0032910988 scopus 로고    scopus 로고
    • Genetic evidence that invertase-mediated release of hexoses is critical for appropriate carbon partitioning and normal seed development in maize
    • Cheng, W. H., and Chourey, P. S. (1999). Genetic evidence that invertase-mediated release of hexoses is critical for appropriate carbon partitioning and normal seed development in maize. Theor. Appl. Genet. 98, 485-495. doi: 10.1007/s001220051096
    • (1999) Theor. Appl. Genet , vol.98 , pp. 485-495
    • Cheng, W.H.1    Chourey, P.S.2
  • 5
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A., Götz, S., García Gómez, J. M., Terol, J., Talón, M., and Robles, M. (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676. doi: 10.1093/bioinformatics/bti610
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 6
    • 0041732170 scopus 로고    scopus 로고
    • The noble radish: Past, present and future
    • Curtis, I. S. (2003). The noble radish: past, present and future. Trends Plant Sci. 8, 305-307. doi: 10.1016/S1360-1385(03)00127-4
    • (2003) Trends Plant Sci , vol.8 , pp. 305-307
    • Curtis, I.S.1
  • 7
    • 0034658655 scopus 로고    scopus 로고
    • Sucrose and the integration of metabolism in vascular plants
    • Farrar, J., Pollock, C., and Gallagher, J. (2000). Sucrose and the integration of metabolism in vascular plants. Plant Sci. 154, 1-11. doi: 10.1016/S0168-9452(99)00260-5
    • (2000) Plant Sci , vol.154 , pp. 1-11
    • Farrar, J.1    Pollock, C.2    Gallagher, J.3
  • 8
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., et al. (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652. doi: 10.1038/nbt.1883
    • (2011) Nat. Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5    Amit, I.6
  • 9
    • 28744448083 scopus 로고    scopus 로고
    • Raphanus sativus (Radish): Their chemistry and biology
    • Gutiérrez, R. M., and Perez, R. L. (2004). Raphanus sativus (Radish): their chemistry and biology. Scientific World Journal 4, 811-837. doi: 10.1100/tsw.2004.131
    • (2004) Scientific World Journal , vol.4 , pp. 811-837
    • Gutiérrez, R.M.1    Perez, R.L.2
  • 10
    • 84862000006 scopus 로고    scopus 로고
    • De novotranscriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis
    • Hyun, T. K., Rim, Y., Jang, H. J., Kim, C. H., Park, J., Kumar, R., et al. (2012). De novotranscriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. Plant Mol. Biol. 79, 413-427. doi: 10.1007/s11103-012-9919-9
    • (2012) Plant Mol. Biol , vol.79 , pp. 413-427
    • Hyun, T.K.1    Rim, Y.2    Jang, H.J.3    Kim, C.H.4    Park, J.5    Kumar, R.6
  • 11
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli, C., Jongeneel, C. V., and Bucher, P. (1999). ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 138-148.
    • (1999) Proc. Int. Conf. Intell. Syst. Mol. Biol , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 13
    • 84922020423 scopus 로고    scopus 로고
    • Draft sequences of the radish (Raphanus sativus L.) genome
    • Kitashiba, H., Li, F., Hirakawa, H., Kawanabe, T., Zou, Z., Hasegawa, Y., et al. (2014). Draft sequences of the radish (Raphanus sativus L.) genome. DNA Res. 21, 481-490. doi: 10.1093/dnares/dsu014
    • (2014) DNA Res , vol.21 , pp. 481-490
    • Kitashiba, H.1    Li, F.2    Hirakawa, H.3    Kawanabe, T.4    Zou, Z.5    Hasegawa, Y.6
  • 14
    • 0038642261 scopus 로고    scopus 로고
    • Gene expression activity and pathway selection for sucrose metabolism in developing storage root of sweet potato
    • Li, X. Q., and Zhang, D. (2003). Gene expression activity and pathway selection for sucrose metabolism in developing storage root of sweet potato. Plant Cell Physiol. 44, 630-636. doi: 10.1093/pcp/pcg080
    • (2003) Plant Cell Physiol , vol.44 , pp. 630-636
    • Li, X.Q.1    Zhang, D.2
  • 15
    • 84872131575 scopus 로고    scopus 로고
    • Research progresses on the key enzymes involved in sucrose metabolism in maize
    • Ren, X., and Zhang, J. (2013). Research progresses on the key enzymes involved in sucrose metabolism in maize. Carbohydr. Res. 368, 29-34. doi: 10.1016/j.carres.2012.10.016
    • (2013) Carbohydr. Res , vol.368 , pp. 29-34
    • Ren, X.1    Zhang, J.2
  • 16
    • 0034953548 scopus 로고    scopus 로고
    • Spatial and temporal distribution of sucrose synthase in the radish hypocotyl in relation to thickening growth
    • Rouhier, H., and Usuda, H. (2001). Spatial and temporal distribution of sucrose synthase in the radish hypocotyl in relation to thickening growth. Plant Cell Physiol.42, 583-593. doi: 10.1093/pcp/pce071
    • (2001) Plant Cell Physiol , vol.42 , pp. 583-593
    • Rouhier, H.1    Usuda, H.2
  • 17
    • 84866415109 scopus 로고    scopus 로고
    • Signaling role of sucrose metabolism in development
    • Ruan, Y. L. (2012). Signaling role of sucrose metabolism in development. Mol. Plant 5, 763-765. doi: 10.1093/mp/sss046
    • (2012) Mol. Plant , vol.5 , pp. 763-765
    • Ruan, Y.L.1
  • 18
    • 84899718242 scopus 로고    scopus 로고
    • Sucrose metabolism: Gateway to diverse carbon use and sugar signaling
    • Ruan, Y. L. (2014). Sucrose metabolism: gateway to diverse carbon use and sugar signaling. Annu. Rev. Plant Biol. 65, 33-67. doi: 10.1146/annurev-arplant-050213-040251
    • (2014) Annu. Rev. Plant Biol , vol.65 , pp. 33-67
    • Ruan, Y.L.1
  • 19
    • 84879705405 scopus 로고    scopus 로고
    • Interplay between sucrose and folate modulates auxin signaling in Arabidopsis
    • Stokes, M. E., Chattopadhyay, A., Wilkins, O., Nambara, E., and Campbell, M. M. (2013). Interplay between sucrose and folate modulates auxin signaling in Arabidopsis. Plant Physiol. 162, 1552-1565. doi: 10.1104/pp.113.215095
    • (2013) Plant Physiol , vol.162 , pp. 1552-1565
    • Stokes, M.E.1    Chattopadhyay, A.2    Wilkins, O.3    Nambara, E.4    Campbell, M.M.5
  • 21
    • 0032926830 scopus 로고    scopus 로고
    • Development of sink capacity of the "storage root" in a radish cultivar with a high ratio of "storage root" to shoot
    • Usuda, H., Demura, T., Shimogawara, K., and Fukuda, H. (1999). Development of sink capacity of the "storage root" in a radish cultivar with a high ratio of "storage root" to shoot. Plant Cell Physiol. 40, 369-377. doi: 10.1093/oxfordjournals.pcp.a029552
    • (1999) Plant Cell Physiol , vol.40 , pp. 369-377
    • Usuda, H.1    Demura, T.2    Shimogawara, K.3    Fukuda, H.4
  • 22
    • 0000785628 scopus 로고
    • Sucrose synthase, starch accumulation, and tomato fruit sink strength
    • Wang, F., Sanz, A., Brenner, M. L., and Smith, A. (1993). Sucrose synthase, starch accumulation, and tomato fruit sink strength. Plant Physiol. 101, 321-327.
    • (1993) Plant Physiol , vol.101 , pp. 321-327
    • Wang, F.1    Sanz, A.2    Brenner, M.L.3    Smith, A.4
  • 23
    • 34347379550 scopus 로고    scopus 로고
    • Beijing: Scientific and Technical Documents Publishing House
    • Wang, L., and He, Q. (2005). Chinese Radish. Beijing: Scientific and Technical Documents Publishing House.
    • (2005) Chinese Radish
    • Wang, L.1    He, Q.2
  • 24
    • 84864372943 scopus 로고    scopus 로고
    • Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish
    • Wang, S., Wang, X., He, Q., Liu, X., Xu, W., Li, L., et al. (2012). Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep. 31, 1437-1447. doi: 10.1007/s00299-012-1259-3
    • (2012) Plant Cell Rep , vol.31 , pp. 1437-1447
    • Wang, S.1    Wang, X.2    He, Q.3    Liu, X.4    Xu, W.5    Li, L.6
  • 25
    • 80052208252 scopus 로고    scopus 로고
    • Changes of sugar content and sucrose metabolizing enzyme activities during fleshy taproot development in radish (Raphanus sativus L.)
    • Wang, W., Gong, Y., Liu, L., Wang, Y., Jing, Z., Huang, D., et al. (2007). Changes of sugar content and sucrose metabolizing enzyme activities during fleshy taproot development in radish (Raphanus sativus L.). Acta Hortic. Sin. 34, 1313-1316. doi: 10.3321/j.issn:0513-353x.2007.05.043
    • (2007) Acta Hortic. Sin , vol.34 , pp. 1313-1316
    • Wang, W.1    Gong, Y.2    Liu, L.3    Wang, Y.4    Jing, Z.5    Huang, D.6
  • 26
    • 84888251195 scopus 로고    scopus 로고
    • De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism
    • Wang, Y., Pan, Y., Liu, Z., Zhu, X., Zhai, L., Xu, L., et al. (2013). De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism. BMC Genomics 14:836. doi: 10.1186/1471-2164-14-836
    • (2013) BMC Genomics , vol.14 , pp. 836
    • Wang, Y.1    Pan, Y.2    Liu, Z.3    Zhu, X.4    Zhai, L.5    Xu, L.6
  • 27
    • 78650502725 scopus 로고    scopus 로고
    • De novoassembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
    • Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., et al. (2010). De novoassembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas).BMC Genomics 11:726. doi: 10.1186/1471-2164-11-726
    • (2010) BMC Genomics , vol.11 , pp. 726
    • Wang, Z.1    Fang, B.2    Chen, J.3    Zhang, X.4    Luo, Z.5    Huang, L.6
  • 28
    • 84858593713 scopus 로고    scopus 로고
    • Strategies for transcriptome analysis in nonmodel plants
    • Ward, J. A., Ponnala, L., and Weber, C. A. (2012). Strategies for transcriptome analysis in nonmodel plants. Am. J. Bot. 99, 267-276. doi: 10.3732/ajb.1100334
    • (2012) Am. J. Bot , vol.99 , pp. 267-276
    • Ward, J.A.1    Ponnala, L.2    Weber, C.A.3
  • 29
    • 0031000565 scopus 로고    scopus 로고
    • Sugar import and metabolism during seed development
    • Weber, H., Borisjuk, L., and Wobus, U. (1997). Sugar import and metabolism during seed development. Trends Plant Sci. 2, 169-174. doi: 10.1016/S1360-1385(97)85222-3
    • (1997) Trends Plant Sci , vol.2 , pp. 169-174
    • Weber, H.1    Borisjuk, L.2    Wobus, U.3
  • 30
    • 80053316627 scopus 로고    scopus 로고
    • De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients
    • Wenping, H., Yuan, Z., Jie, S., Lijun, Z., and Zhezhi, W. (2011). De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients. Genomics 98, 272-279. doi: 10.1016/j.ygeno.2011.03.012
    • (2011) Genomics , vol.98 , pp. 272-279
    • Wenping, H.1    Yuan, Z.2    Jie, S.3    Lijun, Z.4    Zhezhi, W.5
  • 31
    • 84928125354 scopus 로고    scopus 로고
    • Sequencing, de novoassembly and comparative analysis of Raphanus sativus transcriptome
    • Wu, G., Zhang, L., Yin, Y., Wu, J., Yu, L., Zhou, Y., et al. (2015). Sequencing, de novoassembly and comparative analysis of Raphanus sativus transcriptome. Front. Plant Sci. 6:198. doi: 10.3389/fpls.2015.00198
    • (2015) Front. Plant Sci , vol.6 , pp. 198
    • Wu, G.1    Zhang, L.2    Yin, Y.3    Wu, J.4    Yu, L.5    Zhou, Y.6
  • 32
    • 84876287130 scopus 로고    scopus 로고
    • Glucose-TOR signalling reprograms the transcriptome and activates meristems
    • Xiong, Y., McCormack, M., Li, L., Hall, Q., Xiang, C., and Sheen, J. (2013). Glucose-TOR signalling reprograms the transcriptome and activates meristems. Nature 496, 181-186. doi: 10.1038/nature12030
    • (2013) Nature , vol.496 , pp. 181-186
    • Xiong, Y.1    McCormack, M.2    Li, L.3    Hall, Q.4    Xiang, C.5    Sheen, J.6
  • 33
    • 84864768408 scopus 로고    scopus 로고
    • Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR
    • Xu, Y., Zhu, X., Gong, Y., Xu, L., Wang, Y., Liu, L., et al. (2012). Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR. Biochem. Biophys. Res. Commun. 3, 398-403. doi: 10.1016/j.bbrc.2012.06.119
    • (2012) Biochem. Biophys. Res. Commun , vol.3 , pp. 398-403
    • Xu, Y.1    Zhu, X.2    Gong, Y.3    Xu, L.4    Wang, Y.5    Liu, L.6
  • 34
    • 84879062749 scopus 로고    scopus 로고
    • Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C
    • Yang, L., Xu, M., Koo, Y., He, J., and Poethig, R. S. (2013). Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C. Elife 2:e00260. doi: 10.7554/eLife.00260
    • (2013) Elife , vol.2
    • Yang, L.1    Xu, M.2    Koo, Y.3    He, J.4    Poethig, R.S.5
  • 35
    • 33747846582 scopus 로고    scopus 로고
    • WEGO: A web tool for plotting GO annotations
    • Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., et al. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 34, W293-W297. doi: 10.1093/nar/gkl031
    • (2006) Nucleic Acids Res , vol.34 , pp. W293-W297
    • Ye, J.1    Fang, L.2    Zheng, H.3    Zhang, Y.4    Chen, J.5    Zhang, Z.6
  • 36
    • 84893047898 scopus 로고    scopus 로고
    • Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing
    • Zhang, L., Jia, H., Yin, Y., Wu, G., Xia, H., Wang, X., et al. (2013). Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing. PLoS ONE 8:e80350. doi: 10.1371/journal.pone.0080350
    • (2013) PLoS ONE , vol.8
    • Zhang, L.1    Jia, H.2    Yin, Y.3    Wu, G.4    Xia, H.5    Wang, X.6
  • 37
    • 84921888726 scopus 로고    scopus 로고
    • Transcriptomic identification and expression of starch and sucrose metabolism genes in the seeds of Chinese Chestnut (Castanea mollissima)
    • Zhang, L., Lin, Q., Feng, Y., Fan, X., Zou, F., Yuan, D. Y., et al. (2015). Transcriptomic identification and expression of starch and sucrose metabolism genes in the seeds of Chinese Chestnut (Castanea mollissima). J. Agric. Food Chem. 63, 929-942. doi: 10.1021/jf505247d
    • (2015) J. Agric. Food Chem , vol.63 , pp. 929-942
    • Zhang, L.1    Lin, Q.2    Feng, Y.3    Fan, X.4    Zou, F.5    Yuan, D.Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.