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Volumn 14, Issue 1, 2014, Pages

Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing

Author keywords

Digital expression profiling; Gene ontology; High throughput sequencing; microRNA; Potato; QRT PCR; RLM RACE; Target; Tuberization

Indexed keywords

SOLANUM TUBEROSUM;

EID: 84892184020     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-14-6     Document Type: Article
Times cited : (95)

References (65)
  • 1
    • 84877677064 scopus 로고    scopus 로고
    • Classification and comparison of small RNAs from plants
    • 10.1146/annurev-arplant-050312-120043, 23330790
    • Axtell JM. Classification and comparison of small RNAs from plants. Annu Rev Plant Biol 2013, 64:137-159. 10.1146/annurev-arplant-050312-120043, 23330790.
    • (2013) Annu Rev Plant Biol , vol.64 , pp. 137-159
    • Axtell, J.M.1
  • 2
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • 10.1146/annurev.cellbio.042308.113417, 19575669
    • Chen X. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009, 25:21-44. 10.1146/annurev.cellbio.042308.113417, 19575669.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 21-44
    • Chen, X.1
  • 3
    • 84883167952 scopus 로고    scopus 로고
    • Biogenesis, turnover, and mode of action of plant MicroRNAs
    • 10.1105/tpc.113.113159, 3753372, 23881412
    • Rogers K, Chen X. Biogenesis, turnover, and mode of action of plant MicroRNAs. Plant Cell 2013, 25:2383-2399. 10.1105/tpc.113.113159, 3753372, 23881412.
    • (2013) Plant Cell , vol.25 , pp. 2383-2399
    • Rogers, K.1    Chen, X.2
  • 4
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • 10.1016/j.bbagrm.2008.04.004, 18457682
    • Shukla LI, Chinnusamy V, Sunkar R. The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 2008, 1779(11):743-748. 10.1016/j.bbagrm.2008.04.004, 18457682.
    • (2008) Biochim Biophys Acta , vol.1779 , Issue.11 , pp. 743-748
    • Shukla, L.I.1    Chinnusamy, V.2    Sunkar, R.3
  • 5
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • 10.1038/ng1478, 15565108
    • Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004, 36(12):1282-1290. 10.1038/ng1478, 15565108.
    • (2004) Nat Genet , vol.36 , Issue.12 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 7
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • 10.1101/gad.1476406, 1698448, 17182867
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20(24):3407-3425. 10.1101/gad.1476406, 1698448, 17182867.
    • (2006) Genes Dev , vol.20 , Issue.24 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 8
    • 53549106068 scopus 로고    scopus 로고
    • Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    • 10.1101/gr.080127.108, 2556272, 18653800
    • Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res 2008, 18(10):1602-1609. 10.1101/gr.080127.108, 2556272, 18653800.
    • (2008) Genome Res , vol.18 , Issue.10 , pp. 1602-1609
    • Moxon, S.1    Jing, R.2    Szittya, G.3    Schwach, F.4    Rusholme Pilcher, R.L.5    Moulton, V.6    Dalmay, T.7
  • 9
    • 84855481496 scopus 로고    scopus 로고
    • Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits
    • 10.1186/1471-2164-13-7, 3266637, 22230737
    • Zuo J, Zhu B, Fu D, Zhu Y, Ma Y, Chi L, Ju Z, Wang Y, Zhai B, Luo Y. Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits. BMC Genomics 2012, 13:7. 10.1186/1471-2164-13-7, 3266637, 22230737.
    • (2012) BMC Genomics , vol.13 , pp. 7
    • Zuo, J.1    Zhu, B.2    Fu, D.3    Zhu, Y.4    Ma, Y.5    Chi, L.6    Ju, Z.7    Wang, Y.8    Zhai, B.9    Luo, Y.10
  • 10
    • 79956081784 scopus 로고    scopus 로고
    • High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs
    • 10.1371/journal.pone.0019523, 3095615, 21603611
    • Martinez G, Forment J, Llave C, Pallas V, Gomez G. High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs. PLoS One 2011, 6(5):e19523. 10.1371/journal.pone.0019523, 3095615, 21603611.
    • (2011) PLoS One , vol.6 , Issue.5
    • Martinez, G.1    Forment, J.2    Llave, C.3    Pallas, V.4    Gomez, G.5
  • 11
    • 84872847672 scopus 로고    scopus 로고
    • Deep sequencing of maize small RNAs reveals a diverse set of MicroRNA in dry and imbibed seeds
    • 10.1371/journal.pone.0055107, 3554676, 23359822
    • Li D, Wang L, Liu X, Cui D, Chen T, Zhang H, Jiang C, Xu C, Li P, Li S, Zhao L, Chen H. Deep sequencing of maize small RNAs reveals a diverse set of MicroRNA in dry and imbibed seeds. PLoS One 2013, 8(1):e55107. 10.1371/journal.pone.0055107, 3554676, 23359822.
    • (2013) PLoS One , vol.8 , Issue.1
    • Li, D.1    Wang, L.2    Liu, X.3    Cui, D.4    Chen, T.5    Zhang, H.6    Jiang, C.7    Xu, C.8    Li, P.9    Li, S.10    Zhao, L.11    Chen, H.12
  • 12
    • 81155134417 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing
    • 10.1371/journal.pone.0027530, 3217988, 22110666
    • Chi X, Yang Q, Chen X, Wang J, Pan L, Chen M, Yang Z, He Y, Liang X, Yu S. Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing. PLoS One 2011, 6(11):e27530. 10.1371/journal.pone.0027530, 3217988, 22110666.
    • (2011) PLoS One , vol.6 , Issue.11
    • Chi, X.1    Yang, Q.2    Chen, X.3    Wang, J.4    Pan, L.5    Chen, M.6    Yang, Z.7    He, Y.8    Liang, X.9    Yu, S.10
  • 13
    • 84878511568 scopus 로고    scopus 로고
    • The hot pepper (Capsicum annuum) MicroRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper
    • 10.1371/journal.pone.0064238, 3667847, 23737975
    • Hwang D-G, Park JH, Lim JY, Kim D, Choi Y, Kim S, Reeves G, Yeom SI, Lee JS, Park M, Kim S, Choi IY, Choi D, Shin C. The hot pepper (Capsicum annuum) MicroRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper. PLoS ONE 2013, 8(5):e64238. 10.1371/journal.pone.0064238, 3667847, 23737975.
    • (2013) PLoS ONE , vol.8 , Issue.5
    • Hwang, D.-G.1    Park, J.H.2    Lim, J.Y.3    Kim, D.4    Choi, Y.5    Kim, S.6    Reeves, G.7    Yeom, S.I.8    Lee, J.S.9    Park, M.10    Kim, S.11    Choi, I.Y.12    Choi, D.13    Shin, C.14
  • 14
    • 77955375546 scopus 로고    scopus 로고
    • Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
    • 10.1186/1471-2164-11-431, 2996959, 20626894
    • Song C, Wang C, Zhang C, Korir NK, Yu H, Ma Z, Fang J. Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). BMC Genomics 2010, 11:431. 10.1186/1471-2164-11-431, 2996959, 20626894.
    • (2010) BMC Genomics , vol.11 , pp. 431
    • Song, C.1    Wang, C.2    Zhang, C.3    Korir, N.K.4    Yu, H.5    Ma, Z.6    Fang, J.7
  • 15
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • 10.1101/gr.6897308, 2279245, 18323537
    • Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 2008, 18(4):571-584. 10.1101/gr.6897308, 2279245, 18323537.
    • (2008) Genome Res , vol.18 , Issue.4 , pp. 571-584
    • Morin, R.D.1    Aksay, G.2    Dolgosheina, E.3    Ebhardt, H.A.4    Magrini, V.5    Mardis, E.R.6    Sahinalp, S.C.7    Unrau, P.J.8
  • 16
    • 33947543880 scopus 로고    scopus 로고
    • Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway
    • 10.1105/tpc.106.042473, 1785412, 17189340
    • Banerjee AK, Chatterjee M, Yu Y, Suh SG, Miller WA, Hannapel DJ. Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell 2006, 18(12):3443-3457. 10.1105/tpc.106.042473, 1785412, 17189340.
    • (2006) Plant Cell , vol.18 , Issue.12 , pp. 3443-3457
    • Banerjee, A.K.1    Chatterjee, M.2    Yu, Y.3    Suh, S.G.4    Miller, W.A.5    Hannapel, D.J.6
  • 17
    • 33745947900 scopus 로고    scopus 로고
    • Seasonal control of tuberization in potato: conserved elements with the flowering response
    • 10.1146/annurev.arplant.57.032905.105224, 16669759
    • Rodriguez-Falcon M, Bou J, Prat S. Seasonal control of tuberization in potato: conserved elements with the flowering response. Annu Rev Plant Biol 2006, 57:151-180. 10.1146/annurev.arplant.57.032905.105224, 16669759.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 151-180
    • Rodriguez-Falcon, M.1    Bou, J.2    Prat, S.3
  • 18
    • 79954420757 scopus 로고    scopus 로고
    • From the model to the crop: genes controlling tuber formation in potato
    • 10.1016/j.copbio.2010.11.013, 21168321
    • Abelenda JA, Navarro C, Prat S. From the model to the crop: genes controlling tuber formation in potato. Curr Opin Biotechnol 2011, 22(2):287-292. 10.1016/j.copbio.2010.11.013, 21168321.
    • (2011) Curr Opin Biotechnol , vol.22 , Issue.2 , pp. 287-292
    • Abelenda, J.A.1    Navarro, C.2    Prat, S.3
  • 19
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • 10.1038/nature10158, 21743474, Potato Genome Sequencing Consortium
    • Potato Genome Sequencing Consortium Genome sequence and analysis of the tuber crop potato. Nature 2011, 475(7355):189-195. 10.1038/nature10158, 21743474, Potato Genome Sequencing Consortium.
    • (2011) Nature , vol.475 , Issue.7355 , pp. 189-195
  • 20
    • 69049107564 scopus 로고    scopus 로고
    • Graft-transmissible induction of potato tuberization by the microRNA miR172
    • 10.1242/dev.031658, 19666819
    • Martin A, Adam H, Diaz-Mendoza M, Zurczak M, Gonzalez-Schain ND, Suárez-López P. Graft-transmissible induction of potato tuberization by the microRNA miR172. Development 2009, 136(17):2873-2881. 10.1242/dev.031658, 19666819.
    • (2009) Development , vol.136 , Issue.17 , pp. 2873-2881
    • Martin, A.1    Adam, H.2    Diaz-Mendoza, M.3    Zurczak, M.4    Gonzalez-Schain, N.D.5    Suárez-López, P.6
  • 21
    • 84879298483 scopus 로고    scopus 로고
    • A cytokinin-activating enzyme promotes tuber formation in tomato
    • 10.1016/j.cub.2013.04.061, 23746638
    • Eviatar-Ribak T, Shalit-Kaneh A, Chappell-Maor L, Amsellem Z, Eshed Y, Lifschitz E. A cytokinin-activating enzyme promotes tuber formation in tomato. Curr Biol 2013, 23(12):1057-1064. 10.1016/j.cub.2013.04.061, 23746638.
    • (2013) Curr Biol , vol.23 , Issue.12 , pp. 1057-1064
    • Eviatar-Ribak, T.1    Shalit-Kaneh, A.2    Chappell-Maor, L.3    Amsellem, Z.4    Eshed, Y.5    Lifschitz, E.6
  • 23
    • 57749175110 scopus 로고    scopus 로고
    • Computational identification of 48 potato microRNAs and their targets
    • 10.1016/j.compbiolchem.2008.07.006, 18723398
    • Zhang W, Luo Y, Gong X, Zeng W, Li S. Computational identification of 48 potato microRNAs and their targets. Comput Biol Chem 2009, 33(1):84-93. 10.1016/j.compbiolchem.2008.07.006, 18723398.
    • (2009) Comput Biol Chem , vol.33 , Issue.1 , pp. 84-93
    • Zhang, W.1    Luo, Y.2    Gong, X.3    Zeng, W.4    Li, S.5
  • 24
    • 79251603621 scopus 로고    scopus 로고
    • Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum)
    • Xie F, Frazier TP, Zhang B. Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum). Gene 2010, 473(1):8-22.
    • (2010) Gene , vol.473 , Issue.1 , pp. 8-22
    • Xie, F.1    Frazier, T.P.2    Zhang, B.3
  • 25
    • 77956966608 scopus 로고    scopus 로고
    • Prediction and validation of conservative microRNAs of Solanum tuberosum L
    • 10.1007/s11033-009-9881-z, 19882234
    • Yang W, Liu X, Zhang J, Feng J, Li C, Chen J. Prediction and validation of conservative microRNAs of Solanum tuberosum L. Mol Biol Rep 2010, 37(7):3081-3087. 10.1007/s11033-009-9881-z, 19882234.
    • (2010) Mol Biol Rep , vol.37 , Issue.7 , pp. 3081-3087
    • Yang, W.1    Liu, X.2    Zhang, J.3    Feng, J.4    Li, C.5    Chen, J.6
  • 26
    • 79958294087 scopus 로고    scopus 로고
    • In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants
    • 10.1139/G10-104, 21326365
    • Kim HJ, Baek KH, Lee BW, Choi D, Hur CG. In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants. Genome 2011, 54(2):91-98. 10.1139/G10-104, 21326365.
    • (2011) Genome , vol.54 , Issue.2 , pp. 91-98
    • Kim, H.J.1    Baek, K.H.2    Lee, B.W.3    Choi, D.4    Hur, C.G.5
  • 27
    • 84863693752 scopus 로고    scopus 로고
    • The tomato genome sequence provides insights into fleshy fruit evolution
    • 10.1038/nature11119, 3378239, 22660326, Tomato Genome Consortium
    • Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature 2012, 485(7400):635-641. 10.1038/nature11119, 3378239, 22660326, Tomato Genome Consortium.
    • (2012) Nature , vol.485 , Issue.7400 , pp. 635-641
  • 28
    • 84874331148 scopus 로고    scopus 로고
    • Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing
    • 10.1371/journal.pone.0057233, 3578796, 23437348
    • Zhang R, Marshall D, Bryan GJ, Hornyik C. Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing. PLoS One 2013, 8(2):e57233. 10.1371/journal.pone.0057233, 3578796, 23437348.
    • (2013) PLoS One , vol.8 , Issue.2
    • Zhang, R.1    Marshall, D.2    Bryan, G.J.3    Hornyik, C.4
  • 29
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 2010, 62(6):960-976.
    • (2010) Plant J , vol.62 , Issue.6 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3    Miozzi, L.4    Moulton, V.5    Dalmay, T.6    Burgyan, J.7
  • 30
    • 39549115890 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from wheat (Triticum aestivum L)
    • 10.1186/gb-2007-8-6-r96, 2394755, 17543110
    • Yao YY, Guo GG, Ni ZF, Sunkar R, Du JK, Zhu JK, Sun QX. Cloning and characterization of microRNAs from wheat (Triticum aestivum L). Genome Biol 2007, 8(6):R96. 10.1186/gb-2007-8-6-r96, 2394755, 17543110.
    • (2007) Genome Biol , vol.8 , Issue.6
    • Yao, Y.Y.1    Guo, G.G.2    Ni, Z.F.3    Sunkar, R.4    Du, J.K.5    Zhu, J.K.6    Sun, Q.X.7
  • 31
    • 62549095240 scopus 로고    scopus 로고
    • High-throughput sequencing technology reveals that the taxoid elicitormethyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)
    • Qiu D, Pan X, Wilson IW, Ketchum REB, Li F, Liu M, Teng W, Zhang BH. High-throughput sequencing technology reveals that the taxoid elicitormethyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). Gene 2009, 436(1-2):37-44.
    • (2009) Gene , vol.436 , Issue.1-2 , pp. 37-44
    • Qiu, D.1    Pan, X.2    Wilson, I.W.3    Ketchum, R.E.B.4    Li, F.5    Liu, M.6    Teng, W.7    Zhang, B.H.8
  • 32
    • 52949088691 scopus 로고    scopus 로고
    • A toolkit for analysing large-scale plant small RNA datasets
    • 10.1093/bioinformatics/btn428, 18713789
    • Moxon S, Schwach F, MacLean D, Dalmay T, Studholme DJ, Moulton V. A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 2008, 24(19):2252-2253. 10.1093/bioinformatics/btn428, 18713789.
    • (2008) Bioinformatics , vol.24 , Issue.19 , pp. 2252-2253
    • Moxon, S.1    Schwach, F.2    MacLean, D.3    Dalmay, T.4    Studholme, D.J.5    Moulton, V.6
  • 35
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • 10.1093/nar/gkq1027, 3013655, 21037258
    • Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011, 39:D152-D157. 10.1093/nar/gkq1027, 3013655, 21037258.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 36
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31(13):3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 37
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • 10.1111/j.1365-313X.2006.02697.x, 16623887
    • Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA. Conservation and divergence of plant microRNA genes. Plant J 2006, 46(2):243-259. 10.1111/j.1365-313X.2006.02697.x, 16623887.
    • (2006) Plant J , vol.46 , Issue.2 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 38
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • 10.1093/bioinformatics/bth374, 15217813
    • Bonnet E, Wuyts J, Rouze P, Van de Peer Y. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 2004, 20(17):2911-2917. 10.1093/bioinformatics/bth374, 15217813.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van de Peer, Y.4
  • 39
    • 84866979410 scopus 로고    scopus 로고
    • Reducing ligation bias of small RNAs in libraries for next generation sequencing
    • 10.1186/1758-907X-3-4, 3489589, 22647250
    • Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence 2012, 3(1):4. 10.1186/1758-907X-3-4, 3489589, 22647250.
    • (2012) Silence , vol.3 , Issue.1 , pp. 4
    • Sorefan, K.1    Pais, H.2    Hall, A.E.3    Kozomara, A.4    Griffiths-Jones, S.5    Moulton, V.6    Dalmay, T.7
  • 40
    • 79959967431 scopus 로고    scopus 로고
    • PsRNATarget: a plant small RNA target analysis server
    • 10.1093/nar/gkr319, 3125753, 21622958
    • Dai X, Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39:W155-W159. 10.1093/nar/gkr319, 3125753, 21622958.
    • (2011) Nucleic Acids Res , vol.39
    • Dai, X.1    Zhao, P.X.2
  • 41
    • 78650971549 scopus 로고    scopus 로고
    • Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    • 10.1186/1471-2229-11-5, 3023735, 21219599
    • Song QX, Liu YF, Hu XF, Zhang WK, Ma B, Chen SY, Zhang JS. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5. 10.1186/1471-2229-11-5, 3023735, 21219599.
    • (2011) BMC Plant Biol , vol.11 , pp. 5
    • Song, Q.X.1    Liu, Y.F.2    Hu, X.F.3    Zhang, W.K.4    Ma, B.5    Chen, S.Y.6    Zhang, J.S.7
  • 42
    • 0035056359 scopus 로고    scopus 로고
    • Lipoxygenase is involved in the control of potato tuber development
    • 135504, 11251100
    • Kolomiets MV, Hannapel DJ, Chen H, Tymeson M, Gladon RJ. Lipoxygenase is involved in the control of potato tuber development. Plant Cell 2001, 13(3):613-626. 135504, 11251100.
    • (2001) Plant Cell , vol.13 , Issue.3 , pp. 613-626
    • Kolomiets, M.V.1    Hannapel, D.J.2    Chen, H.3    Tymeson, M.4    Gladon, R.J.5
  • 43
    • 77952552964 scopus 로고    scopus 로고
    • Protein phosphatases type 2A mediate tuberization siganling in Solanum tuberosum L. leaves
    • 10.1007/s00425-010-1150-9, 20358221
    • País SM, García MN, Téllez-Iñón MT, Capiati DA. Protein phosphatases type 2A mediate tuberization siganling in Solanum tuberosum L. leaves. Planta 2010, 232(1):37-49. 10.1007/s00425-010-1150-9, 20358221.
    • (2010) Planta , vol.232 , Issue.1 , pp. 37-49
    • País, S.M.1    García, M.N.2    Téllez-Iñón, M.T.3    Capiati, D.A.4
  • 45
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • 10.1016/0092-8674(93)90529-Y, 8252621
    • Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75(5):843-854. 10.1016/0092-8674(93)90529-Y, 8252621.
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 46
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • 10.1016/j.cell.2009.01.046, 19239888
    • Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136(4):669-687. 10.1016/j.cell.2009.01.046, 19239888.
    • (2009) Cell , vol.136 , Issue.4 , pp. 669-687
    • Voinnet, O.1
  • 47
    • 84864959740 scopus 로고    scopus 로고
    • " And yet it moves" : Cell-to-cell and long-distance signalling by plant microRNAs
    • Marín-González E, Suárez-López P. " And yet it moves" : Cell-to-cell and long-distance signalling by plant microRNAs. Plant Sci 2012, 196:18-30.
    • (2012) Plant Sci , vol.196 , pp. 18-30
    • Marín-González, E.1    Suárez-López, P.2
  • 48
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
    • 10.1105/tpc.105.030841, 1091761, 15829603
    • Guo HS, Xie Q, Fei JF, Chua NH. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 2005, 17(5):1376-1386. 10.1105/tpc.105.030841, 1091761, 15829603.
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1376-1386
    • Guo, H.S.1    Xie, Q.2    Fei, J.F.3    Chua, N.H.4
  • 49
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • 10.1016/j.cub.2004.06.022, 15202996
    • Mallory AC, Dugas DV, Bartel DP, Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 2004, 14(12):1035-1046. 10.1016/j.cub.2004.06.022, 15202996.
    • (2004) Curr Biol , vol.14 , Issue.12 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 50
    • 44349155320 scopus 로고    scopus 로고
    • MicroRNA166 controls root and nodule development in Medicago truncatula
    • 10.1111/j.1365-313X.2008.03448.x, 18298674
    • Boualem A, Laporte P, Jovanovic M, Laffont C, Plet J, Combier JP, Niebel A, Crespi M, Frugier F. MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J 2008, 54(5):876-887. 10.1111/j.1365-313X.2008.03448.x, 18298674.
    • (2008) Plant J , vol.54 , Issue.5 , pp. 876-887
    • Boualem, A.1    Laporte, P.2    Jovanovic, M.3    Laffont, C.4    Plet, J.5    Combier, J.P.6    Niebel, A.7    Crespi, M.8    Frugier, F.9
  • 51
    • 24944443408 scopus 로고    scopus 로고
    • Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
    • Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 2008, 132(16):3657-3668.
    • (2008) Development , vol.132 , Issue.16 , pp. 3657-3668
    • Williams, L.1    Grigg, S.P.2    Xie, M.3    Christensen, S.4    Fletcher, J.C.5
  • 52
    • 20144387641 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems
    • 10.1111/j.1365-313X.2005.02354.x, 1382282, 15773855
    • Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Kim VN, Chua NH, Park CM. microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 2005, 42(1):84-94. 10.1111/j.1365-313X.2005.02354.x, 1382282, 15773855.
    • (2005) Plant J , vol.42 , Issue.1 , pp. 84-94
    • Kim, J.1    Jung, J.H.2    Reyes, J.L.3    Kim, Y.S.4    Kim, S.Y.5    Chung, K.S.6    Kim, J.A.7    Lee, M.8    Lee, Y.9    Kim, V.N.10    Chua, N.H.11    Park, C.M.12
  • 53
    • 4243111895 scopus 로고    scopus 로고
    • Modulation of floral development by a gibberellin-regulated microRNA
    • 10.1242/dev.01206, 15226253
    • Achard P, Herr A, Baulcombe DC, Harberd NP. Modulation of floral development by a gibberellin-regulated microRNA. Development 2004, 131(14):3357-3365. 10.1242/dev.01206, 15226253.
    • (2004) Development , vol.131 , Issue.14 , pp. 3357-3365
    • Achard, P.1    Herr, A.2    Baulcombe, D.C.3    Harberd, N.P.4
  • 54
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • 10.1105/tpc.105.031716, 1091760, 15829600
    • Mallory AC, Bartel DP, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 2005, 17(5):1360-1375. 10.1105/tpc.105.031716, 1091760, 15829600.
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 55
    • 33748769519 scopus 로고    scopus 로고
    • Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice
    • 10.1104/pp.106.084475, 1557610, 16861571
    • Xie KB, Wu CQ, Xiong LZ. Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiol 2006, 142(1):280-293. 10.1104/pp.106.084475, 1557610, 16861571.
    • (2006) Plant Physiol , vol.142 , Issue.1 , pp. 280-293
    • Xie, K.B.1    Wu, C.Q.2    Xiong, L.Z.3
  • 56
    • 16244398080 scopus 로고    scopus 로고
    • Specific effects of microRNAs on the plant transcriptome
    • 10.1016/j.devcel.2005.01.018, 15809034
    • Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D. Specific effects of microRNAs on the plant transcriptome. Dev Cell 2005, 8(4):517-527. 10.1016/j.devcel.2005.01.018, 15809034.
    • (2005) Dev Cell , vol.8 , Issue.4 , pp. 517-527
    • Schwab, R.1    Palatnik, J.F.2    Riester, M.3    Schommer, C.4    Schmid, M.5    Weigel, D.6
  • 57
    • 0031214215 scopus 로고    scopus 로고
    • Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition
    • 10.1046/j.1365-313X.1997.12020367.x, 9301089
    • Cardon GH, Hohmann S, Nettesheim K, Saedler H, Huijser P. Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition. Plant J 1997, 12(2):367-377. 10.1046/j.1365-313X.1997.12020367.x, 9301089.
    • (1997) Plant J , vol.12 , Issue.2 , pp. 367-377
    • Cardon, G.H.1    Hohmann, S.2    Nettesheim, K.3    Saedler, H.4    Huijser, P.5
  • 58
    • 70450195786 scopus 로고    scopus 로고
    • GRAS-domain transcription factors that regulate plant development
    • 10.4161/psb.4.8.9176, 2801379, 19820314
    • Hirsch S, Oldroyd GE. GRAS-domain transcription factors that regulate plant development. Plant Signal Behav 2009, 4(8):698-700. 10.4161/psb.4.8.9176, 2801379, 19820314.
    • (2009) Plant Signal Behav , vol.4 , Issue.8 , pp. 698-700
    • Hirsch, S.1    Oldroyd, G.E.2
  • 59
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
    • 10.1105/tpc.016238, 280575, 14555699
    • Aukerman MJ, Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 2003, 15(11):2730-2741. 10.1105/tpc.016238, 280575, 14555699.
    • (2003) Plant Cell , vol.15 , Issue.11 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 60
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • 10.1126/science.1088060, 12893888
    • Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004, 303(5666):2022-2025. 10.1126/science.1088060, 12893888.
    • (2004) Science , vol.303 , Issue.5666 , pp. 2022-2025
    • Chen, X.1
  • 61
    • 21544469418 scopus 로고    scopus 로고
    • MicroRNA172 downregulates glossy15 to promote vegetative phase change in maize
    • 10.1073/pnas.0503927102, 1166634, 15958531
    • Lauter N, Kampani A, Carlson S, Goebel M, Moose SP. microRNA172 downregulates glossy15 to promote vegetative phase change in maize. Proc Natl Acad Sci U S A 2005, 102(26):9412-9417. 10.1073/pnas.0503927102, 1166634, 15958531.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.26 , pp. 9412-9417
    • Lauter, N.1    Kampani, A.2    Carlson, S.3    Goebel, M.4    Moose, S.P.5
  • 62
    • 84960125795 scopus 로고    scopus 로고
    • Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
    • Zhou M, Gu L, Li P, Song X, Wei L, Chen Z, Cao X. Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica). Front Biol 2010, 5(1):67-90.
    • (2010) Front Biol , vol.5 , Issue.1 , pp. 67-90
    • Zhou, M.1    Gu, L.2    Li, P.3    Song, X.4    Wei, L.5    Chen, Z.6    Cao, X.7
  • 63
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bio assays with tobacco tissue cultures
    • Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 1962, 15(3):473-497.
    • (1962) Physiol Plant , vol.15 , Issue.3 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 64
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • 10.2144/000112010, 16235564
    • Shi R, Chiang VL. Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 2005, 39(4):519-525. 10.2144/000112010, 16235564.
    • (2005) Biotechniques , vol.39 , Issue.4 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 65
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • 10.1006/meth.2001.1262, 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25(4):402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


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