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Volumn 5, Issue , 2015, Pages

The radish genome and comprehensive gene expression profile of tuberous root formation and development

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTER ANALYSIS; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; PLANT GENOME; PLANT ROOT; RAPHANUS;

EID: 84931287981     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep10835     Document Type: Article
Times cited : (144)

References (79)
  • 1
    • 0005720232 scopus 로고
    • Radish, Raphanus sativus (Cruciferae)
    • eds Simmonds N. W. Longman
    • Banga, O. Radish, Raphanus sativus (Cruciferae). in Evolution of crop plants. (eds Simmonds N. W.) 60-62 (Longman, 1976).
    • (1976) Evolution of Crop Plants. , pp. 60-62
    • Banga, O.1
  • 2
    • 33751014556 scopus 로고    scopus 로고
    • The ABC's of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes
    • Schranz, M. E., Lysak, M. A. & Mitchell-Olds, T. The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci 11, 535-542 (2006).
    • (2006) Trends Plant Sci , vol.11 , pp. 535-542
    • Schranz, M.E.1    Lysak, M.A.2    Mitchell-Olds, T.3
  • 3
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • Wang, X. et al. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet 43, 1035-1039 (2011).
    • (2011) Nat Genet , vol.43 , pp. 1035-1039
    • Wang, X.1
  • 4
    • 0030454609 scopus 로고    scopus 로고
    • Comparative genome mapping in Brassica
    • Lagercrantz, U. & Lydiate, D. J. Comparative genome mapping in Brassica. Genetics 144, 1903-1910 (1996).
    • (1996) Genetics , vol.144 , pp. 1903-1910
    • Lagercrantz, U.1    Lydiate, D.J.2
  • 5
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • Lagercrantz, U. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150, 1217-1228 (1998).
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 6
    • 0006114786 scopus 로고
    • Synthesis of 4-methylthio-3-butenyl isothiocyanate, the pungent principle of radish root
    • Brandsma, L., Vermeer, P., Kooijman, J. G. A., Boelens, H. & Maessen, J. T. M. Synthesis of 4-methylthio-3-butenyl isothiocyanate, the pungent principle of radish root. Recl Trav Chim Pay-B 91, 729-732 (1972).
    • (1972) Recl Trav Chim Pay-B , vol.91 , pp. 729-732
    • Brandsma, L.1    Vermeer, P.2    Kooijman, J.G.A.3    Boelens, H.4    Maessen, J.T.M.5
  • 7
    • 0000220170 scopus 로고
    • 4-Methylthio-3-butenyl Isothiocyanate, the Pungent Principle of Radish Root
    • Friis, P. a. A. K. 4-Methylthio-3-butenyl Isothiocyanate, the Pungent Principle of Radish Root. Acta Chem Scand 20, 698-705 (1966).
    • (1966) Acta Chem Scand , vol.20 , pp. 698-705
    • Friis, P.A.A.K.1
  • 8
    • 0041732170 scopus 로고    scopus 로고
    • The noble radish: Past, present and future
    • Curtis, I. S. The noble radish: past, present and future. Trends Plant Sci 8, 305-307 (2003).
    • (2003) Trends Plant Sci , vol.8 , pp. 305-307
    • Curtis, I.S.1
  • 9
    • 84922020423 scopus 로고    scopus 로고
    • Draft Sequences of the Radish (Raphanus sativus L.) Genome
    • Kitashiba, H. et al. Draft Sequences of the Radish (Raphanus sativus L.) Genome. DNA Res, doi:10.1093/dnares/dsu014 (2014).
    • (2014) DNA Res
    • Kitashiba, H.1
  • 10
    • 18844404205 scopus 로고    scopus 로고
    • Evolution of genome size in Brassicaceae
    • Johnston, J. S. et al. Evolution of genome size in Brassicaceae. Ann Bot 95, 229-235 (2005).
    • (2005) Ann Bot , vol.95 , pp. 229-235
    • Johnston, J.S.1
  • 11
    • 0034649566 scopus 로고    scopus 로고
    • The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
    • (2000) Nature , vol.408 , pp. 796-815
  • 12
    • 79955468851 scopus 로고    scopus 로고
    • The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    • Hu, T. T. et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 43, 476-483 (2011).
    • (2011) Nat Genet , vol.43 , pp. 476-483
    • Hu, T.T.1
  • 13
    • 42949157236 scopus 로고    scopus 로고
    • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    • Ming, R. et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452, 991-997 (2008).
    • (2008) Nature , vol.452 , pp. 991-997
    • Ming, R.1
  • 14
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • Koch, M. A., Haubold, B. & Mitchell-Olds, T. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17, 1483-1498 (2000).
    • (2000) Mol Biol Evol , vol.17 , pp. 1483-1498
    • Koch, M.A.1    Haubold, B.2    Mitchell-Olds, T.3
  • 15
    • 84860640144 scopus 로고    scopus 로고
    • The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata
    • de la Chaux, N., Tsuchimatsu, T., Shimizu, K. K. & Wagner, A. The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata. Mob DNA 3:2 (2012).
    • (2012) Mob DNA , vol.3 , pp. 2
    • De La Chaux, N.1    Tsuchimatsu, T.2    Shimizu, K.K.3    Wagner, A.4
  • 16
    • 32544436982 scopus 로고    scopus 로고
    • Glucosinolate metabolism and its control
    • Grubb, C. D. & Abel, S. Glucosinolate metabolism and its control. Trends Plant Sci 11, 89-100 (2006).
    • (2006) Trends Plant Sci , vol.11 , pp. 89-100
    • Grubb, C.D.1    Abel, S.2
  • 17
    • 77953366823 scopus 로고    scopus 로고
    • Biosynthesis of glucosinolates-gene discovery and beyond
    • Sønderby, I. E., Geu-Flores, F. & Halkier, B. A. Biosynthesis of glucosinolates-gene discovery and beyond. Trends Plant Sci 15, 283-290 (2010).
    • (2010) Trends Plant Sci , vol.15 , pp. 283-290
    • Sønderby, I.E.1    Geu-Flores, F.2    Halkier, B.A.3
  • 18
    • 80052888450 scopus 로고    scopus 로고
    • Glucosinolate biosynthetic genes in Brassica rapa
    • Wang, H. et al. Glucosinolate biosynthetic genes in Brassica rapa. Gene 487, 135-142 (2011).
    • (2011) Gene , vol.487 , pp. 135-142
    • Wang, H.1
  • 20
    • 0007694785 scopus 로고
    • Glucosinolate in Japanese Radish, Raphanus sativus L
    • Ishii, G. Glucosinolate in Japanese Radish, Raphanus sativus L. JARQ 24, 273-279 (1991).
    • (1991) JARQ , vol.24 , pp. 273-279
    • Ishii, G.1
  • 21
    • 34447094126 scopus 로고    scopus 로고
    • The R2R3-MYB transcription factor HAG1/MYB28 is a regulator of methionine-derived glucosinolate biosynthesis in Arabidopsis thaliana
    • Gigolashvili, T., Yatusevich, R., Berger, B., Muller, C. & Flugge, U. I. The R2R3-MYB transcription factor HAG1/MYB28 is a regulator of methionine-derived glucosinolate biosynthesis in Arabidopsis thaliana. Plant J 51, 247-261 (2007).
    • (2007) Plant J , vol.51 , pp. 247-261
    • Gigolashvili, T.1    Yatusevich, R.2    Berger, B.3    Muller, C.4    Flugge, U.I.5
  • 22
    • 34547526914 scopus 로고    scopus 로고
    • Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
    • Hirai, M. Y. et al. Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. P Natl Acad Sci USA 104, 6478-6483 (2007).
    • (2007) P Natl Acad Sci USA , vol.104 , pp. 6478-6483
    • Hirai, M.Y.1
  • 24
    • 41549133928 scopus 로고    scopus 로고
    • Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: Homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    • Panjabi, P. et al. Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics 9, 113 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 113
    • Panjabi, P.1
  • 25
    • 80054711619 scopus 로고    scopus 로고
    • Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.)
    • Li, F. et al. Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.). DNA Res 18, 401-411 (2011).
    • (2011) DNA Res , vol.18 , pp. 401-411
    • Li, F.1
  • 26
    • 33645508488 scopus 로고    scopus 로고
    • Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species
    • Lysak, M. A. et al. Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. P Natl Acad Sci USA 103 (2006).
    • (2006) P Natl Acad Sci USA , pp. 103
    • Lysak, M.A.1
  • 27
    • 0033584808 scopus 로고    scopus 로고
    • The Source and Fate of Massive Carbon Input During the Latest Paleocene Thermal Maximum
    • Katz, M. E., Pak, D. K., Dickens, G. R. & Miller, K. G. The Source and Fate of Massive Carbon Input During the Latest Paleocene Thermal Maximum. Science 286, 1531-1533 (1999).
    • (1999) Science , vol.286 , pp. 1531-1533
    • Katz, M.E.1    Pak, D.K.2    Dickens, G.R.3    Miller, K.G.4
  • 28
    • 0033618618 scopus 로고    scopus 로고
    • Mechanisms of climate warming at the end of the paleocene
    • Bains, S., Corfield, R. M. & Norris, R. D. Mechanisms of climate warming at the end of the paleocene. Science 285, 724-727 (1999).
    • (1999) Science , vol.285 , pp. 724-727
    • Bains, S.1    Corfield, R.M.2    Norris, R.D.3
  • 29
    • 2442459991 scopus 로고    scopus 로고
    • Sucrose metabolism: Regulatory mechanisms and pivotal roles in sugar sensing and plant development
    • Koch, K. Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and plant development. Curr Opin Plant Biol 7, 235-246 (2004).
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 235-246
    • Koch, K.1
  • 30
    • 0033214409 scopus 로고    scopus 로고
    • The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning
    • Sturm, A. & Tang, G. Q. The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci 4, 401-407 (1999).
    • (1999) Trends Plant Sci , vol.4 , pp. 401-407
    • Sturm, A.1    Tang, G.Q.2
  • 31
    • 0030802548 scopus 로고    scopus 로고
    • Increased potato tuber size resulting from apoplastic expression of a yeast invertase
    • Sonnewald, U. et al. Increased potato tuber size resulting from apoplastic expression of a yeast invertase. Nat Biotechnol 15, 794-797 (1997).
    • (1997) Nat Biotechnol , vol.15 , pp. 794-797
    • Sonnewald, U.1
  • 32
    • 0037259889 scopus 로고    scopus 로고
    • The role of invertases and hexose transporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development
    • Weschke, W. et al. The role of invertases and hexose transporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development. Plant J 33, 395-411 (2003).
    • (2003) Plant J , vol.33 , pp. 395-411
    • Weschke, W.1
  • 33
    • 0036008982 scopus 로고    scopus 로고
    • Spatial analysis of plant metabolism: Sucrose imaging within Vicia faba cotyledons reveals specific developmental patterns
    • Borisjuk, L. et al. Spatial analysis of plant metabolism: sucrose imaging within Vicia faba cotyledons reveals specific developmental patterns. Plant J 29, 521-530 (2002).
    • (2002) Plant J , vol.29 , pp. 521-530
    • Borisjuk, L.1
  • 34
    • 0027648572 scopus 로고
    • Expression of an Arabidopsis sucrose synthase gene indicates a role in metabolization of sucrose both during phloem loading and in sink organs
    • Martin, T., Frommer, W. B., Salanoubat, M. & Willmitzer, L. Expression of an Arabidopsis sucrose synthase gene indicates a role in metabolization of sucrose both during phloem loading and in sink organs. Plant J 4, 367-377 (1993).
    • (1993) Plant J , vol.4 , pp. 367-377
    • Martin, T.1    Frommer, W.B.2    Salanoubat, M.3    Willmitzer, L.4
  • 35
    • 0000578260 scopus 로고
    • Companion-Cell Specific Localization of Sucrose Synthase in Zones of Phloem Loading and Unloading
    • Nolte, K. D. & Koch, K. E. Companion-Cell Specific Localization of Sucrose Synthase in Zones of Phloem Loading and Unloading. Plant Physiol 101, 899-905 (1993).
    • (1993) Plant Physiol , vol.101 , pp. 899-905
    • Nolte, K.D.1    Koch, K.E.2
  • 36
    • 84864372943 scopus 로고    scopus 로고
    • Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish
    • Wang, S. et al. Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep 31, 1437-1447 (2012).
    • (2012) Plant Cell Rep , vol.31 , pp. 1437-1447
    • Wang, S.1
  • 37
    • 0038642261 scopus 로고    scopus 로고
    • Gene expression activity and pathway selection for sucrose metabolism in developing storage root of sweet potato
    • Li, X. Q. & Zhang, D. Gene expression activity and pathway selection for sucrose metabolism in developing storage root of sweet potato. Plant Cell Physiol 44, 630-636 (2003).
    • (2003) Plant Cell Physiol , vol.44 , pp. 630-636
    • Li, X.Q.1    Zhang, D.2
  • 38
    • 0029107792 scopus 로고
    • Evidence of the crucial role of sucrose synthase for sink strength using transgenic potato plants (Solanum tuberosum L.)
    • Zrenner, R., Salanoubat, M., Willmitzer, L. & Sonnewald, U. Evidence of the crucial role of sucrose synthase for sink strength using transgenic potato plants (Solanum tuberosum L.). Plant J 7, 97-107 (1995).
    • (1995) Plant J , vol.7 , pp. 97-107
    • Zrenner, R.1    Salanoubat, M.2    Willmitzer, L.3    Sonnewald, U.4
  • 39
    • 70349926022 scopus 로고    scopus 로고
    • Enhancing sucrose synthase activity in transgenic potato (Solanum tuberosum L.) tubers results in increased levels of starch, ADPglucose and UDPglucose and total yield
    • Baroja-Fernandez, E. et al. Enhancing sucrose synthase activity in transgenic potato (Solanum tuberosum L.) tubers results in increased levels of starch, ADPglucose and UDPglucose and total yield. Plant Cell Physiol 50, 1651-1662 (2009).
    • (2009) Plant Cell Physiol , vol.50 , pp. 1651-1662
    • Baroja-Fernandez, E.1
  • 40
    • 0000785628 scopus 로고
    • Sucrose Synthase, Starch Accumulation, and Tomato Fruit Sink Strength
    • Wang, F., Sanz, A., Brenner, M. L. & Smith, A. Sucrose Synthase, Starch Accumulation, and Tomato Fruit Sink Strength. Plant Physiol 101, 321-327 (1993).
    • (1993) Plant Physiol , vol.101 , pp. 321-327
    • Wang, F.1    Sanz, A.2    Brenner, M.L.3    Smith, A.4
  • 41
    • 79957528276 scopus 로고    scopus 로고
    • Plant sucrose transporters from a biophysical point of view
    • Geiger, D. Plant sucrose transporters from a biophysical point of view. Mol Plant 4, 395-406 (2011).
    • (2011) Mol Plant , vol.4 , pp. 395-406
    • Geiger, D.1
  • 42
    • 0031787120 scopus 로고    scopus 로고
    • Apoplastic sugars, fructans, fructan exohydrolase, and invertase in
    • winter oat: responses to second-phase cold hardening.
    • Livingston, D. P. & Henson, C. A. Apoplastic sugars, fructans, fructan exohydrolase, and invertase in winter oat: responses to second-phase cold hardening. Plant Physiol 116, 403-408 (1998).
    • (1998) Plant Physiol , vol.116 , pp. 403-408
    • Livingston, D.P.1    Henson, C.A.2
  • 43
    • 0033746927 scopus 로고    scopus 로고
    • Solute balance of a maize (Zea mays L.) source leaf as affected by salt treatment with special emphasis on phloem retranslocation and ion leaching
    • Lohaus, G. et al. Solute balance of a maize (Zea mays L.) source leaf as affected by salt treatment with special emphasis on phloem retranslocation and ion leaching. J Exp Bot 51, 1721-1732 (2000).
    • (2000) J Exp Bot , vol.51 , pp. 1721-1732
    • Lohaus, G.1
  • 44
    • 0028813459 scopus 로고
    • + symporter gene directs expression of β-glucuronidase to the phloem: Evidence for phloem loading and unloading by SUC2
    • + symporter gene directs expression of β-glucuronidase to the phloem: Evidence for phloem loading and unloading by SUC2. Planta 196, 564-570 (1995).
    • (1995) Planta , vol.196 , pp. 564-570
    • Truernit, E.1    Sauer, N.2
  • 45
    • 0346664427 scopus 로고    scopus 로고
    • The Sucrose Transporter StSUT1 Localizes to Sieve Elements in Potato Tuber Phloem and Influences Tuber Physiology and Development
    • Kühn, C. et al. The Sucrose Transporter StSUT1 Localizes to Sieve Elements in Potato Tuber Phloem and Influences Tuber Physiology and Development. Plant Physiol 131, 102-113 (2003).
    • (2003) Plant Physiol , vol.131 , pp. 102-113
    • Kühn, C.1
  • 46
    • 0002934697 scopus 로고
    • The control and pattern of movement of carbohydrates in plants
    • Wardlaw, I. F. The control and pattern of movement of carbohydrates in plants. Bot Rev 34, 79-105 (1968).
    • (1968) Bot Rev , vol.34 , pp. 79-105
    • Wardlaw, I.F.1
  • 47
    • 0002818644 scopus 로고
    • Pathways of Phloem Loading and Unloading: A Plea for Uniform Terminology
    • eds Pollock, C. J., Farrar, J. F. & Gordon, A. T. Oxford: Bios Scientific Publishers
    • Oparka, K. J. & Van Bel. A. J. E. Pathways of phloem loading and unloading: a plea for uniform terminology in Carbon partitioning within and between organisms (eds Pollock, C. J., Farrar, J. F. & Gordon, A. T.) 249-254 (Oxford: Bios Scientific Publishers, 1992).
    • (1992) Carbon Partitioning within and between Organisms , pp. 249-254
    • Oparka, K.J.1    Van Bel, A.J.E.2
  • 48
    • 33644893113 scopus 로고    scopus 로고
    • 2 on the capacity for photosynthesis of a single leaf and a whole plant, and on growth in a radish
    • 2 on the capacity for photosynthesis of a single leaf and a whole plant, and on growth in a radish. Plant Cell Physiol 47, 262-269 (2006).
    • (2006) Plant Cell Physiol , vol.47 , pp. 262-269
    • Usuda, H.1
  • 49
    • 0001733176 scopus 로고    scopus 로고
    • Sugar and metabolic regulation of genes for sucrose metabolism: Potential influence of maize sucrose synthase and soluble invertase responses on carbon partitioning and sugar sensing
    • Koch, K. E., Wu, Y. & Xu, J. Sugar and metabolic regulation of genes for sucrose metabolism: potential influence of maize sucrose synthase and soluble invertase responses on carbon partitioning and sugar sensing. J Exp Bot 47 Spec No, 1179-1185 (1996).
    • (1996) J Exp Bot , vol.47 , Issue.SPEC NO , pp. 1179-1185
    • Koch, K.E.1    Wu, Y.2    Xu, J.3
  • 50
    • 0035808553 scopus 로고    scopus 로고
    • The chemical diversity and distribution of glucosinolates and isothiocyanates among plants
    • Fahey, J. W., Zalcmann, A. T. & Talalay, P. The chemical diversity and distribution of glucosinolates and isothiocyanates among plants. Phytochemistry 56, 5-51 (2001).
    • (2001) Phytochemistry , vol.56 , pp. 5-51
    • Fahey, J.W.1    Zalcmann, A.T.2    Talalay, P.3
  • 51
    • 0035204571 scopus 로고    scopus 로고
    • A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway
    • Kroymann, J. et al. A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway. Plant Physiol 127, 1077-1088 (2001).
    • (2001) Plant Physiol , vol.127 , pp. 1077-1088
    • Kroymann, J.1
  • 52
    • 34250663450 scopus 로고    scopus 로고
    • MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis
    • Textor, S., de Kraker, J. W., Hause, B., Gershenzon, J. & Tokuhisa, J. G. MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis. Plant Physiol 144, 60-71 (2007).
    • (2007) Plant Physiol , vol.144 , pp. 60-71
    • Textor, S.1    De Kraker, J.W.2    Hause, B.3    Gershenzon, J.4    Tokuhisa, J.G.5
  • 53
    • 0033748088 scopus 로고    scopus 로고
    • CDNA cloning of radish (Raphanus sativus) myrosinase and tissue-specific expression in root
    • Hara, M., Fujii, Y., Sasada, Y. & Kuboi, T. CDNA cloning of radish (Raphanus sativus) myrosinase and tissue-specific expression in root. Plant Cell Physiol 41, 1102-1109 (2000).
    • (2000) Plant Cell Physiol , vol.41 , pp. 1102-1109
    • Hara, M.1    Fujii, Y.2    Sasada, Y.3    Kuboi, T.4
  • 54
    • 43649090411 scopus 로고    scopus 로고
    • Comparison of the glucosinolate-myrosinase systems among daikon (Raphanus sativus, Japanese white radish) varieties
    • Nakamura, Y. et al. Comparison of the glucosinolate-myrosinase systems among daikon (Raphanus sativus, Japanese white radish) varieties. J Agr Food Chem 56, 2702-2707 (2008).
    • (2008) J Agr Food Chem , vol.56 , pp. 2702-2707
    • Nakamura, Y.1
  • 55
    • 66749170767 scopus 로고    scopus 로고
    • Are isothiocyanates potential anti-cancer drugs?
    • Wu, X., Zhou, Q. H. & Xu, K. Are isothiocyanates potential anti-cancer drugs? Acta Pharm Sinic 30, 501-512 (2009).
    • (2009) Acta Pharm Sinic , vol.30 , pp. 501-512
    • Wu, X.1    Zhou, Q.H.2    Xu, K.3
  • 56
    • 0003294946 scopus 로고    scopus 로고
    • Construction of plant bacterial artificial chromosome (BAC) libraries: An illustrated guide
    • Peterson, D. G., Tomkins, J. P., Frisch, D. A., Wing, R. A. & Paterson, A. H. Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide. J Agric Genomics 5, 1-100 (2000).
    • (2000) J Agric Genomics , vol.5 , pp. 1-100
    • Peterson, D.G.1    Tomkins, J.P.2    Frisch, D.A.3    Wing, R.A.4    Paterson, A.H.5
  • 57
    • 84871396799 scopus 로고    scopus 로고
    • Ray Meta: Scalable de novo metagenome assembly and profiling
    • Boisvert, S., Raymond, F., Godzaridis, E., Laviolette, F. & Corbeil, J. Ray Meta: scalable de novo metagenome assembly and profiling. Genome Biol 13, R122, doi:10.1186/gb-2012-13-12-r122 (2012).
    • (2012) Genome Biol , vol.13 , pp. R122
    • Boisvert, S.1    Raymond, F.2    Godzaridis, E.3    Laviolette, F.4    Corbeil, J.5
  • 59
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W. J. BLAT - the BLAST-like alignment tool. Genome Res 12, 656-664 (2002).
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 60
    • 79551624472 scopus 로고    scopus 로고
    • Considering transposable element diversification in de novo annotation approaches
    • Flutre, T., Duprat, E., Feuillet, C. & Quesneville, H. Considering transposable element diversification in de novo annotation approaches. PLoS One 6, e16526 (2011).
    • (2011) PLoS One , vol.6
    • Flutre, T.1    Duprat, E.2    Feuillet, C.3    Quesneville, H.4
  • 61
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn, R. D., Clements, J. & Eddy, S. R. HMMER web server: interactive sequence similarity searching. Nucl Acids Res, gkr367 (2011).
    • (2011) Nucl Acids Res , pp. gkr367
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 62
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden Markov model and a new intron submodel
    • Stanke, M. & Waack, S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 Suppl 2, ii215-225 (2003).
    • (2003) Bioinformatics , vol.19 , pp. ii215-ii225
    • Stanke, M.1    Waack, S.2
  • 63
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29, 644-652 (2011).
    • (2011) Nat Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 64
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice, P., Longden, I. & Bleasby, A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16, 276-277 (2000).
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 66
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - An integration platform for the signature-recognition methods in InterPro
    • Zdobnov, E. M. & Apweiler, R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 67
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. & Godzik, A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 68
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C. J., Jr. & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13, 2178-2189 (2003).
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 69
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24, 1586-1591 (2007).
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 70
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne, J. L. & Kishino, H. Divergence time and evolutionary rate estimation with multilocus data. Syst Biol 51, 689-702 (2002).
    • (2002) Syst Biol , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 71
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 72
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • Ronquist, F. et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61, 539-542 (2012).
    • (2012) Syst Biol , vol.61 , pp. 539-542
    • Ronquist, F.1
  • 73
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7, 539 (2011).
    • (2011) Mol Syst Biol , vol.7 , pp. 539
    • Sievers, F.1
  • 74
    • 84871345497 scopus 로고    scopus 로고
    • on www.arabidopsis.org, Date of access: 01/06/2013
    • The Arabidopsis Information Resource (TAIR), [ftp://ftp.arabidopsis.org/home/tair/Ontologies/], on www.arabidopsis.org, Date of access: 01/06/2013.
    • The Arabidopsis Information Resource (TAIR)
  • 75
    • 80051963684 scopus 로고    scopus 로고
    • An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae
    • Shirasawa, K. et al. An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae. DNA Res 18, 221-232 (2011).
    • (2011) DNA Res , vol.18 , pp. 221-232
    • Shirasawa, K.1
  • 76
    • 84866901057 scopus 로고    scopus 로고
    • Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes
    • Cho, Y., Lee, Y. P., Park, B. S., Han, T. H. & Kim, S. Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. Theor Appl Genet 125, 467-477 (2012).
    • (2012) Theor Appl Genet , vol.125 , pp. 467-477
    • Cho, Y.1    Lee, Y.P.2    Park, B.S.3    Han, T.H.4    Kim, S.5
  • 77
    • 84860137835 scopus 로고    scopus 로고
    • MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity
    • Wang, Y. et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 40, e49 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. e49
    • Wang, Y.1
  • 78
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • Krzywinski, M. et al. Circos: an information aesthetic for comparative genomics. Genome Res 19, 1639-1645 (2009).
    • (2009) Genome Res , vol.19 , pp. 1639-1645
    • Krzywinski, M.1
  • 79
    • 84872140551 scopus 로고    scopus 로고
    • QTL analysis using SNP markers developed by next-generation sequencing for identification of candidate genes controlling 4-methylthio-3-butenyl glucosinolate contents in roots of radish, Raphanus sativus L
    • Zou, Z. et al. QTL analysis using SNP markers developed by next-generation sequencing for identification of candidate genes controlling 4-methylthio-3-butenyl glucosinolate contents in roots of radish, Raphanus sativus L. PLoS One 8, e53541 (2013).
    • (2013) PLoS One , vol.8
    • Zou, Z.1


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