WEGO: A web tool for plotting GO annotations

Nucleic Acids Research

Volumn 34, Issue WEB. SERV. ISS., 2006, Pages

  Ye, Jia ^a   Fang, Lin ^b   Zheng, Hongkun ^b   Zhang, Yong ^b,c   Chen, Jie ^b   Zhang, Zengjin ^b   Wang, Jing ^b   Li, Shengting ^b,d   Li, Ruiqiang ^b,e   Bolund, Lars ^b,d   Wang, Jun ^a,b,c,d,e  

^a ZHEJIANG UNIVERSITY   (China)

^b BGI SHENZHEN   (China)

^c PEKING UNIVERSITY   (China)

^d AARHUS UNIVERSITY   (Denmark)

^e UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; CLASSIFICATION; COMPARATIVE GENE MAPPING; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; GENETIC ANALYSIS; HISTOGRAM; INSECT GENETICS; INTERNET; NOMENCLATURE; NONHUMAN; PLANT GENETICS; PRIORITY JOURNAL; RICE; SILKWORM; GENE; GENOMICS; LINGUISTICS;

BOMBYX MORI;

GENES; GENOMICS; INTERNET; SOFTWARE; USER-COMPUTER INTERFACE; VOCABULARY, CONTROLLED;

EID: 33747846582     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl031     Document Type: Article

References (18)

1. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet., 25, 25-29.
2. The Gene Ontology Consortium. (2001), Creating the gene ontology resource: design and implementation. Genome Res., 111425-1433.
3. Harris,M.A., Clark,J., Ireland,A., Lomax,J., Ashburner,M., Foulger,R., Eilbeck,K., Lewis,S., Marshall,B., Mungall,C. et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
4. Khan,S., Situ,G., Decker,K. and Schmidt,C.J. (2003) GoFigure: automated Gene Ontology annotation. Bioinformatics, 19, 2484-2485.
5. Martin,D.M., Berriman,M. and Barton,G.J. (2004) GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinformatics, 5, 178.
6. Hennig,S., Groth,D. and Lehrach,H. (2003) Automated Gene Ontology annotation for anonymous sequence data. Nucleic Acids Res., 31, 3712-3715.
7. Zehetner,G. (2003) OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Res., 31, 3799-3803.
8. Groth,D., Lehrach,H. and Hennig,S. (2004) GOblet: a platform for Gene Ontology annotation of anonymous sequence data. Nucleic Acids Res., 32, W313-W317.
9. Young,A., Whitehouse,N., Cho,J. and Shaw,C. (2005) OntologyTraverser: an R package for GO analysis. Bioinformatics, 21, 275-276.
10. Boyle,E.I., Weng,S., Gollub,J., Jin,H., Botstein,D., Cherry,J.M. and Sherlock,G. (2004) GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics, 20, 3710-3715.
11. Martin,D., Brun,C., Remy,E., Mouren,P., Thieffry,D. and Jacq,B. (2004) GOToolBox: functional analysis of gene datasets based on Gene Ontology. Genome Biol., 5, R101.
12. Zhang,B., Schmoyer,D., Kirov,S. and Snoddy,J. (2004) GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontologyhierarchies. BMC Bioinformatics, 5, 16.
13. Lee,J.S., Katari,G. and Sachidanandam,R. (2005) GObar: a gene ontology based analysis and visualization tool for gene sets. BMC Bioinformatics, 6, 189.
14. Yu,J., Hu,S., Wang,J., Wong,G.K., Li,S., Liu,B., Deng,Y., Dai,L., Zhou,Y., Zhang,X. et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 296, 79-92.
15. Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W., Hu,S., Zeng,C. et al. (2005) The Genomes of Oryza sativa: a history of duplications. PLoS Biol., 3, e38.
16. Xia,Q., Zhou,Z., Lu,C., Cheng,D., Dai,F., Li,B., Zhao,P., Zha,X., Cheng,T., Chai,C. et al. (2004) A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science, 306, 1937-1940.
17. Camon,E., Magrane,M., Barrell,D., Binns,D., Fleischmann,W., Kersey,P., Mulder,N., Oinn,T., Maslen,J., Cox,A. et al. (2003) The Gene Ontology annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res., 13, 662-672.
18. Camon,E., Magrane,M., Barrell,D., Lee,V., Dimmer,E., Maslen,J., Binns,D., Harte,N., Lopez,R. and Apweiler,R. (2004) The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res., 32, D262-D266.