Mapping of QTLs controlling root shape and red pigmentation in radish, Raphanus sativus L.

Breeding Science

Volumn 58, Issue 1, 2008, Pages 55-61

  Tsuro, Masato ^a   Suwabe, Keita ^b,c   Kubo, Nakao ^d,e   Matsumoto, Satoru ^b   Hirai, Masashi ^d,e  

^a MEIJO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^c TOHOKU UNIVERSITY   (Japan)

^d KYOTO PREFECTURAL UNIVERSITY   (Japan)

^e Kyoto Prefectural Institute of Agricultural Biotechnology   (Japan)

Author keywords

Linkage map; QTLs; Raphanus sativus; Red pigmentation; Root shape

Indexed keywords

BRASSICA; RAPHANUS; RAPHANUS SATIVUS;

EID: 42049102012     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.55     Document Type: Article

References (32)

1. Ajisaka, H., Y. Kuginuki, S. Yui, S. Enomoto and M. Hirai (2001) Identification and mapping of a quantitative trait locus controlling extreme late bolting in Chinese cabbage (Brassica rapa L. ssp. pekinensis syn. campestris L.) using bulked segregant analysis: A QTL controlling extreme late bolting in Chinese cabbage. Euphytica 118: 75-81.
2. Aoba, T. (1966) Studies on inheritance of root color in turnip (I). J. Yamagata Agr. Forest. Soc. 23: 13-19.
3. Aoba, T. (1968) Studies on inheritance of root color in turnip (II). J. Yamagata Agr. Forest. Soc. 25: 5-8.
4. Bett, K.E. and D.J. Lydiate (2003) Genetic analysis and genome mapping in Raphanus. Genome 46: 423-430.
5. Bradeen, J.M., J.E. Staub, C. Wye, R. Antonise and J. Peleman (2001) Towards an expanded and integrated linkage map of cucumber (Cucumis sativus L.). Genome 44: 111-119.
6. Choi, H.-K., J.-H. Mun, D.-J. Kim, H. Zhu, J.-M. Baek, J. Mudge, B. Roe, N. Ellis, J. Doyle, G.B. Kiss, N.D. Young and D.R. Cook (2004) Estimating genome conservation between crop and model legume species. Proc. Natl. Acad. Sci. USA 101: 15289-15294.
7. Hirai, M., T. Harada, N. Kubo, M. Tsukada, K. Suwabe and S. Matsumoto (2004) A novel locus for clubroot resistance in Brassica rapa and its linkage markers. Theor. Appl. Genet. 108: 639-643.
8. Iwata, H., S. Niikura, S. Matsuura, Y. Takano and Y. Ukai (1998) Evaluation of variation of root shape of Japanese radish (Raphanus sativus L.) based on image analysis using elliptic Fourier descriptors. Euphytica 102: 143-149.
9. Kaneko, Y., C. Kimizuka-Takagi, S.W. Bang and Y. Matsuzawa (2007) Radish. In "Genome mapping and molecular breeding in plants, Vol. 5 Vegetables" Kole, C. (ed.), Springer-Verlag, Berlin, Heidelberg. p. 141-160.
10. Kitamura, S. (1958) Cultivars of radish and their change. In "Japanese radish" Nishiyama, I. (ed.), Japan Society for the Promotion of Science, Tokyo. p. 1-19 (in Japanese).
11. Kole, C., R. Teutonico, A. Mengistu, P.H. Williams and T.C. Osborn (1996) Molecular mapping of a locus controlling resistance to Albugo candida in Brassica rapa. Phytopathology 86: 367-369.
12. Kosambi, D.D. (1944) The estimation of map distances from recombination values. Ann. Eugenics 12: 172-175.
13. Marwede, V., M.K. Gül, H.C. Becker and W. Ecke (2005) Mapping of QTL controlling tocopherol content in winter oilseed rape. Plant Breed. 124: 20-26.
14. Mongkolporn, O., G.P. Kadkol, E.C.K. Pang and P.W.J. Taylor (2003) Identification of RAPD markers linked to recessive genes conferring siliqua shatter resistance in Brassica rapa. Plant Breed. 122: 479-484.
15. Moore, G., K.M. Devos, Z. Wang and M.D. Gale (1995) Cereal genome evolution: grasses, line up and form a circle. Curr. Biol. 5: 737-739.
16. Murayama, S., T. Habuchi, H. Yamagishi and T. Terachi (2003) Identification of a sequence-tagged site (STS) marker linked to a restorer gene for Ogura cytoplasmic male sterility in radish (Raphanus sativus L.) by non-radioactive AFLP analysis. Euphytica 129: 61-68.
17. Murray, M.G. and W.F. Thompson (1980) Rapid isolation of high molecular weight plant DNA. Nucleic. Acids Res. 8: 4321-4326.
18. Niikura, S. and S. Matsuura (1998) Identification of self-incompatibility alleles (S) by PCR-RFLP in radish (Raphanus sativus L.). Euphytica 102: 379-384.
19. Paran, I. and D. Zamir (2003) Quantitative traits in plants: beyond the QTL. Trends Genet. 19: 303-306.
20. Peleman, J.D. and J.R. van der Voort (2003) Breeding by design. Trends Plant Sci. 8: 330-334.
21. Schranz, M.E., M.A. Lysak and T. Mitchell-Olds (2006) The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci. 11: 535-542.
22. Suwabe, K., H. Iketani, T. Nunome, T. Kage and M. Hirai (2002) Isolation and characterization of microsatellites in Brassica rapa L. Theor. Appl. Genet. 104: 1092-1098.
23. Suwabe, K., H. Iketani, T. Nunome, A. Ohyama, M. Hirai and H. Fukuoka (2004a) Characteristics of microsatellites in Brassica rapa genome and their potential utilization for comparative genomics in Cruciferae. Breed. Sci. 54: 85-90.
24. Suwabe, K., H. Tsukazaki, H. Ikentani, K. Hatakeyama, M. Fujimura, T. Nunome, H. Fukuoka, S. Matsumoto and M. Hirai (2004b) Identification of two loci for resistance to clubroot (Plasmodiophora brassicae Woronin). Theor. Appl. Genet. 107: 997-1002.
25. Suwabe, K., H. Tsukazaki, H. Ikentani, K. Hatakeyama, M. Konodo, M. Fujimura, T. Nunome, H. Fukuoka, M. Hirai and S. Matsumoto (2006) Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance. Genetics 173: 309-319.
26. Tanhuanpää, P.K., J.P. Vilkki and H.J. Vikki (1996) Mapping a QTL for oleic acid concentration in spring turnip rape (Brassica rapa ssp. oleifera). Theor. Appl. Genet. 92: 952-956.
27. Tanksley, S.D., M.W. Ganal, J.P. Prince, M.C. de Vicente, M.W. Bonierbale, P. Broun, T.M. Fulton, J.J. Giovannoni, S. Grandillo, G.B. Martin, R. Messeguer, J.C. Miller, L. Miller, A.H. Paterson, O. Pineda, M.S. Röder, R.A. Wing, W. Wu and N.D. Young (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132: 1141-1160.
28. Tsuro, M., K. Suwabe, N. Kubo, S. Matsumoto and M. Hirai (2005) Construction of a molecular linkage map of radish (Raphanus sativus L.), based on AFLP and Brassica-SSR markers. Breed. Sci. 55: 107-111.
29. Van Ooijen, J.W., M.P. Boer, R.C. Jansen and C. Maliepaard (2002) MapQTL4.0, Software for the calculation of QTL position on genetic maps. Plant Res. Internatl., Wageningen, The Netherlands.
30. Van Ooijen, J.W. and R.E. Voorrips (2001) JoinMap3.0, Software for the calculation of genetic linkage maps. Plant Res. Internatl., Wageningen, The Netherlands.
31. Vos, P., R. Hogers, M. Bleeker, M. Reijians, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper and M. Zabeau (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
32. Zini, E., F. Biasioli, F. Gasperi, D. Mott, E. Aprea, T.D. Märk, A. Patocchi, C. Gesseler and M. Komjanc (2005) QTL mapping of volatile compounds in ripe apples detected by proton transfer reaction-mass spectrometry. Euphytica 145: 269-279.