-
1
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
Finley, D. (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu. Rev. Biochem. 78, 477-513
-
(2009)
Annu. Rev. Biochem
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
2
-
-
84952639230
-
Gates, channels, and switches: Elements of the proteasome machine
-
Finley, D., Chen, X., and Walters, K. J. (2016) Gates, channels, and switches: elements of the proteasome machine. Trends Biochem. Sci. 41, 77-93
-
(2016)
Trends Biochem. Sci
, vol.41
, pp. 77-93
-
-
Finley, D.1
Chen, X.2
Walters, K.J.3
-
4
-
-
84861783400
-
Ubiquitin-binding proteins: Decoders of ubiquitin-mediated cellular functions
-
Husnjak, K., and Dikic, I. (2012) Ubiquitin-binding proteins: decoders of ubiquitin-mediated cellular functions. Annu. Rev. Biochem. 81, 291-322
-
(2012)
Annu. Rev. Biochem
, vol.81
, pp. 291-322
-
-
Husnjak, K.1
Dikic, I.2
-
5
-
-
0034602845
-
Recognition of the polyubiquitin proteolytic signal
-
Thrower, J. S., Hoffman, L., Rechsteiner, M., and Pickart, C. M. (2000) Recognition of the polyubiquitin proteolytic signal. EMBO J. 19, 94-102
-
(2000)
EMBO J
, vol.19
, pp. 94-102
-
-
Thrower, J.S.1
Hoffman, L.2
Rechsteiner, M.3
Pickart, C.M.4
-
6
-
-
0031603760
-
A function for monoubiquitination in the internalization of aGprotein-coupled receptor
-
Terrell, J., Shih, S., Dunn, R., and Hicke, L. (1998) A function for monoubiquitination in the internalization of aGprotein-coupled receptor. Mol. Cell 1, 193-202
-
(1998)
Mol. Cell
, vol.1
, pp. 193-202
-
-
Terrell, J.1
Shih, S.2
Dunn, R.3
Hicke, L.4
-
7
-
-
0030054178
-
Ubiquitination of a yeast plasma membrane receptor signals its ligand-stimulated endocytosis
-
Hicke, L., and Riezman, H. (1996) Ubiquitination of a yeast plasma membrane receptor signals its ligand-stimulated endocytosis. Cell 84, 277-287
-
(1996)
Cell
, vol.84
, pp. 277-287
-
-
Hicke, L.1
Riezman, H.2
-
8
-
-
0030881952
-
Ubiquitin lys63 is involved in ubiquitination of a yeast plasma membrane protein
-
Galan, J. M., and Haguenauer-Tsapis, R. (1997) Ubiquitin lys63 is involved in ubiquitination of a yeast plasma membrane protein. EMBO J. 16, 5847-5854
-
(1997)
EMBO J
, vol.16
, pp. 5847-5854
-
-
Galan, J.M.1
Haguenauer-Tsapis, R.2
-
9
-
-
84876886904
-
Regulation of DNA damage responses by ubiquitin and SUMO
-
Jackson, S. P., and Durocher, D. (2013) Regulation of DNA damage responses by ubiquitin and SUMO. Mol. Cell 49, 795-807
-
(2013)
Mol. Cell
, vol.49
, pp. 795-807
-
-
Jackson, S.P.1
Durocher, D.2
-
10
-
-
33745742269
-
Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology
-
Kirkpatrick, D. S., Hathaway, N. A., Hanna, J., Elsasser, S., Rush, J., Finley, D., King, R. W., and Gygi, S. P. (2006) Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology. Nat. Cell Biol. 8, 700-710
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 700-710
-
-
Kirkpatrick, D.S.1
Hathaway, N.A.2
Hanna, J.3
Elsasser, S.4
Rush, J.5
Finley, D.6
King, R.W.7
Gygi, S.P.8
-
11
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu, P., Duong, D. M., Seyfried, N. T., Cheng, D., Xie, Y., Robert, J., Rush, J., Hochstrasser, M., Finley, D., and Peng, J. (2009) Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137, 133-145
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
Duong, D.M.2
Seyfried, N.T.3
Cheng, D.4
Xie, Y.5
Robert, J.6
Rush, J.7
Hochstrasser, M.8
Finley, D.9
Peng, J.10
-
12
-
-
84862776836
-
APC/C-mediated multiple monoubiquitylation provides an alternative degradation signal for cyclin B1
-
Dimova, N. V., Hathaway, N. A., Lee, B.-H., Kirkpatrick, D. S., Berkowitz, M. L., Gygi, S. P., Finley, D., and King, R. W. (2012) APC/C-mediated multiple monoubiquitylation provides an alternative degradation signal for cyclin B1. Nat. Cell Biol. 14, 168-176
-
(2012)
Nat. Cell Biol
, vol.14
, pp. 168-176
-
-
Dimova, N.V.1
Hathaway, N.A.2
Lee, B.-H.3
Kirkpatrick, D.S.4
Berkowitz, M.L.5
Gygi, S.P.6
Finley, D.7
King, R.W.8
-
13
-
-
60849126138
-
Modification by single ubiquitin moieties rather than polyubiquitination is sufficient for proteasomal processing of the p105 NF-κB precursor
-
Kravtsova-Ivantsiv, Y., Cohen, S., and Ciechanover, A. (2009) Modification by single ubiquitin moieties rather than polyubiquitination is sufficient for proteasomal processing of the p105 NF-κB precursor. Mol. Cell 33, 496-504
-
(2009)
Mol. Cell
, vol.33
, pp. 496-504
-
-
Kravtsova-Ivantsiv, Y.1
Cohen, S.2
Ciechanover, A.3
-
14
-
-
84927535922
-
Substrate degradation by the proteasome: A single-molecule kinetic analysis
-
Lu, Y., Lee, B.-H., King, R. W., Finley, D., and Kirschner, M. W. (2015) Substrate degradation by the proteasome: a single-molecule kinetic analysis. Science 348, 1250834-1250834
-
(2015)
Science
, vol.348
, pp. 1250834
-
-
Lu, Y.1
Lee, B.-H.2
King, R.W.3
Finley, D.4
Kirschner, M.W.5
-
15
-
-
67749086824
-
Ubiquitin degradation with its substrate, or as a monomer in a ubiquitinationindependent mode, provides clues to proteasome regulation
-
Shabek, N., Herman-Bachinsky, Y., and Ciechanover, A. (2009) Ubiquitin degradation with its substrate, or as a monomer in a ubiquitinationindependent mode, provides clues to proteasome regulation. Proc. Natl. Acad. Sci. U.S.A. 106, 11907-11912
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 11907-11912
-
-
Shabek, N.1
Herman-Bachinsky, Y.2
Ciechanover, A.3
-
16
-
-
0030028574
-
Novel multiubiquitin chain linkages catalyzed by the conjugating enzymes E2EPF and RAD6 are recognized by 26 S proteasome subunit 5
-
Baboshina, O. V., and Haas, A. L. (1996) Novel multiubiquitin chain linkages catalyzed by the conjugating enzymes E2EPF and RAD6 are recognized by 26 S proteasome subunit 5. J. Biol. Chem. 271, 2823-2831
-
(1996)
J. Biol. Chem
, vol.271
, pp. 2823-2831
-
-
Baboshina, O.V.1
Haas, A.L.2
-
17
-
-
0035958926
-
In vitro assembly and recognition of Lys-63 polyubiquitin chains
-
Hofmann, R. M., and Pickart, C. M. (2001) In vitro assembly and recognition of Lys-63 polyubiquitin chains. J. Biol. Chem. 276, 27936-27943
-
(2001)
J. Biol. Chem
, vol.276
, pp. 27936-27943
-
-
Hofmann, R.M.1
Pickart, C.M.2
-
18
-
-
60549107173
-
Lysine 63-linked polyubiquitin chain may serve as a targeting signal for the 26S proteasome
-
Saeki, Y., Kudo, T., Sone, T., Kikuchi, Y., Yokosawa, H., Toh-e, A., and Tanaka, K. (2009) Lysine 63-linked polyubiquitin chain may serve as a targeting signal for the 26S proteasome. EMBO J. 28, 359-371
-
(2009)
EMBO J
, vol.28
, pp. 359-371
-
-
Saeki, Y.1
Kudo, T.2
Sone, T.3
Kikuchi, Y.4
Yokosawa, H.5
Toh-E, A.6
Tanaka, K.7
-
19
-
-
84875231510
-
Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes?
-
Nathan, J. A., Kim, H. T., Ting, L., Gygi, S. P., and Goldberg, A. L. (2013) Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? EMBO J. 32, 552-565
-
(2013)
EMBO J
, vol.32
, pp. 552-565
-
-
Nathan, J.A.1
Kim, H.T.2
Ting, L.3
Gygi, S.P.4
Goldberg, A.L.5
-
20
-
-
72149130935
-
The lysine 48 and lysine 63 ubiquitin conjugates are processed differently by the 26 S proteasome
-
Jacobson, A. D., Zhang, N.-Y., Xu, P., Han, K.-J., Noone, S., Peng, J., and Liu, C.-W. (2009) The lysine 48 and lysine 63 ubiquitin conjugates are processed differently by the 26 S proteasome. J. Biol. Chem. 284, 35485-35494
-
(2009)
J. Biol. Chem
, vol.284
, pp. 35485-35494
-
-
Jacobson, A.D.1
Zhang, N.-Y.2
Xu, P.3
Han, K.-J.4
Noone, S.5
Peng, J.6
Liu, C.-W.7
-
21
-
-
4344559454
-
An unstructured initiation site is required for efficient proteasome-mediated degradation
-
Prakash, S., Tian, L., Ratliff, K. S., Lehotzky, R. E., and Matouschek, A. (2004) An unstructured initiation site is required for efficient proteasome-mediated degradation. Nat. Struct. Mol. Biol. 11, 830-837
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 830-837
-
-
Prakash, S.1
Tian, L.2
Ratliff, K.S.3
Lehotzky, R.E.4
Matouschek, A.5
-
22
-
-
33846216003
-
Proteasome substrate degradation requires association plus extended peptide
-
Takeuchi, J., Chen, H., and Coffino, P. (2007) Proteasome substrate degradation requires association plus extended peptide. EMBO J. 26, 123-131
-
(2007)
EMBO J
, vol.26
, pp. 123-131
-
-
Takeuchi, J.1
Chen, H.2
Coffino, P.3
-
23
-
-
84907406045
-
Intrinsically disordered segments affect protein half-life in the cell and during evolution
-
van der Lee, R., Lang, B., Kruse, K., Gsponer, J., Sánchez de Groot, N., Huynen, M. A., Matouschek, A., Fuxreiter, M., and Babu, M. M. (2014) Intrinsically disordered segments affect protein half-life in the cell and during evolution. Cell Rep. 8, 1832-1844
-
(2014)
Cell Rep
, vol.8
, pp. 1832-1844
-
-
Van Der Lee, R.1
Lang, B.2
Kruse, K.3
Gsponer, J.4
Sánchez De Groot, N.5
Huynen, M.A.6
Matouschek, A.7
Fuxreiter, M.8
Babu, M.M.9
-
24
-
-
77951199144
-
Degradation of some polyubiquitinated proteins requires an intrinsic proteasomal binding element in the substrates
-
Zhao, M., Zhang, N.-Y., Zurawel, A., Hansen, K. C., and Liu, C.-W. (2010) Degradation of some polyubiquitinated proteins requires an intrinsic proteasomal binding element in the substrates. J. Biol. Chem. 285, 4771-4780
-
(2010)
J. Biol. Chem
, vol.285
, pp. 4771-4780
-
-
Zhao, M.1
Zhang, N.-Y.2
Zurawel, A.3
Hansen, K.C.4
Liu, C.-W.5
-
25
-
-
57749102552
-
Substrate selection by the proteasome during degradation of protein complexes
-
Prakash, S., Inobe, T., Hatch, A. J., and Matouschek, A. (2009) Substrate selection by the proteasome during degradation of protein complexes. Nat. Chem. Biol. 5, 29-36
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 29-36
-
-
Prakash, S.1
Inobe, T.2
Hatch, A.J.3
Matouschek, A.4
-
26
-
-
79951850741
-
Defining the geometry of the two-component proteasome degron
-
Inobe, T., Fishbain, S., Prakash, S., and Matouschek, A. (2011) Defining the geometry of the two-component proteasome degron. Nat. Chem. Biol. 7, 161-167
-
(2011)
Nat. Chem. Biol
, vol.7
, pp. 161-167
-
-
Inobe, T.1
Fishbain, S.2
Prakash, S.3
Matouschek, A.4
-
27
-
-
84878270699
-
Rad23 escapes degradation because it lacks a proteasome initiation region
-
Fishbain, S., Prakash, S., Herrig, A., Elsasser, S., and Matouschek, A. (2011) Rad23 escapes degradation because it lacks a proteasome initiation region. Nat. Commun. 2, 192
-
(2011)
Nat. Commun
, vol.2
, pp. 192
-
-
Fishbain, S.1
Prakash, S.2
Herrig, A.3
Elsasser, S.4
Matouschek, A.5
-
28
-
-
84924125611
-
Sequence composition of disordered regions fine-tunes protein half-life
-
Fishbain, S., Inobe, T., Israeli, E., Chavali, S., Yu, H., Kago, G., Babu, M. M., and Matouschek, A. (2015) Sequence composition of disordered regions fine-tunes protein half-life. Nat. Struct. Mol. Biol. 22, 214-221
-
(2015)
Nat. Struct. Mol. Biol
, vol.22
, pp. 214-221
-
-
Fishbain, S.1
Inobe, T.2
Israeli, E.3
Chavali, S.4
Yu, H.5
Kago, G.6
Babu, M.M.7
Matouschek, A.8
-
29
-
-
84954288558
-
Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system
-
Guharoy, M., Bhowmick, P., Sallam, M., and Tompa, P. (2016) Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system. Nat. Commun. 7, 10239
-
(2016)
Nat. Commun
, vol.7
, pp. 10239
-
-
Guharoy, M.1
Bhowmick, P.2
Sallam, M.3
Tompa, P.4
-
30
-
-
0035977095
-
Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone
-
Rape, M., Hoppe, T., Gorr, I., Kalocay, M., Richly, H., and Jentsch, S. (2001) Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone. Cell 107, 667-677
-
(2001)
Cell
, vol.107
, pp. 667-677
-
-
Rape, M.1
Hoppe, T.2
Gorr, I.3
Kalocay, M.4
Richly, H.5
Jentsch, S.6
-
31
-
-
11844263929
-
A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting
-
Richly, H., Rape, M., Braun, S., Rumpf, S., Hoege, C., and Jentsch, S. (2005) A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting. Cell 120, 73-84
-
(2005)
Cell
, vol.120
, pp. 73-84
-
-
Richly, H.1
Rape, M.2
Braun, S.3
Rumpf, S.4
Hoege, C.5
Jentsch, S.6
-
32
-
-
33750528166
-
Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of Nend rule and ubiquitin-fusion degradation pathway substrates in mammalian cells
-
Wójcik, C., Rowicka, M., Kudlicki, A., Nowis, D., McConnell, E., Kujawa, M., and DeMartino, G. N. (2006) Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of Nend rule and ubiquitin-fusion degradation pathway substrates in mammalian cells. Mol. Biol. Cell 17, 4606-4618
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 4606-4618
-
-
Wójcik, C.1
Rowicka, M.2
Kudlicki, A.3
Nowis, D.4
McConnell, E.5
Kujawa, M.6
DeMartino, G.N.7
-
33
-
-
70449524302
-
A conserved unfoldase activity for the p97 AAAATPase in proteasomal degradation
-
Beskow, A., Grimberg, K. B., Bott, L. C., Salomons, F. A., Dantuma, N. P., and Young, P. (2009) A conserved unfoldase activity for the p97 AAAATPase in proteasomal degradation. J. Mol. Biol. 394, 732-746
-
(2009)
J. Mol. Biol
, vol.394
, pp. 732-746
-
-
Beskow, A.1
Grimberg, K.B.2
Bott, L.C.3
Salomons, F.A.4
Dantuma, N.P.5
Young, P.6
-
34
-
-
80053583606
-
A genome-wide screen identifies p97 as an essential regulator of DNA damage-dependent CDT1 destruction
-
Raman, M., Havens, C. G., Walter, J. C., and Harper, J. W. (2011) A genome-wide screen identifies p97 as an essential regulator of DNA damage-dependent CDT1 destruction. Mol. Cell 44, 72-84
-
(2011)
Mol. Cell
, vol.44
, pp. 72-84
-
-
Raman, M.1
Havens, C.G.2
Walter, J.C.3
Harper, J.W.4
-
35
-
-
78650733298
-
Cdc48/p97 mediates UV-dependent turnover of RNA Pol II
-
Verma, R., Oania, R., Fang, R., Smith, G. T., and Deshaies, R. J. (2011) Cdc48/p97 mediates UV-dependent turnover of RNA Pol II. Mol. Cell 41, 82-92
-
(2011)
Mol. Cell
, vol.41
, pp. 82-92
-
-
Verma, R.1
Oania, R.2
Fang, R.3
Smith, G.T.4
Deshaies, R.J.5
-
36
-
-
84865094127
-
+ proteolytic machine
-
Barthelme, D., and Sauer, R. T. (2012) Identification of the Cdc48·20S proteasome as an ancient AAA+ proteolytic machine. Science 337, 843-846
-
(2012)
Science
, vol.337
, pp. 843-846
-
-
Barthelme, D.1
Sauer, R.T.2
-
37
-
-
78149328427
-
Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae
-
Partow, S., Siewers, V., Bjørn, S., Nielsen, J., and Maury, J. (2010) Characterization of different promoters for designing a new expression vector in Saccharomyces cerevisiae. Yeast 27, 955-964
-
(2010)
Yeast
, vol.27
, pp. 955-964
-
-
Partow, S.1
Siewers, V.2
Bjørn, S.3
Nielsen, J.4
Maury, J.5
-
38
-
-
56149104588
-
A noncytotoxic DsRed variant for whole-cell labeling
-
Strack, R. L., Strongin, D. E., Bhattacharyya, D., Tao, W., Berman, A., Broxmeyer, H. E., Keenan, R. J., and Glick, B. S. (2008) A noncytotoxic DsRed variant for whole-cell labeling. Nat. Methods 5, 955-957
-
(2008)
Nat. Methods
, vol.5
, pp. 955-957
-
-
Strack, R.L.1
Strongin, D.E.2
Bhattacharyya, D.3
Tao, W.4
Berman, A.5
Broxmeyer, H.E.6
Keenan, R.J.7
Glick, B.S.8
-
39
-
-
84862002321
-
Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
-
Sharon, E., Kalma, Y., Sharp, A., Raveh-Sadka, T., Levo, M., Zeevi, D., Keren, L., Yakhini, Z., Weinberger, A., and Segal, E. (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat. Biotechnol. 30, 521-530
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 521-530
-
-
Sharon, E.1
Kalma, Y.2
Sharp, A.3
Raveh-Sadka, T.4
Levo, M.5
Zeevi, D.6
Keren, L.7
Yakhini, Z.8
Weinberger, A.9
Segal, E.10
-
40
-
-
55849136903
-
Global protein stability profiling in mammalian cells
-
Yen, H.-C., Xu, Q., Chou, D. M., Zhao, Z., and Elledge, S. J. (2008) Global protein stability profiling in mammalian cells. Science 322, 918-923
-
(2008)
Science
, vol.322
, pp. 918-923
-
-
Yen, H.-C.1
Xu, Q.2
Chou, D.M.3
Zhao, Z.4
Elledge, S.J.5
-
41
-
-
0036713383
-
Proteasome subunit Rpn1 binds ubiquitin-like protein domains
-
Elsasser, S., Gali, R. R., Schwickart, M., Larsen, C. N., Leggett, D. S., Müller, B., Feng, M. T., Tübing, F., Dittmar, G. A., and Finley, D. (2002) Proteasome subunit Rpn1 binds ubiquitin-like protein domains. Nat. Cell Biol. 4, 725-730
-
(2002)
Nat. Cell Biol
, vol.4
, pp. 725-730
-
-
Elsasser, S.1
Gali, R.R.2
Schwickart, M.3
Larsen, C.N.4
Leggett, D.S.5
Müller, B.6
Feng, M.T.7
Tübing, F.8
Dittmar, G.A.9
Finley, D.10
-
42
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
Husnjak, K., Elsasser, S., Zhang, N., Chen, X., Randles, L., Shi, Y., Hofmann, K., Walters, K. J., Finley, D., and Dikic, I. (2008) Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature 453, 481-488
-
(2008)
Nature
, vol.453
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
Hofmann, K.7
Walters, K.J.8
Finley, D.9
Dikic, I.10
-
43
-
-
84959019581
-
Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome
-
Shi, Y., Chen, X., Elsasser, S., Stocks, B. B., Tian, G., Lee, B.-H., Shi, Y., Zhang, N., de Poot, S. A., Tuebing, F., Sun, S., Vannoy, J., Tarasov, S. G., Engen, J. R., Finley, D., and Walters, K. J. (2016) Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome. Science 351, aad9421
-
(2016)
Science
, vol.351
, pp. aad9421
-
-
Shi, Y.1
Chen, X.2
Elsasser, S.3
Stocks, B.B.4
Tian, G.5
Lee, B.-H.6
Shi, Y.7
Zhang, N.8
De Poot, S.A.9
Tuebing, F.10
Sun, S.11
Vannoy, J.12
Tarasov, S.G.13
Engen, J.R.14
Finley, D.15
Walters, K.J.16
-
44
-
-
78149313167
-
Combined chemical and genetic approach to inhibit proteolysis by the proteasome
-
Collins, G. A., Gomez, T. A., Deshaies, R. J., and Tansey, W. P. (2010) Combined chemical and genetic approach to inhibit proteolysis by the proteasome. Yeast 27, 965-974
-
(2010)
Yeast
, vol.27
, pp. 965-974
-
-
Collins, G.A.1
Gomez, T.A.2
Deshaies, R.J.3
Tansey, W.P.4
-
45
-
-
33745728140
-
Comparative selectivity and specificity of the proteasome inhibitors BzLLLCOCHO, PS-341, and MG-132
-
Crawford, L. J., Walker, B., Ovaa, H., Chauhan, D., Anderson, K. C., Morris, T. C., and Irvine, A. E. (2006) Comparative selectivity and specificity of the proteasome inhibitors BzLLLCOCHO, PS-341, and MG-132. Cancer Res. 66, 6379-6386
-
(2006)
Cancer Res
, vol.66
, pp. 6379-6386
-
-
Crawford, L.J.1
Walker, B.2
Ovaa, H.3
Chauhan, D.4
Anderson, K.C.5
Morris, T.C.6
Irvine, A.E.7
-
46
-
-
0025967290
-
UBA 1: An essential yeast gene encoding ubiquitin-activating enzyme
-
McGrath, J. P., Jentsch, S., and Varshavsky, A. (1991) UBA 1: an essential yeast gene encoding ubiquitin-activating enzyme. EMBO J. 10, 227-236
-
(1991)
EMBO J
, vol.10
, pp. 227-236
-
-
McGrath, J.P.1
Jentsch, S.2
Varshavsky, A.3
-
47
-
-
34248180045
-
A conditional yeast E1 mutant blocks the ubiquitin-proteasome pathway and reveals a role for ubiquitin conjugates in targeting Rad23 to the proteasome
-
Ghaboosi, N., and Deshaies, R. J. (2007) A conditional yeast E1 mutant blocks the ubiquitin-proteasome pathway and reveals a role for ubiquitin conjugates in targeting Rad23 to the proteasome. Mol. Biol. Cell 18, 1953-1963
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 1953-1963
-
-
Ghaboosi, N.1
Deshaies, R.J.2
-
48
-
-
0024421482
-
Degradation of ornithine decarboxylase in reticulocyte lysate is ATP-dependent but ubiquitin-independent
-
Bercovich, Z., Rosenberg-Hasson, Y., Ciechanover, A., and Kahana, C. (1989) Degradation of ornithine decarboxylase in reticulocyte lysate is ATP-dependent but ubiquitin-independent. J. Biol. Chem. 264, 15949-15952
-
(1989)
J. Biol. Chem
, vol.264
, pp. 15949-15952
-
-
Bercovich, Z.1
Rosenberg-Hasson, Y.2
Ciechanover, A.3
Kahana, C.4
-
49
-
-
0026714435
-
Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination
-
Murakami, Y., Matsufuji, S., Kameji, T., Hayashi, S., Igarashi, K., Tamura, T., Tanaka, K., and Ichihara, A. (1992) Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination. Nature 360, 597-599
-
(1992)
Nature
, vol.360
, pp. 597-599
-
-
Murakami, Y.1
Matsufuji, S.2
Kameji, T.3
Hayashi, S.4
Igarashi, K.5
Tamura, T.6
Tanaka, K.7
Ichihara, A.8
-
50
-
-
79956270343
-
Noncytotoxic DsRed derivatives for whole-cell labeling
-
Strack, R. L., Keenan, R. J., and Glick, B. S. (2011) Noncytotoxic DsRed derivatives for whole-cell labeling. Methods Mol. Biol. 699, 355-370
-
(2011)
Methods Mol. Biol
, vol.699
, pp. 355-370
-
-
Strack, R.L.1
Keenan, R.J.2
Glick, B.S.3
-
51
-
-
0023003380
-
In vivo half-life of a protein is a function of its amino-terminal residue
-
Bachmair, A., Finley, D., and Varshavsky, A. (1986) In vivo half-life of a protein is a function of its amino-terminal residue. Science 234, 179-186
-
(1986)
Science
, vol.234
, pp. 179-186
-
-
Bachmair, A.1
Finley, D.2
Varshavsky, A.3
-
52
-
-
0024562943
-
The degradation signal in a short-lived protein
-
Bachmair, A., and Varshavsky, A. (1989) The degradation signal in a short-lived protein. Cell 56, 1019-1032
-
(1989)
Cell
, vol.56
, pp. 1019-1032
-
-
Bachmair, A.1
Varshavsky, A.2
-
53
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
Pédelacq, J.-D., Cabantous, S., Tran, T., Terwilliger, T. C., and Waldo, G. S. (2006) Engineering and characterization of a superfolder green fluorescent protein. Nat. Biotechnol. 24, 79-88
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 79-88
-
-
Pédelacq, J.-D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
54
-
-
0029873217
-
Histidine biosynthetic pathway and genes: Structure, regulation, and evolution
-
Alifano, P., Fani, R., Liò, P., Lazcano, A., Bazzicalupo, M., Carlomagno, M. S., and Bruni, C. B. (1996) Histidine biosynthetic pathway and genes: structure, regulation, and evolution. Microbiol. Rev. 60, 44-69
-
(1996)
Microbiol. Rev
, vol.60
, pp. 44-69
-
-
Alifano, P.1
Fani, R.2
Liò, P.3
Lazcano, A.4
Bazzicalupo, M.5
Carlomagno, M.S.6
Bruni, C.B.7
-
55
-
-
0028899164
-
Purification and characterization of the imidazoleglycerol-phosphate dehydratase of Saccharomyces cerevisiae from recombinant Escherichia coli
-
Hawkes, T. R., Thomas, P. G., Edwards, L. S., Rayner, S. J., Wilkinson, K. W., and Rice, D. W. (1995) Purification and characterization of the imidazoleglycerol-phosphate dehydratase of Saccharomyces cerevisiae from recombinant Escherichia coli. Biochem. J. 306, 385-397
-
(1995)
Biochem. J
, vol.306
, pp. 385-397
-
-
Hawkes, T.R.1
Thomas, P.G.2
Edwards, L.S.3
Rayner, S.J.4
Wilkinson, K.W.5
Rice, D.W.6
-
56
-
-
84942303989
-
Evolution of proteasome regulators in eukaryotes
-
Fort, P., Kajava, A. V., Delsuc, F., and Coux, O. (2015) Evolution of proteasome regulators in eukaryotes. Genome Biol. Evol. 7, 1363-1379
-
(2015)
Genome Biol. Evol
, vol.7
, pp. 1363-1379
-
-
Fort, P.1
Kajava, A.V.2
Delsuc, F.3
Coux, O.4
-
57
-
-
84865232752
-
Sequence-and species-dependence of proteasomal processivity
-
Kraut, D. A., Israeli, E., Schrader, E. K., Patil, A., Nakai, K., Nanavati, D., Inobe, T., and Matouschek, A. (2012) Sequence-and species-dependence of proteasomal processivity. ACS Chem. Biol. 7, 1444-1453
-
(2012)
ACS Chem. Biol
, vol.7
, pp. 1444-1453
-
-
Kraut, D.A.1
Israeli, E.2
Schrader, E.K.3
Patil, A.4
Nakai, K.5
Nanavati, D.6
Inobe, T.7
Matouschek, A.8
-
58
-
-
0034798985
-
Proteins containing the UBA domain are able to bind to multi-ubiquitin chains
-
Wilkinson, C. R., Seeger, M., Hartmann-Petersen, R., Stone, M., Wallace, M., Semple, C., and Gordon, C. (2001) Proteins containing the UBA domain are able to bind to multi-ubiquitin chains. Nat. Cell Biol. 3, 939-943
-
(2001)
Nat. Cell Biol
, vol.3
, pp. 939-943
-
-
Wilkinson, C.R.1
Seeger, M.2
Hartmann-Petersen, R.3
Stone, M.4
Wallace, M.5
Semple, C.6
Gordon, C.7
-
59
-
-
0032510057
-
Rad23 links DNA repair to the ubiquitin/proteasome pathway
-
Schauber, C., Chen, L., Tongaonkar, P., Vega, I., Lambertson, D., Potts, W., and Madura, K. (1998) Rad23 links DNA repair to the ubiquitin/proteasome pathway. Nature 391, 715-718
-
(1998)
Nature
, vol.391
, pp. 715-718
-
-
Schauber, C.1
Chen, L.2
Tongaonkar, P.3
Vega, I.4
Lambertson, D.5
Potts, W.6
Madura, K.7
-
60
-
-
84978951425
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B Stat. Methodol. 57, 289-300
-
(1995)
J. R. Stat. Soc. Series B Stat. Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
61
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132
-
(1982)
J. Mol. Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
62
-
-
0028361031
-
Accuracy of protein flexibility predictions
-
Vihinen, M., Torkkila, E., and Riikonen, P. (1994) Accuracy of protein flexibility predictions. Proteins 19, 141-149
-
(1994)
Proteins
, vol.19
, pp. 141-149
-
-
Vihinen, M.1
Torkkila, E.2
Riikonen, P.3
-
63
-
-
84904815090
-
The DynaMine webserver: Predicting protein dynamics from sequence
-
Cilia, E., Pancsa, R., Tompa, P., Lenaerts, T., and Vranken, W. F. (2014) The DynaMine webserver: predicting protein dynamics from sequence. Nucleic Acids Res. 42, W264-W270
-
(2014)
Nucleic Acids Res
, vol.42
, pp. W264-W270
-
-
Cilia, E.1
Pancsa, R.2
Tompa, P.3
Lenaerts, T.4
Vranken, W.F.5
-
64
-
-
84889560142
-
From protein sequence to dynamics and disorder with DynaMine
-
Cilia, E., Pancsa, R., Tompa, P., Lenaerts, T., and Vranken, W. F. (2013) From protein sequence to dynamics and disorder with DynaMine. Nat. Commun. 4, 2741
-
(2013)
Nat. Commun
, vol.4
, pp. 2741
-
-
Cilia, E.1
Pancsa, R.2
Tompa, P.3
Lenaerts, T.4
Vranken, W.F.5
-
65
-
-
84862992463
-
Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks
-
Buljan, M., Chalancon, G., Eustermann, S., Wagner, G. P., Fuxreiter, M., Bateman, A., and Babu, M. M. (2012) Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Mol. Cell 46, 871-883
-
(2012)
Mol. Cell
, vol.46
, pp. 871-883
-
-
Buljan, M.1
Chalancon, G.2
Eustermann, S.3
Wagner, G.P.4
Fuxreiter, M.5
Bateman, A.6
Babu, M.M.7
-
66
-
-
84863928687
-
Linear motifs confer functional diversity onto splice variants
-
Weatheritt, R. J., Davey, N. E., and Gibson, T. J. (2012) Linear motifs confer functional diversity onto splice variants. Nucleic Acids Res. 40, 7123-7131
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 7123-7131
-
-
Weatheritt, R.J.1
Davey, N.E.2
Gibson, T.J.3
-
67
-
-
30344466977
-
The processivity of multiubiquitination by the APC determines the order of substrate degradation
-
Rape, M., Reddy, S. K., and Kirschner, M. W. (2006) The processivity of multiubiquitination by the APC determines the order of substrate degradation. Cell 124, 89-103
-
(2006)
Cell
, vol.124
, pp. 89-103
-
-
Rape, M.1
Reddy, S.K.2
Kirschner, M.W.3
-
68
-
-
79959347898
-
Regulation of ubiquitin chain initiation to control the timing of substrate degradation
-
Williamson, A., Banerjee, S., Zhu, X., Philipp, I., Iavarone, A. T., and Rape, M. (2011) Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Mol. Cell 42, 744-757
-
(2011)
Mol. Cell
, vol.42
, pp. 744-757
-
-
Williamson, A.1
Banerjee, S.2
Zhu, X.3
Philipp, I.4
Iavarone, A.T.5
Rape, M.6
-
69
-
-
84927555890
-
Specificity of the anaphase-promoting complex: A single-molecule study
-
Lu, Y., Wang, W., and Kirschner, M. W. (2015) Specificity of the anaphase-promoting complex: a single-molecule study. Science 348, 1248737
-
(2015)
Science
, vol.348
, pp. 1248737
-
-
Lu, Y.1
Wang, W.2
Kirschner, M.W.3
-
70
-
-
84922393807
-
Ubiquitination in disease pathogenesis and treatment
-
Popovic, D., Vucic, D., and Dikic, I. (2014) Ubiquitination in disease pathogenesis and treatment. Nat. Med. 20, 1242-1253
-
(2014)
Nat. Med
, vol.20
, pp. 1242-1253
-
-
Popovic, D.1
Vucic, D.2
Dikic, I.3
-
71
-
-
9144223729
-
Inefficient degradation of truncated polyglutamine proteins by the proteasome
-
Holmberg, C. I., Staniszewski, K. E., Mensah, K. N., Matouschek, A., and Morimoto, R. I. (2004) Inefficient degradation of truncated polyglutamine proteins by the proteasome. EMBO J. 23, 4307-4318
-
(2004)
EMBO J
, vol.23
, pp. 4307-4318
-
-
Holmberg, C.I.1
Staniszewski, K.E.2
Mensah, K.N.3
Matouschek, A.4
Morimoto, R.I.5
-
72
-
-
84884567375
-
Expanded polyglutamine-containing N-terminal huntingtin fragments are entirely degraded by mammalian proteasomes
-
Juenemann, K., Schipper-Krom, S., Wiemhoefer, A., Kloss, A., Sanz Sanz, A., and Reits, E. A. (2013) Expanded polyglutamine-containing N-terminal huntingtin fragments are entirely degraded by mammalian proteasomes. J. Biol. Chem. 288, 27068-27084
-
(2013)
J. Biol. Chem
, vol.288
, pp. 27068-27084
-
-
Juenemann, K.1
Schipper-Krom, S.2
Wiemhoefer, A.3
Kloss, A.4
Sanz Sanz, A.5
Reits, E.A.6
-
73
-
-
0035096082
-
Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism
-
Wang, J., Song, J. J., Franklin, M. C., Kamtekar, S., Im, Y. J., Rho, S. H., Seong, I. S., Lee, C. S., Chung, C. H., and Eom, S. H. (2001) Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism. Structure 9, 177-184
-
(2001)
Structure
, vol.9
, pp. 177-184
-
-
Wang, J.1
Song, J.J.2
Franklin, M.C.3
Kamtekar, S.4
Im, Y.J.5
Rho, S.H.6
Seong, I.S.7
Lee, C.S.8
Chung, C.H.9
Eom, S.H.10
-
74
-
-
0348010363
-
Conserved pore residues in the AAA protease FtsH are important for proteolysis and its coupling to ATP hydrolysis
-
Yamada-Inagawa, T., Okuno, T., Karata, K., Yamanaka, K., and Ogura, T. (2003) Conserved pore residues in the AAA protease FtsH are important for proteolysis and its coupling to ATP hydrolysis. J. Biol. Chem. 278, 50182-50187
-
(2003)
J. Biol. Chem
, vol.278
, pp. 50182-50187
-
-
Yamada-Inagawa, T.1
Okuno, T.2
Karata, K.3
Yamanaka, K.4
Ogura, T.5
-
75
-
-
21244480104
-
Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation
-
Hinnerwisch, J., Fenton, W. A., Furtak, K. J., Farr, G. W., and Horwich, A. L. (2005) Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation. Cell 121, 1029-1041
-
(2005)
Cell
, vol.121
, pp. 1029-1041
-
-
Hinnerwisch, J.1
Fenton, W.A.2
Furtak, K.J.3
Farr, G.W.4
Horwich, A.L.5
-
76
-
-
65649123769
-
Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from
-
Zhang, F., Wu, Z., Zhang, P., Tian, G., Finley, D., and Shi, Y. (2009) Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii. Mol. Cell 34, 485-496
-
(2009)
Methanocaldococcus Jannaschii. Mol. Cell
, vol.34
, pp. 485-496
-
-
Zhang, F.1
Wu, Z.2
Zhang, P.3
Tian, G.4
Finley, D.5
Shi, Y.6
-
77
-
-
55549088522
-
+ ClpX machine grip substrates to drive translocation and unfolding
-
Martin, A., Baker, T. A., and Sauer, R. T. (2008) Pore loops of the AAA+ ClpX machine grip substrates to drive translocation and unfolding. Nat. Struct. Mol. Biol. 15, 1147-1151
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 1147-1151
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
78
-
-
84885428073
-
+ unfoldase
-
Beckwith, R., Estrin, E., Worden, E. J., and Martin, A. (2013) Reconstitution of the 26S proteasome reveals functional asymmetries in its AAA+ unfoldase. Nat. Struct. Mol. Biol. 20, 1164-1172
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1164-1172
-
-
Beckwith, R.1
Estrin, E.2
Worden, E.J.3
Martin, A.4
-
79
-
-
84855195754
-
ClpXP, an ATP-powered unfolding and protein-degradation machine
-
Baker, T. A., and Sauer, R. T. (2012) ClpXP, an ATP-powered unfolding and protein-degradation machine. Biochim. Biophys. Acta 1823, 15-28
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 15-28
-
-
Baker, T.A.1
Sauer, R.T.2
-
80
-
-
84947035580
-
+ proteolytic machine
-
Iosefson, O., Olivares, A. O., Baker, T. A., and Sauer, R. T. (2015) Dissection of axial-pore loop function during unfolding and translocation by a AAA+ proteolytic machine. Cell Rep. 12, 1032-1041
-
(2015)
Cell Rep
, vol.12
, pp. 1032-1041
-
-
Iosefson, O.1
Olivares, A.O.2
Baker, T.A.3
Sauer, R.T.4
-
81
-
-
39549084936
-
+ ClpX machine mediate unassisted and adaptor-dependent recognition of ssrA-tagged substrates
-
Martin, A., Baker, T. A., and Sauer, R. T. (2008) Diverse pore loops of the AAA+ ClpX machine mediate unassisted and adaptor-dependent recognition of ssrA-tagged substrates. Mol. Cell 29, 441-450
-
(2008)
Mol. Cell
, vol.29
, pp. 441-450
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
82
-
-
70849108762
-
+ motor revealed by multiscale molecular simulations
-
Koga, N., Kameda, T., Okazaki, K.-I., and Takada, S. (2009) Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations. Proc. Natl. Acad. Sci. U.S.A. 106, 18237-18242
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 18237-18242
-
-
Koga, N.1
Kameda, T.2
Okazaki, K.-I.3
Takada, S.4
-
83
-
-
84856976866
-
Complete subunit architecture of the proteasome regulatory particle
-
Lander, G. C., Estrin, E., Matyskiela, M. E., Bashore, C., Nogales, E., and Martin, A. (2012) Complete subunit architecture of the proteasome regulatory particle. Nature 482, 186-191
-
(2012)
Nature
, vol.482
, pp. 186-191
-
-
Lander, G.C.1
Estrin, E.2
Matyskiela, M.E.3
Bashore, C.4
Nogales, E.5
Martin, A.6
-
84
-
-
84880157841
-
Conformational switching of the 26S proteasome enables substrate degradation
-
Matyskiela, M. E., Lander, G. C., and Martin, A. (2013) Conformational switching of the 26S proteasome enables substrate degradation. Nat. Struct. Mol. Biol. 20, 781-788
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 781-788
-
-
Matyskiela, M.E.1
Lander, G.C.2
Martin, A.3
-
85
-
-
84876909425
-
Structure of the 26S proteasome with ATP-γS bound provides insights into the mechanism of nucleotide-dependent substrate translocation
-
Śledź, P., Unverdorben, P., Beck, F., Pfeifer, G., Schweitzer, A., Förster, F., and Baumeister, W. (2013) Structure of the 26S proteasome with ATP-γS bound provides insights into the mechanism of nucleotide-dependent substrate translocation. Proc. Natl. Acad. Sci. U.S.A. 110, 7264-7269
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 7264-7269
-
-
Śledź, P.1
Unverdorben, P.2
Beck, F.3
Pfeifer, G.4
Schweitzer, A.5
Förster, F.6
Baumeister, W.7
-
86
-
-
84898807479
-
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome
-
Unverdorben, P., Beck, F., ledź, P., Schweitzer, A., Pfeifer, G., Plitzko, J. M., Baumeister, W., and Förster, F. (2014) Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A. 111, 5544-5549
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 5544-5549
-
-
Unverdorben, P.1
Beck, F.2
Ledź, P.3
Schweitzer, A.4
Pfeifer, G.5
Plitzko, J.M.6
Baumeister, W.7
Förster, F.8
-
87
-
-
67651208925
-
+ proteases
-
Kirstein, J., Molière, N., Dougan, D. A., and Turgay, K. (2009) Adapting the machine: adaptor proteins for Hsp100/Clp and AAA+ proteases. Nat. Rev. Microbiol. 7, 589-599
-
(2009)
Nat. Rev. Microbiol
, vol.7
, pp. 589-599
-
-
Kirstein, J.1
Molière, N.2
Dougan, D.A.3
Turgay, K.4
-
88
-
-
0037351068
-
Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals
-
Flynn, J. M., Neher, S. B., Kim, Y. I., Sauer, R. T., and Baker, T. A. (2003) Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell 11, 671-683
-
(2003)
Mol. Cell
, vol.11
, pp. 671-683
-
-
Flynn, J.M.1
Neher, S.B.2
Kim, Y.I.3
Sauer, R.T.4
Baker, T.A.5
-
89
-
-
84890174353
-
Ubiquitin-independent proteasomal degradation
-
Erales, J., and Coffino, P. (2014) Ubiquitin-independent proteasomal degradation. Biochim. Biophys. Acta 1843, 216-221
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 216-221
-
-
Erales, J.1
Coffino, P.2
-
90
-
-
84941309133
-
Structural basis of antizymemediated regulation of polyamine homeostasis
-
Wu, H.-Y., Chen, S.-F., Hsieh, J.-Y., Chou, F., Wang, Y.-H., Lin, W.-T., Lee, P.-Y., Yu, Y.-J., Lin, L.-Y., Lin, T.-S., Lin, C.-L., Liu, G.-Y., Tzeng, S.-R., Hung, H.-C., and Chan, N.-L. (2015) Structural basis of antizymemediated regulation of polyamine homeostasis. Proc. Natl. Acad. Sci. U.S.A. 112, 11229-11234
-
(2015)
Proc. Natl. Acad. Sci. U.S.A
, vol.112
, pp. 11229-11234
-
-
Wu, H.-Y.1
Chen, S.-F.2
Hsieh, J.-Y.3
Chou, F.4
Wang, Y.-H.5
Lin, W.-T.6
Lee, P.-Y.7
Yu, Y.-J.8
Lin, L.-Y.9
Lin, T.-S.10
Lin, C.-L.11
Liu, G.-Y.12
Tzeng, S.-R.13
Hung, H.-C.14
Chan, N.-L.15
-
91
-
-
0037195846
-
Structural elements of antizymes 1 and 2 are required for proteasomal degradation of ornithine decarboxylase
-
Chen, H., MacDonald, A., and Coffino, P. (2002) Structural elements of antizymes 1 and 2 are required for proteasomal degradation of ornithine decarboxylase. J. Biol. Chem. 277, 45957-5961
-
(2002)
J. Biol. Chem
, vol.277
, pp. 45957-45961
-
-
Chen, H.1
MacDonald, A.2
Coffino, P.3
-
92
-
-
28844484999
-
Preparation of ubiquitinated substrates by the PY motif-insertion method for monitoring 26S proteasome activity
-
Saeki, Y., Isono, E., and Toh-E, A. (2005) Preparation of ubiquitinated substrates by the PY motif-insertion method for monitoring 26S proteasome activity. Methods Enzymol. 399, 215-227
-
(2005)
Methods Enzymol
, vol.399
, pp. 215-227
-
-
Saeki, Y.1
Isono, E.2
Toh-E, A.3
-
93
-
-
80055022365
-
Proteasomal degradation from internal sites favors partial proteolysis via remote domain stabilization
-
Kraut, D. A., and Matouschek, A. (2011) Proteasomal degradation from internal sites favors partial proteolysis via remote domain stabilization. ACS Chem. Biol. 6, 1087-1095
-
(2011)
ACS Chem. Biol
, vol.6
, pp. 1087-1095
-
-
Kraut, D.A.1
Matouschek, A.2
-
94
-
-
84962467507
-
A rapid and versatile method for generating proteins with defined ubiquitin chains
-
Martinez-Fonts, K., and Matouschek, A. (2016) A rapid and versatile method for generating proteins with defined ubiquitin chains. Biochemistry 55, 1898-1908
-
(2016)
Biochemistry
, vol.55
, pp. 1898-1908
-
-
Martinez-Fonts, K.1
Matouschek, A.2
-
95
-
-
0037022365
-
Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341
-
Fleming, J. A., Lightcap, E. S., Sadis, S., Thoroddsen, V., Bulawa, C. E., and Blackman, R. K. (2002) Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341. Proc. Natl. Acad. Sci. U.S.A. 99, 1461-1466
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 1461-1466
-
-
Fleming, J.A.1
Lightcap, E.S.2
Sadis, S.3
Thoroddsen, V.4
Bulawa, C.E.5
Blackman, R.K.6
-
96
-
-
10244240475
-
PDUAL, a multipurpose, multicopy vector capable of chromosomal integration in fission yeast
-
Matsuyama, A., Shirai, A., Yashiroda, Y., Kamata, A., Horinouchi, S., and Yoshida, M. (2004) pDUAL, a multipurpose, multicopy vector capable of chromosomal integration in fission yeast. Yeast 21, 1289-1305
-
(2004)
Yeast
, vol.21
, pp. 1289-1305
-
-
Matsuyama, A.1
Shirai, A.2
Yashiroda, Y.3
Kamata, A.4
Horinouchi, S.5
Yoshida, M.6
-
97
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. Red fluorescent protein
-
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N., Palmer, A. E., and Tsien, R. Y. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 22, 1567-1572
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
Tsien, R.Y.6
-
98
-
-
84963677297
-
An inducible system for rapid degradation of specific cellular proteins using proteasome adaptors
-
Wilmington, S. R., and Matouschek, A. (2016) An inducible system for rapid degradation of specific cellular proteins using proteasome adaptors. PLoS ONE 11, e0152679
-
(2016)
PLoS ONE
, vol.11
, pp. e0152679
-
-
Wilmington, S.R.1
Matouschek, A.2
-
99
-
-
0028447768
-
Elucidating the folding problem of helical peptides using empirical parameters
-
Muñoz, V., and Serrano, L. (1994) Elucidating the folding problem of helical peptides using empirical parameters. Nat. Struct. Biol. 1, 399-409
-
(1994)
Nat. Struct. Biol
, vol.1
, pp. 399-409
-
-
Muñoz, V.1
Serrano, L.2
-
100
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi, Z., Csizmok, V., Tompa, P., and Simon, I. (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21, 3433-3434
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
101
-
-
0034201441
-
EMBOSS: The european molecular biology open software suite
-
Rice, P., Longden, I., and Bleasby, A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16, 276-277
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
102
-
-
0028501914
-
Non-globular domains in protein sequences: Automated segmentation using complexity measures
-
Wootton, J. C. (1994) Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput. Chem. 18, 269-285
-
(1994)
Comput. Chem
, vol.18
, pp. 269-285
-
-
Wootton, J.C.1
-
103
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J. C., and Federhen, S. (1996) Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266, 554-571
-
(1996)
Methods Enzymol
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
104
-
-
79958148950
-
Autoantigen discovery with a synthetic human peptidome
-
Larman, H. B., Zhao, Z., Laserson, U., Li, M. Z., Ciccia, A., Gakidis, M. A., Church, G. M., Kesari, S., Leproust, E. M., Solimini, N. L., and Elledge, S. J. (2011) Autoantigen discovery with a synthetic human peptidome. Nat. Biotechnol. 29, 535-541
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 535-541
-
-
Larman, H.B.1
Zhao, Z.2
Laserson, U.3
Li, M.Z.4
Ciccia, A.5
Gakidis, M.A.6
Church, G.M.7
Kesari, S.8
Leproust, E.M.9
Solimini, N.L.10
Elledge, S.J.11
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