A genomic perspective on plant transcription factors

Current Opinion in Plant Biology

Volumn 3, Issue 5, 2000, Pages 423-434

  Riechmann, José Luis ^a   Ratcliffe, Oliver J ^a  

^a Mendel Biotechnology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

EID: 0033828167     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5266(00)00107-2     Document Type: Review

References (90)

1. Plant functional genomics
2. Transcription factors and their genes in higher plants. Functional domains, evolution and regulation
3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana
5. The genome sequence of Drosophila melanogaster
6. Comparison of the complete protein sets of worm and yeast: Orthology and divergence
7. Comparative genomics of the eukaryotes
8. Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants
9. A short history of MADS-box genes in plants
10. Plant tagnology
11. A two-component Enhancer-Inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome
12. Multiple independent defective Suppressor-Mutator transposon insertions in Arabidopsis : A tool for functional genomics
13. Analysis of flanking sequences from Dissociation insertion lines : A database for reverse genetics in Arabidopsis
14. Saturation mutagenesis using maize transposons
15. T-DNA as an insertional mutagen in Arabidopsis
16. Multifunctionality and diversity within the plant MYB-gene family
17. More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana
18. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana
19. Function search in a large transcription factor gene family in Arabidopsis: Assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes
20. Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination
21. B and C floral organ identity functions require SEPALLATA MADS-box genes
22. Shatterproof MADS-box genes control seed dispersal in Arabidopsis
23. INTERFASCICULAR FIBERLESS1 is the same gene as REVOLUTA
24. RNA interference: Genetic wand and genetic watchdog
25. Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA
26. Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana
27. Fast forward genetics based on virus-induced gene silencing
28. Targeted manipulation of maize genes in vivo using chimeric RNA/DNA oligonucleotides
29. A tool for functional plant genomics: Chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations
30. MADS domain proteins in plant development
31. Molecular basis of the cauliflower phenotype in Arabidopsis
32. Genetic interactions among floral homeotic genes of Arabidopsis
33. PLENA and FARINELLI: Redundancy and regulatory interactions between two Antirrhinum MADS-box factors controlling flower development
34. Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER
35. The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development
36. The embryo MADS domain factor AGL15 acts postembryonically: Inhibition of perianth senescence and abscission via constitutive expression
37. Plant size organ control: AINTEGUMENTA regulates growth and cell numbers during organogenesis
38. Ectopic expression of AINTEGUMENTA in Arabidopsis plants results in increased growth of floral organs
39. Shade avoidance responses are mediated by the ATHB-2 HD-Zip protein, a negative regulator of gene expression
40. Activation tagging in Arabidopsis
41. Activation tagging of the floral inducer FT
42. The Arabidopsis dwarf mutant shi exhibits reduced gibberellin responses conferred by overexpression of a new putative zinc finger protein
43. ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis
44. The stem cell population of Arabidopsis shoot meristems is maintained by a regulatory loop between the CLAVATA and WUSCHEL genes
45. A genetic framework for floral patterning
46. Activation of a floral homeotic gene in Arabidopsis
47. Activation of floral meristem identity genes in Arabidopsis
48. A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA
49. Transcriptional activation of AP1 by LEAFY
50. Chasing the dream: Plant EST microarrays
51. Monitoring genome-wide expression in plants
52. Towards Arabidopsis genome analysis: Monitoring expression profiles of 1400 genes using cDNA microarrays
53. Expression profiling of the maize flavonoid pathway genes controlled by estradiol-inducible transcription factors CRC and P
54. How genes paint flowers and seeds
55. Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae
56. Identification of target sites of the α2-Mcm1 repressor complex in the yeast genome
57. Transcriptional regulation in plants: The importance of combinatorial control
58. Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-I gene
59. The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZlP transcription factors
60. A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription
61. Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFIClENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus
62. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
63. Protein interaction mapping in C. elegans using proteins involved in vulval development
64. The Yeast Proteome Database (YPD): A model for the organization and presentation of genome-wide functional data
65. The Arabidopsis Information Resource, TAIR
66. The C. elegans Sequencing Consortium: Genome sequence of the nematode C. elegans: A platform for investigating biology
67. The taxonomy of developmental control in Caenorhabditis elegans
68. Zinc fingers in Caenorhabditis elegans: Finding families and probing pathways
69. The Arabidopsis abscisic acid response gene AB/5 encodes a basic leucine zipper transcription factor
70. CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains
71. Control of organ asymmetry in flowers of Antirrhinum
72. FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains
73. INNER NO OUTER regulates abaxial-adaxial patterning in Arabidopsis ovules
74. A Kruppel-like zinc finger protein is involved in nitrogen-fixing root nodule organogenesis
75. A plant regulator controlling development of symbiotic root nodules
76. Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana
77. poc1: An Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein
78. IFL1, a gene regulating interfascicular fiber differentiation in Arabidopsis, encodes a homeodomain-leucine zipper protein
79. 'Green revolution' genes encode mutant gibberellin response regulators
80. Molecular cloning of SVP: A negative regulator of the floral transition in Arabidopsis
81. Molecular and genetic analyses of the Silky1 gene reveal conservation in floral organ specification between eudicots and monocots
82. The SPOROCYTELESS gene of Arabidopsis is required for initiation of sporogenesis and encodes a novel nuclear protein
83. Arabidopsis STERILE APETALA, a multifunctional gene regulating inflorescence, flower, and ovule development
84. WEREWOLF, a MYB-related protein in Arabidopsis, is a position-dependent regulator of epidermal cell patterning
85. Targeted screening for induced mutations
86. Targeting induced local lesions in genomes (TILLING) for plant functional genomics
87. ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism
88. Distinct roles of CONSTANS target genes in reproductive development in Arabidopsis
89. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays
90. Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis