ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation

Plant Journal

Volumn 37, Issue 4, 2004, Pages 471-483

  Takase, Tomoyuki ^a,b   Nakazawa, Miki ^b   Ishikawa, Akie ^b   Kawashima, Mika ^b   Ichikawa, Takanari ^b   Takahashi, Naoki ^b,c   Shimada, Hiroaki ^c   Manabe, Katsushi ^a   Matsui, Minami ^b  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

^b RIKEN YOKOHAMA INSTITUTE   (Japan)

^c TOKYO UNIVERSITY OF SCIENCE   (Japan)

Author keywords

Arabidopsis; Auxin; GH3; Hypocotyl elongation; Light; Root elongation

Indexed keywords

DNA; GENES; PROTEINS;

AUXIN SIGNALING; MUTANTS;

PLANTS (BOTANY);

ARABIDOPSIS PROTEIN; DFL1 PROTEIN, ARABIDOPSIS; DFL2 PROTEIN, ARABIDOPSIS; INDOLEACETIC ACID DERIVATIVE; PHYTOHORMONE; YDK1 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; ARTICLE; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIGHT; METABOLISM; MULTIGENE FAMILY; PHENOTYPE; PLANT GROWTH; PLANT ROOT; RADIATION EXPOSURE; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; HYPOCOTYL; INDOLEACETIC ACIDS; LIGHT; MULTIGENE FAMILY; PHENOTYPE; PLANT GROWTH REGULATORS; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED;

ARABIDOPSIS; EMBRYOPHYTA; EUKARYOTA; INSERTION SEQUENCES;

EID: 1342311981     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01973.x     Document Type: Article

References (47)

1. Abel, S. and Theologis, A. (1996) Early genes and auxin action. Plant Physiol. 111, 9-17.
2. Aloni, R., Schwalm, K., Langhans, M. and Ullrich, C.I. (2003) Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta, 216, 841-853.
3. Bechtold, N., Ellis, J. and Pellertier, G. (1993) In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. Ser. III Sci. Vie, 316, 1194-1199.
4. Chory, J., Peto, C., Feinbaum, R., Pratt, L. and Ausubel, F. (1989) Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell, 58, 991-999.
5. Colon-Carmona, A., Chen, D.L., Yeh, K.C. and Abel, S. (2000) Aux/IAA proteins are phosphorylated by phytochrome in vitro. Plant Physiol. 124, 1728-1738.
6. Deng, X.W., Caspar, T. and Quail, P.H. (1991) cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes Dev. 5, 1172-1182.
7. Estelle, M. and Klee, H.J. (1994) Auxin and cytokinin in Arabidopsis. In Arabidopsis (Meyeowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor: Cold Spring Harbor Laboratory Press, pp. 555-578.
8. Fu, X. and Harberd, N.P. (2003) Auxin promotes Arabidopsis root growth by modulating gibberellin response. Nature, 421, 740-743.
9. Hagen, G. and Guilfoyle, T.J. (1985) Rapid induction of selective transcription by auxins. Mol. Cell. Biol. 5, 1197-1203.
10. Hagen, G. and Guilfoyle, T. (2002) Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol. Biol. 49, 373-385.
11. Hagen, G., Kleinschmidt, A.J. and Guilfoyle, T.J. (1984) Auxin-regulated gene expression in intact soybean hypocotyl and excised hypocotyl sections. Planta, 162, 147-153.
12. Harper, R.M., Stowe-Evans, E.L., Luesse, D.R., Muto, H., Tatematsu, K., Watahiki, M.K., Yamamoto, K. and Liscum, E. (2000) The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell, 12, 757-770.
13. Hobbie, L.J. (1998) Auxin: molecular genetic approaches in Arabidopsis. Plant Physiol. Biochem. 36, 91-102.
14. Hsieh, H.L., Okamoto, H., Wang, M., Ang, L.H., Matsui, M., Goodman, H. and Deng, X.W. (2000) FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development. Genes Dev. 14, 1958-1970.
15. Kim, J., Harter, K. and Theologis, A. (1997) Protein-protein interactions among the Aux/IAA proteins. Proc. Natl. Acad. Sci. USA, 94, 11786-11791.
16. Kim, B.C., Soh, M.S., Hong, S.H., Furuya, M. and Nam, H.G. (1998) Photomorphogenic development of the Arabidopsis shy2-1D mutation and its interaction with phytochromes in darkness. Plant J. 15, 61-68.
17. Klimyuk, V.I., Carroll, B.J., Thomas, C.M. and Jones, D.G. (1993) Alkali treatment for rapid preparation of plant material for reliable PCR analysis. Plant J. 3, 493-494.
18. Leyser, H.M., Pickett, F.B., Dharmasiri, S. and Estelle, M. (1996) Mutations in the AXR3 gene of Arabidopsis result in altered auxin response including ectopic expression from the SAUR-AC1 promoter. Plant J. 10, 403-413.
19. Li, H., Shen, J.J., Zheng, Z.L., Lin, Y. and Yang, Z. (2001) The Rop GTPase switch controls multiple developmental processes in Arabidopsis. Plant Physiol. 126, 670-684.
20. Liscum, E. and Reed, J.W. (2002) Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol. Biol. 49, 387-400.
21. Nagpal, P., Walker, L.M., Young, J.C., Sonawala, A., Timpte, C., Estelle, M. and Reed, J.W. (2000) AXR2 encodes a member of the Aux/IAA protein family. Plant Physiol. 123, 563-573.
22. Nakazawa, M., Yabe, N., Ichikawa, T., Yamamoto, Y.Y., Yoshizumi, T., Hasunuma, K. and Matsui, M. (2001) DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. Plant J. 25, 213-221.
23. Nakazawa, M., Ichikawa, T., Ishikawa, A., Kobayashi, H., Tsuhara, Y., Kawashima, M., Suzuki, K., Muto, S. and Matsui, M. (2003) Activation tagging, a novel tool to dissect the function of a gene family. Plant J. 34, 741-750.
24. Newman, T.C., Ohme-Takagi, M., Taylor, C.B. and Green, P.J. (1993) DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco. Plant Cell, 5, 701-714.
25. Normanly, J. (1997) Auxin metabolism. Physiol. Plant. 100, 431-442.
26. Quellet, F., Overvoorde, P.J. and Theologis, A. (2001) IAA17/AXR3: biochemical insight into an auxin mutant phenotype. Plant Cell, 13, 829-841.
27. Parinov, S., Sevugan, M., Ye, D., Yang, W.C., Kumaran, M. and Sundaresan, V. (1999) Analysis of flanking sequences from Dissociation insertion lines: a database for reverse genetics in Arabidopsis. Plant Cell, 11, 2263-2270.
28. Reed, J.W., Elumalai, R.P. and Chory, J. (1998) Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. Genetics, 148, 1295-1310.
29. Roberts, J.A., Elliott, K.A. and Gonzalez-Carranza, Z.H. (2002) Abscission, dehiscence, and other cell separation processes. Annu. Rev. Plant Biol. 53, 131-158.
30. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
31. Sitbon, F. and Perrot-Rechenmann, C. (1997) Expression of auxin-regulated genes. Physiol. Plant. 100, 443-455.
32. Staswick, P.E., Tiryaki, I. and Rowe, M.L. (2002) Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acid in an assay for adenylation. Plant Cell, 14, 1405-1415.
33. Stowe-Evans, E.L., Harper, R.M., Motchoulski, A.V. and Liscum, E. (1998) NPH4, a conditional modulator of auxin-dependent differential growth responses in Arabidopsis. Plant Physiol. 118, 1265-1275.
34. Stowe-Evans, E.L., Luesse, D.R. and Liscum, E. (2001) The enhancement of phototropin-induced phototropic curvature in Arabidopsis occurs via a photoreversible phytochrome A-dependent modulation of auxin responsiveness. Plant Physiol. 126, 826-834.
35. Sullivan, M.L. and Green, P.J. (1996) Mutational analysis of the DST element in tobacco cells and transgenic plants: identification of residues critical for mRNA instability. RNA, 2, 308-315.
36. Tanaka, S., Mochizuki, N. and Nagatani, A. (2002) Expression of the AtGH3a gene, an Arabidopsis homologue of the soybean GH3 gene, is regulated by phytochrome B. Plant Cell Physiol. 43, 281-289.
37. Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X. and Quail, P.H. (2001) Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl. Acad. Sci. USA, 98, 9437-9442.
38. Tian, Q. and Reed, J.W. (1999) Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. Development, 126, 711-721.
39. Tian, Q., Uhlir, N.J. and Reed, J.W. (2002) Arabidopsis SHY2/IAA3 inhibits auxin-regulated gene expression. Plant Cell, 14, 301-319.
40. Timpte, C., Wilson, A.K. and Estelle, M. (1994) The axr2-1 mutation of Arabidopsis thaliana is a gain-of-function mutation that disrupts an early step in auxin response. Genetics, 138, 1239-1249.
41. Tiwari, S.B., Hagen, G. and Guilfoyle, T. (2003) The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell, 15, 1-11.
42. Ulmasov, T., Hagen, G. and Guilfoyle, T.J. (1999) Activation and repression of transcription by auxin-response factors. Proc. Natl. Acad. Sci. USA, 96, 5844-5849.
43. Ulmasov, T., Murfett, J., Hagen, G. and Guilfoyle, T.J. (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell, 9, 1963-1971.
44. Valvekens, D., Van Montagu, M. and Van Lijsebettens, M. (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc. Natl. Acad. Sci. USA, 85, 5536-5540.
45. Watahiki, M.K. and Yamamoto, K. (1997) The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf. Plant Physiol. 115, 419-426.
46. Wright, R.M., Hagen, G. and Guilfoyle, T. (1987) An auxin-induced polypeptide in dicotyledonous plants. Plant Mol. Biol. 9, 625-635.
47. Yoshizumi, T., Nagata, N., Shimada, H. and Matsui, M. (1999) An Arabidopsis cell cycle-dependent kinase-related gene, CDC2b, plays a role in regulating seedling growth in darkness. Plant Cell, 11, 1883-1895.