-
1
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. The energy landscapes and motions of proteins Science 1991, 254, 1598-1603 10.1126/science.1749933
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
2
-
-
0032993447
-
Polymer principles and protein folding
-
Dill, K. A. Polymer principles and protein folding Protein Sci. 1999, 8, 1166-1180 10.1110/ps.8.6.1166
-
(1999)
Protein Sci.
, vol.8
, pp. 1166-1180
-
-
Dill, K.A.1
-
3
-
-
35548976322
-
Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR
-
Tang, C.; Schwieters, C. D.; Clore, G. M. Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR Nature 2007, 449, 1078-1082 10.1038/nature06232
-
(2007)
Nature
, vol.449
, pp. 1078-1082
-
-
Tang, C.1
Schwieters, C.D.2
Clore, G.M.3
-
4
-
-
0033621104
-
Folding and binding cascades: Shifts in energy landscapes
-
Tsai, C. J.; Ma, B.; Nussinov, R. Folding and binding cascades: shifts in energy landscapes Proc. Natl. Acad. Sci. U. S. A. 1999, 96, 9970-9972 10.1073/pnas.96.18.9970
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9970-9972
-
-
Tsai, C.J.1
Ma, B.2
Nussinov, R.3
-
5
-
-
7244254183
-
Dynamics in the U6 RNA intramolecular stem-loop: A base flipping conformational change
-
Reiter, N. J.; Blad, H.; Abildgaard, F.; Butcher, S. E. Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change Biochemistry 2004, 43, 13739-13747 10.1021/bi048815y
-
(2004)
Biochemistry
, vol.43
, pp. 13739-13747
-
-
Reiter, N.J.1
Blad, H.2
Abildgaard, F.3
Butcher, S.E.4
-
6
-
-
68349106854
-
Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping
-
Venditti, V.; Clos, L., 2nd; Niccolai, N.; Butcher, S. E. Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping J. Mol. Biol. 2009, 391, 894-905 10.1016/j.jmb.2009.07.003
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 894-905
-
-
Venditti, V.1
Clos, L.2
Niccolai, N.3
Butcher, S.E.4
-
7
-
-
40249088362
-
Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL
-
Venditti, V.; Niccolai, N.; Butcher, S. E. Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL Nucleic Acids Res. 2007, 36, e20 10.1093/nar/gkm1062
-
(2007)
Nucleic Acids Res.
, vol.36
, pp. e20
-
-
Venditti, V.1
Niccolai, N.2
Butcher, S.E.3
-
8
-
-
35848929057
-
Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement
-
Suh, J. Y.; Tang, C.; Clore, G. M. Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement J. Am. Chem. Soc. 2007, 129, 12954-12955 10.1021/ja0760978
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 12954-12955
-
-
Suh, J.Y.1
Tang, C.2
Clore, G.M.3
-
9
-
-
60649109828
-
Protein allostery, signal transmission and dynamics: A classification scheme of allosteric mechanisms
-
Tsai, C. J.; Del Sol, A.; Nussinov, R. Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms Mol. BioSyst. 2009, 5, 207-216 10.1039/b819720b
-
(2009)
Mol. BioSyst.
, vol.5
, pp. 207-216
-
-
Tsai, C.J.1
Del Sol, A.2
Nussinov, R.3
-
10
-
-
71449103005
-
Hidden alternative structures of proline isomerase essential for catalysis
-
Fraser, J. S.; Clarkson, M. W.; Degnan, S. C.; Erion, R.; Kern, D.; Alber, T. Hidden alternative structures of proline isomerase essential for catalysis Nature 2009, 462, 669-673 10.1038/nature08615
-
(2009)
Nature
, vol.462
, pp. 669-673
-
-
Fraser, J.S.1
Clarkson, M.W.2
Degnan, S.C.3
Erion, R.4
Kern, D.5
Alber, T.6
-
11
-
-
36849039429
-
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
-
Henzler-Wildman, K. A.; Lei, M.; Thai, V.; Kerns, S. J.; Karplus, M.; Kern, D. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis Nature 2007, 450, 913-916 10.1038/nature06407
-
(2007)
Nature
, vol.450
, pp. 913-916
-
-
Henzler-Wildman, K.A.1
Lei, M.2
Thai, V.3
Kerns, S.J.4
Karplus, M.5
Kern, D.6
-
12
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
Henzler-Wildman, K. A.; Thai, V.; Lei, M.; Ott, M.; Wolf-Watz, M.; Fenn, T.; Pozharski, E.; Wilson, M. A.; Petsko, G. A.; Karplus, M.; Hubner, C. G.; Kern, D. Intrinsic motions along an enzymatic reaction trajectory Nature 2007, 450, 838-844 10.1038/nature06410
-
(2007)
Nature
, vol.450
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
Hubner, C.G.11
Kern, D.12
-
13
-
-
27744499156
-
Intrinsic dynamics of an enzyme underlies catalysis
-
Eisenmesser, E. Z.; Millet, O.; Labeikovsky, W.; Korzhnev, D. M.; Wolf-Watz, M.; Bosco, D. A.; Skalicky, J. J.; Kay, L. E.; Kern, D. Intrinsic dynamics of an enzyme underlies catalysis Nature 2005, 438, 117-121 10.1038/nature04105
-
(2005)
Nature
, vol.438
, pp. 117-121
-
-
Eisenmesser, E.Z.1
Millet, O.2
Labeikovsky, W.3
Korzhnev, D.M.4
Wolf-Watz, M.5
Bosco, D.A.6
Skalicky, J.J.7
Kay, L.E.8
Kern, D.9
-
14
-
-
84878224305
-
Side-chain conformational heterogeneity of intermediates in the Escherichia coli dihydrofolate reductase catalytic cycle
-
Tuttle, L. M.; Dyson, H. J.; Wright, P. E. Side-chain conformational heterogeneity of intermediates in the Escherichia coli dihydrofolate reductase catalytic cycle Biochemistry 2013, 52, 3464-3477 10.1021/bi400322e
-
(2013)
Biochemistry
, vol.52
, pp. 3464-3477
-
-
Tuttle, L.M.1
Dyson, H.J.2
Wright, P.E.3
-
15
-
-
79953823548
-
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
-
Bhabha, G.; Lee, J.; Ekiert, D. C.; Gam, J.; Wilson, I. A.; Dyson, H. J.; Benkovic, S. J.; Wright, P. E. A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis Science 2011, 332, 234-238 10.1126/science.1198542
-
(2011)
Science
, vol.332
, pp. 234-238
-
-
Bhabha, G.1
Lee, J.2
Ekiert, D.C.3
Gam, J.4
Wilson, I.A.5
Dyson, H.J.6
Benkovic, S.J.7
Wright, P.E.8
-
16
-
-
84894280807
-
Interplay between conformational selection and induced fit in multidomain protein-ligand binding probed by paramagnetic relaxation enhancement
-
Clore, G. M. Interplay between conformational selection and induced fit in multidomain protein-ligand binding probed by paramagnetic relaxation enhancement Biophys. Chem. 2014, 186, 3-12 10.1016/j.bpc.2013.08.006
-
(2014)
Biophys. Chem.
, vol.186
, pp. 3-12
-
-
Clore, G.M.1
-
17
-
-
84864551231
-
Conformational selection and substrate binding regulate the monomer/dimer equilibrium of the C-terminal domain of Escherichia coli Enzyme i
-
Venditti, V.; Clore, G. M. Conformational selection and substrate binding regulate the monomer/dimer equilibrium of the C-terminal domain of Escherichia coli Enzyme I J. Biol. Chem. 2012, 287, 26989-26998 10.1074/jbc.M112.382291
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 26989-26998
-
-
Venditti, V.1
Clore, G.M.2
-
18
-
-
84898993517
-
The ensemble nature of allostery
-
Motlagh, H. N.; Wrabl, J. O.; Li, J.; Hilser, V. J. The ensemble nature of allostery Nature 2014, 508, 331-339 10.1038/nature13001
-
(2014)
Nature
, vol.508
, pp. 331-339
-
-
Motlagh, H.N.1
Wrabl, J.O.2
Li, J.3
Hilser, V.J.4
-
19
-
-
84884593859
-
Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: Sugar phosphotransferase system
-
Clore, G. M.; Venditti, V. Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system Trends Biochem. Sci. 2013, 38, 515-530 10.1016/j.tibs.2013.08.003
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 515-530
-
-
Clore, G.M.1
Venditti, V.2
-
20
-
-
84924003209
-
Visualizing transient dark states by NMR spectroscopy
-
Anthis, N. J.; Clore, G. M. Visualizing transient dark states by NMR spectroscopy Q. Rev. Biophys. 2015, 48, 35-116 10.1017/S0033583514000122
-
(2015)
Q. Rev. Biophys.
, vol.48
, pp. 35-116
-
-
Anthis, N.J.1
Clore, G.M.2
-
21
-
-
84885162175
-
Ensemble-based interpretations of NMR structural data to describe protein internal dynamics
-
Angyan, A. F.; Gaspari, Z. Ensemble-based interpretations of NMR structural data to describe protein internal dynamics Molecules 2013, 18, 10548-10567 10.3390/molecules180910548
-
(2013)
Molecules
, vol.18
, pp. 10548-10567
-
-
Angyan, A.F.1
Gaspari, Z.2
-
22
-
-
84908221627
-
Modelling dynamics in protein crystal structures by ensemble refinement
-
Burnley, B. T.; Afonine, P. V.; Adams, P. D.; Gros, P. Modelling dynamics in protein crystal structures by ensemble refinement eLife 2012, 1, e00311 10.7554/eLife.00311
-
(2012)
ELife
, vol.1
, pp. e00311
-
-
Burnley, B.T.1
Afonine, P.V.2
Adams, P.D.3
Gros, P.4
-
23
-
-
0035312659
-
Recent advances in FRET: Distance determination in protein-DNA complexes
-
Hillisch, A.; Lorenz, M.; Diekmann, S. Recent advances in FRET: distance determination in protein-DNA complexes Curr. Opin. Struct. Biol. 2001, 11, 201-207 10.1016/S0959-440X(00)00190-1
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 201-207
-
-
Hillisch, A.1
Lorenz, M.2
Diekmann, S.3
-
24
-
-
44949236117
-
High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation
-
Altenbach, C.; Kusnetzow, A. K.; Ernst, O. P.; Hofmann, K. P.; Hubbell, W. L. High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 7439-7444 10.1073/pnas.0802515105
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7439-7444
-
-
Altenbach, C.1
Kusnetzow, A.K.2
Ernst, O.P.3
Hofmann, K.P.4
Hubbell, W.L.5
-
25
-
-
35448961949
-
Methods and applications of site-directed spin labeling EPR spectroscopy
-
Klug, C. S.; Feix, J. B. Methods and applications of site-directed spin labeling EPR spectroscopy Methods Cell Biol. 2008, 84, 617-658 10.1016/S0091-679X(07)84020-9
-
(2008)
Methods Cell Biol.
, vol.84
, pp. 617-658
-
-
Klug, C.S.1
Feix, J.B.2
-
26
-
-
79960909252
-
Using chemical shifts to determine structural changes in proteins upon complex formation
-
Cavalli, A.; Montalvao, R. W.; Vendruscolo, M. Using chemical shifts to determine structural changes in proteins upon complex formation J. Phys. Chem. B 2011, 115, 9491-9494 10.1021/jp202647q
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 9491-9494
-
-
Cavalli, A.1
Montalvao, R.W.2
Vendruscolo, M.3
-
27
-
-
0000951193
-
Time- and ensemble-averaged direct NOE restraints
-
Bonvin, A. M.; Boelens, R.; Kaptein, R. Time- and ensemble-averaged direct NOE restraints J. Biomol. NMR 1994, 4, 143-149 10.1007/BF00178343
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 143-149
-
-
Bonvin, A.M.1
Boelens, R.2
Kaptein, R.3
-
28
-
-
0027398888
-
Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor
-
Kemmink, J.; van Mierlo, C. P.; Scheek, R. M.; Creighton, T. E. Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor J. Mol. Biol. 1993, 230, 312-322 10.1006/jmbi.1993.1144
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 312-322
-
-
Kemmink, J.1
Van Mierlo, C.P.2
Scheek, R.M.3
Creighton, T.E.4
-
29
-
-
84867232619
-
Spatial elucidation of motion in proteins by ensemble-based structure calculation using exact NOEs
-
Vogeli, B.; Kazemi, S.; Guntert, P.; Riek, R. Spatial elucidation of motion in proteins by ensemble-based structure calculation using exact NOEs Nat. Struct. Mol. Biol. 2012, 19, 1053-1057 10.1038/nsmb.2355
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1053-1057
-
-
Vogeli, B.1
Kazemi, S.2
Guntert, P.3
Riek, R.4
-
30
-
-
33645868288
-
Using Xplor-NIH for NMR molecular structure determination
-
Schwieters, C. D.; Kuszewski, J. J.; Clore, G. M. Using Xplor-NIH for NMR molecular structure determination Prog. Nucl. Magn. Reson. Spectrosc. 2006, 48, 47-62 10.1016/j.pnmrs.2005.10.001
-
(2006)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.48
, pp. 47-62
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Clore, G.M.3
-
31
-
-
29444446536
-
Concordance of residual dipolar couplings, backbone order parameters and crystallographic B-factors for a small alpha/beta protein: A unified picture of high probability, fast atomic motions in proteins
-
Clore, G. M.; Schwieters, C. D. Concordance of residual dipolar couplings, backbone order parameters and crystallographic B-factors for a small alpha/beta protein: a unified picture of high probability, fast atomic motions in proteins J. Mol. Biol. 2006, 355, 879-886 10.1016/j.jmb.2005.11.042
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 879-886
-
-
Clore, G.M.1
Schwieters, C.D.2
-
32
-
-
3042846748
-
Determination of protein structures consistent with NMR order parameters
-
Best, R. B.; Vendruscolo, M. Determination of protein structures consistent with NMR order parameters J. Am. Chem. Soc. 2004, 126, 8090-8091 10.1021/ja0396955
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8090-8091
-
-
Best, R.B.1
Vendruscolo, M.2
-
33
-
-
65349142168
-
Functional aspects of the solution structure and dynamics of PAF - A highly-stable antifungal protein from Penicillium chrysogenum
-
Batta, G.; Barna, T.; Gaspari, Z.; Sandor, S.; Kover, K. E.; Binder, U.; Sarg, B.; Kaiserer, L.; Chhillar, A. K.; Eigentler, A.; Leiter, E.; Hegedus, N.; Pocsi, I.; Lindner, H.; Marx, F. Functional aspects of the solution structure and dynamics of PAF - a highly-stable antifungal protein from Penicillium chrysogenum FEBS J. 2009, 276, 2875-2890 10.1111/j.1742-4658.2009.07011.x
-
(2009)
FEBS J.
, vol.276
, pp. 2875-2890
-
-
Batta, G.1
Barna, T.2
Gaspari, Z.3
Sandor, S.4
Kover, K.E.5
Binder, U.6
Sarg, B.7
Kaiserer, L.8
Chhillar, A.K.9
Eigentler, A.10
Leiter, E.11
Hegedus, N.12
Pocsi, I.13
Lindner, H.14
Marx, F.15
-
34
-
-
84922440380
-
Quantitative residue-specific protein backbone torsion angle dynamics from concerted measurement of 3J couplings
-
Lee, J. H.; Li, F.; Grishaev, A.; Bax, A. Quantitative residue-specific protein backbone torsion angle dynamics from concerted measurement of 3J couplings J. Am. Chem. Soc. 2015, 137, 1432-1435 10.1021/ja512593s
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 1432-1435
-
-
Lee, J.H.1
Li, F.2
Grishaev, A.3
Bax, A.4
-
35
-
-
12744263121
-
Simultaneous determination of protein structure and dynamics
-
Lindorff-Larsen, K.; Best, R. B.; Depristo, M. A.; Dobson, C. M.; Vendruscolo, M. Simultaneous determination of protein structure and dynamics Nature 2005, 433, 128-132 10.1038/nature03199
-
(2005)
Nature
, vol.433
, pp. 128-132
-
-
Lindorff-Larsen, K.1
Best, R.B.2
Depristo, M.A.3
Dobson, C.M.4
Vendruscolo, M.5
-
36
-
-
1542317796
-
How much backbone motion in ubiquitin is required to account for dipolar coupling data measured in multiple alignment media as assessed by independent cross-validation?
-
Clore, G. M.; Schwieters, C. D. How much backbone motion in ubiquitin is required to account for dipolar coupling data measured in multiple alignment media as assessed by independent cross-validation? J. Am. Chem. Soc. 2004, 126, 2923-2938 10.1021/ja0386804
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 2923-2938
-
-
Clore, G.M.1
Schwieters, C.D.2
-
37
-
-
0041467255
-
Orientation restraints in molecular dynamics simulations using time and ensemble averaging
-
Hess, B.; Scheek, R. M. Orientation restraints in molecular dynamics simulations using time and ensemble averaging J. Magn. Reson. 2003, 164, 19-27 10.1016/S1090-7807(03)00178-2
-
(2003)
J. Magn. Reson.
, vol.164
, pp. 19-27
-
-
Hess, B.1
Scheek, R.M.2
-
38
-
-
33645463245
-
Conformational fluctuations affect protein alignment in dilute liquid crystal media
-
Louhivuori, M.; Otten, R.; Lindorff-Larsen, K.; Annila, A. Conformational fluctuations affect protein alignment in dilute liquid crystal media J. Am. Chem. Soc. 2006, 128, 4371-4376 10.1021/ja0576334
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 4371-4376
-
-
Louhivuori, M.1
Otten, R.2
Lindorff-Larsen, K.3
Annila, A.4
-
39
-
-
84865130867
-
Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings
-
Montalvao, R. W.; De Simone, A.; Vendruscolo, M. Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings J. Biomol. NMR 2012, 53, 281-292 10.1007/s10858-012-9644-3
-
(2012)
J. Biomol. NMR
, vol.53
, pp. 281-292
-
-
Montalvao, R.W.1
De Simone, A.2
Vendruscolo, M.3
-
40
-
-
83455218417
-
Determination of conformational equilibria in proteins using residual dipolar couplings
-
De Simone, A.; Montalvao, R. W.; Vendruscolo, M. Determination of conformational equilibria in proteins using residual dipolar couplings J. Chem. Theory Comput. 2011, 7, 4189-4195 10.1021/ct200361b
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 4189-4195
-
-
De Simone, A.1
Montalvao, R.W.2
Vendruscolo, M.3
-
41
-
-
70349093561
-
Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes
-
Clore, G. M.; Iwahara, J. Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes Chem. Rev. 2009, 109, 4108-4139 10.1021/cr900033p
-
(2009)
Chem. Rev.
, vol.109
, pp. 4108-4139
-
-
Clore, G.M.1
Iwahara, J.2
-
42
-
-
33646356250
-
Detecting transient intermediates in macromolecular binding by paramagnetic NMR
-
Iwahara, J.; Clore, G. M. Detecting transient intermediates in macromolecular binding by paramagnetic NMR Nature 2006, 440, 1227-1230 10.1038/nature04673
-
(2006)
Nature
, vol.440
, pp. 1227-1230
-
-
Iwahara, J.1
Clore, G.M.2
-
43
-
-
2442433447
-
Ensemble approach for NMR structure refinement against 1H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule
-
Iwahara, J.; Schwieters, C. D.; Clore, G. M. Ensemble approach for NMR structure refinement against 1H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule J. Am. Chem. Soc. 2004, 126, 5879-5896 10.1021/ja031580d
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5879-5896
-
-
Iwahara, J.1
Schwieters, C.D.2
Clore, G.M.3
-
44
-
-
33644793339
-
Structural interpretation of hydrogen exchange protection factors in proteins: Characterization of the native state fluctuations of CI2
-
Best, R. B.; Vendruscolo, M. Structural interpretation of hydrogen exchange protection factors in proteins: characterization of the native state fluctuations of CI2 Structure 2006, 14, 97-106 10.1016/j.str.2005.09.012
-
(2006)
Structure
, vol.14
, pp. 97-106
-
-
Best, R.B.1
Vendruscolo, M.2
-
45
-
-
58149354711
-
Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement
-
Clore, G. M. Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement Mol. BioSyst. 2008, 4, 1058-1069 10.1039/b810232e
-
(2008)
Mol. BioSyst.
, vol.4
, pp. 1058-1069
-
-
Clore, G.M.1
-
46
-
-
84862270506
-
Atomic model of the type III secretion system needle
-
Loquet, A.; Sgourakis, N. G.; Gupta, R.; Giller, K.; Riedel, D.; Goosmann, C.; Griesinger, C.; Kolbe, M.; Baker, D.; Becker, S.; Lange, A. Atomic model of the type III secretion system needle Nature 2012, 486, 276-279 10.1038/nature11079
-
(2012)
Nature
, vol.486
, pp. 276-279
-
-
Loquet, A.1
Sgourakis, N.G.2
Gupta, R.3
Giller, K.4
Riedel, D.5
Goosmann, C.6
Griesinger, C.7
Kolbe, M.8
Baker, D.9
Becker, S.10
Lange, A.11
-
47
-
-
77956641793
-
Solution structure of the 128 kDa enzyme i dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small- and wide-angle X-ray scattering
-
Schwieters, C. D.; Suh, J. Y.; Grishaev, A.; Ghirlando, R.; Takayama, Y.; Clore, G. M. Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small- and wide-angle X-ray scattering J. Am. Chem. Soc. 2010, 132, 13026-13045 10.1021/ja105485b
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 13026-13045
-
-
Schwieters, C.D.1
Suh, J.Y.2
Grishaev, A.3
Ghirlando, R.4
Takayama, Y.5
Clore, G.M.6
-
48
-
-
79851489016
-
Combined use of residual dipolar couplings and solution X-ray scattering to rapidly probe rigid-body conformational transitions in a non-phosphorylatable active-site mutant of the 128 kDa enzyme i dimer
-
Takayama, Y.; Schwieters, C. D.; Grishaev, A.; Ghirlando, R.; Clore, G. M. Combined use of residual dipolar couplings and solution X-ray scattering to rapidly probe rigid-body conformational transitions in a non-phosphorylatable active-site mutant of the 128 kDa enzyme I dimer J. Am. Chem. Soc. 2011, 133, 424-427 10.1021/ja109866w
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 424-427
-
-
Takayama, Y.1
Schwieters, C.D.2
Grishaev, A.3
Ghirlando, R.4
Clore, G.M.5
-
49
-
-
84944930599
-
Unique role of the WD-40 repeat protein 5 (WDR5) subunit within the mixed lineage leukemia 3 (MLL3) histone methyltransferase complex
-
Shinsky, S. A.; Cosgrove, M. S. Unique role of the WD-40 repeat protein 5 (WDR5) subunit within the mixed lineage leukemia 3 (MLL3) histone methyltransferase complex J. Biol. Chem. 2015, 290, 25819-25833 10.1074/jbc.M115.684142
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 25819-25833
-
-
Shinsky, S.A.1
Cosgrove, M.S.2
-
50
-
-
84943581681
-
The PTEN tumor suppressor forms homodimers in solution
-
Heinrich, F.; Chakravarthy, S.; Nanda, H.; Papa, A.; Pandolfi, P. P.; Ross, A. H.; Harishchandra, R. K.; Gericke, A.; Losche, M. The PTEN tumor suppressor forms homodimers in solution Structure 2015, 23, 1952-1957 10.1016/j.str.2015.07.012
-
(2015)
Structure
, vol.23
, pp. 1952-1957
-
-
Heinrich, F.1
Chakravarthy, S.2
Nanda, H.3
Papa, A.4
Pandolfi, P.P.5
Ross, A.H.6
Harishchandra, R.K.7
Gericke, A.8
Losche, M.9
-
51
-
-
84875471554
-
RNA 3D structure prediction by using a coarse-grained model and experimental data
-
Xia, Z.; Bell, D. R.; Shi, Y.; Ren, P. RNA 3D structure prediction by using a coarse-grained model and experimental data J. Phys. Chem. B 2013, 117, 3135-3144 10.1021/jp400751w
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 3135-3144
-
-
Xia, Z.1
Bell, D.R.2
Shi, Y.3
Ren, P.4
-
52
-
-
68349097394
-
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
-
Hura, G. L.; Menon, A. L.; Hammel, M.; Rambo, R. P.; Poole, F. L., 2nd; Tsutakawa, S. E.; Jenney, F. E., Jr.; Classen, S.; Frankel, K. A.; Hopkins, R. C.; Yang, S. J.; Scott, J. W.; Dillard, B. D.; Adams, M. W.; Tainer, J. A. Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS) Nat. Methods 2009, 6, 606-612 10.1038/nmeth.1353
-
(2009)
Nat. Methods
, vol.6
, pp. 606-612
-
-
Hura, G.L.1
Menon, A.L.2
Hammel, M.3
Rambo, R.P.4
Poole, F.L.5
Tsutakawa, S.E.6
Jenney, Jr.F.E.7
Classen, S.8
Frankel, K.A.9
Hopkins, R.C.10
Yang, S.J.11
Scott, J.W.12
Dillard, B.D.13
Adams, M.W.14
Tainer, J.A.15
-
53
-
-
34248363563
-
Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography
-
Tsutakawa, S. E.; Hura, G. L.; Frankel, K. A.; Cooper, P. K.; Tainer, J. A. Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography J. Struct. Biol. 2007, 158, 214-223 10.1016/j.jsb.2006.09.008
-
(2007)
J. Struct. Biol.
, vol.158
, pp. 214-223
-
-
Tsutakawa, S.E.1
Hura, G.L.2
Frankel, K.A.3
Cooper, P.K.4
Tainer, J.A.5
-
54
-
-
85027476573
-
SAXS: Structure Verification of an S-Layer Protein using a Fractal Mean Force Potential
-
Horejs, C.; Pum, D.; Sleytr, U. B.; Tscheliessnig, R. SAXS: Structure Verification of an S-Layer Protein using a Fractal Mean Force Potential Biophys. J. 2010, 98, 760a 10.1016/j.bpj.2009.12.4171
-
(2010)
Biophys. J.
, vol.98
, pp. 760a
-
-
Horejs, C.1
Pum, D.2
Sleytr, U.B.3
Tscheliessnig, R.4
-
55
-
-
0035129405
-
Protein crystallography with neutrons - Status and perspectives
-
Gutberlet, T.; Heinemann, U.; Steiner, M. Protein crystallography with neutrons - status and perspectives Acta Crystallogr., Sect. D: Biol. Crystallogr. 2001, 57, 349-354 10.1107/S0907444900019934
-
(2001)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.57
, pp. 349-354
-
-
Gutberlet, T.1
Heinemann, U.2
Steiner, M.3
-
56
-
-
84886896813
-
Small angle neutron scattering for the study of solubilised membrane proteins
-
Breyton, C.; Gabel, F.; Lethier, M.; Flayhan, A.; Durand, G.; Jault, J. M.; Juillan-Binard, C.; Imbert, L.; Moulin, M.; Ravaud, S.; Hartlein, M.; Ebel, C. Small angle neutron scattering for the study of solubilised membrane proteins Eur. Phys. J. E: Soft Matter Biol. Phys. 2013, 36, 71 10.1140/epje/i2013-13071-6
-
(2013)
Eur. Phys. J. E: Soft Matter Biol. Phys.
, vol.36
, pp. 71
-
-
Breyton, C.1
Gabel, F.2
Lethier, M.3
Flayhan, A.4
Durand, G.5
Jault, J.M.6
Juillan-Binard, C.7
Imbert, L.8
Moulin, M.9
Ravaud, S.10
Hartlein, M.11
Ebel, C.12
-
57
-
-
77149170364
-
Improving small-angle X-ray scattering data for structural analyses of the RNA world
-
Rambo, R. P.; Tainer, J. A. Improving small-angle X-ray scattering data for structural analyses of the RNA world RNA 2010, 16, 638-646 10.1261/rna.1946310
-
(2010)
RNA
, vol.16
, pp. 638-646
-
-
Rambo, R.P.1
Tainer, J.A.2
-
58
-
-
84866414232
-
Contrast-matched small-angle X-ray scattering from a heavy-atom-labeled protein in structure determination: Application to a lead-substituted calmodulin-peptide complex
-
Grishaev, A.; Anthis, N. J.; Clore, G. M. Contrast-matched small-angle X-ray scattering from a heavy-atom-labeled protein in structure determination: application to a lead-substituted calmodulin-peptide complex J. Am. Chem. Soc. 2012, 134, 14686-14689 10.1021/ja306359z
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 14686-14689
-
-
Grishaev, A.1
Anthis, N.J.2
Clore, G.M.3
-
59
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam, C. D.; Hammel, M.; Hura, G. L.; Tainer, J. A. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution Q. Rev. Biophys. 2007, 40, 191-285 10.1017/S0033583507004635
-
(2007)
Q. Rev. Biophys.
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
60
-
-
84875605901
-
Sample preparation, data collection, and preliminary data analysis in biomolecular solution X-ray scattering
-
Chapter 17, Unit 17.14
-
Grishaev, A. Sample preparation, data collection, and preliminary data analysis in biomolecular solution X-ray scattering. Curr. Protoc. Protein Sci. 2012, Chapter 17, Unit 17.14. 10.1002/0471140864.ps1714s70
-
(2012)
Curr. Protoc. Protein Sci.
-
-
Grishaev, A.1
-
61
-
-
84924266663
-
Radiation damage to macromolecules: Kill or cure?
-
Garman, E. F.; Weik, M. Radiation damage to macromolecules: kill or cure? J. Synchrotron Radiat. 2015, 22, 195-200 10.1107/S160057751500380X
-
(2015)
J. Synchrotron Radiat.
, vol.22
, pp. 195-200
-
-
Garman, E.F.1
Weik, M.2
-
62
-
-
33646418410
-
Sample holder for small-angle x-ray scattering static and flow cell measurement
-
Lipfert, J.; Millett, I. S.; Seifert, S.; Doniach, S. Sample holder for small-angle x-ray scattering static and flow cell measurement Rev. Sci. Instrum. 2006, 77, 046108 10.1063/1.2194484
-
(2006)
Rev. Sci. Instrum.
, vol.77
, pp. 046108
-
-
Lipfert, J.1
Millett, I.S.2
Seifert, S.3
Doniach, S.4
-
63
-
-
84994930420
-
Instruments and methods for small-angle scattering with synchrotron radiation
-
Koch, M. H. J. Instruments and methods for small-angle scattering with synchrotron radiation Makromol. Chem., Macromol. Symp. 1988, 15, 19-90 10.1002/masy.19880150106
-
(1988)
Makromol. Chem., Macromol. Symp.
, vol.15
, pp. 19-90
-
-
Koch, M.H.J.1
-
64
-
-
0036216848
-
High-dynamic range SAXS data acquisition with an X-ray image intensifier
-
Pontoni, D.; Narayanan, T.; Rennie, A. High-dynamic range SAXS data acquisition with an X-ray image intensifier J. Appl. Crystallogr. 2002, 35, 207-211 10.1107/S0021889802000493
-
(2002)
J. Appl. Crystallogr.
, vol.35
, pp. 207-211
-
-
Pontoni, D.1
Narayanan, T.2
Rennie, A.3
-
65
-
-
38849143134
-
A 9 keV electron-impact liquid-gallium-jet x-ray source
-
Otendal, M.; Tuohimaa, T.; Vogt, U.; Hertz, H. M. A 9 keV electron-impact liquid-gallium-jet x-ray source Rev. Sci. Instrum. 2008, 79, 016102 10.1063/1.2833838
-
(2008)
Rev. Sci. Instrum.
, vol.79
, pp. 016102
-
-
Otendal, M.1
Tuohimaa, T.2
Vogt, U.3
Hertz, H.M.4
-
66
-
-
78651082010
-
SAXS Instrumentation for Synchrotron Radiation then and now
-
Koch, M. H. J. SAXS Instrumentation for Synchrotron Radiation then and now J. Phys. Conf. Ser. 2010, 247, 1-23 10.1088/1742-6596/247/1/012001
-
(2010)
J. Phys. Conf. Ser.
, vol.247
, pp. 1-23
-
-
Koch, M.H.J.1
-
67
-
-
0028378047
-
Analysis of Neutron and X-ray Reflectivity Data. I. Theory
-
Hamley, I. W.; Pedersen, J. S. Analysis of Neutron and X-ray Reflectivity Data. I. Theory J. Appl. Crystallogr. 1994, 27, 29-35 10.1107/S0021889893006260
-
(1994)
J. Appl. Crystallogr.
, vol.27
, pp. 29-35
-
-
Hamley, I.W.1
Pedersen, J.S.2
-
68
-
-
0001170486
-
A laser-aided prealigned pinhole collimator for synchrotron x rays
-
Chu, B.; Harney, P. J.; Li, Y.; Linliu, K.; Yeh, F. A laser-aided prealigned pinhole collimator for synchrotron x rays Rev. Sci. Instrum. 1994, 65, 597-602 10.1063/1.1145123
-
(1994)
Rev. Sci. Instrum.
, vol.65
, pp. 597-602
-
-
Chu, B.1
Harney, P.J.2
Li, Y.3
Linliu, K.4
Yeh, F.5
-
69
-
-
78650875667
-
Modulated 3D cross-correlation light scattering: Improving turbid sample characterization
-
Block, I. D.; Scheffold, F. Modulated 3D cross-correlation light scattering: improving turbid sample characterization Rev. Sci. Instrum. 2010, 81, 123107 10.1063/1.3518961
-
(2010)
Rev. Sci. Instrum.
, vol.81
, pp. 123107
-
-
Block, I.D.1
Scheffold, F.2
-
70
-
-
34249894142
-
Small-angle X-ray scattering from RNA, proteins, and protein complexes
-
Lipfert, J.; Doniach, S. Small-angle X-ray scattering from RNA, proteins, and protein complexes Annu. Rev. Biophys. Biomol. Struct. 2007, 36, 307-327 10.1146/annurev.biophys.36.040306.132655
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, pp. 307-327
-
-
Lipfert, J.1
Doniach, S.2
-
71
-
-
0028173333
-
How random is a highly denatured protein?
-
Calmettes, P.; Durand, D.; Desmadril, M.; Minard, P.; Receveur, V.; Smith, J. C. How random is a highly denatured protein? Biophys. Chem. 1994, 53, 105-113 10.1016/0301-4622(94)00081-6
-
(1994)
Biophys. Chem.
, vol.53
, pp. 105-113
-
-
Calmettes, P.1
Durand, D.2
Desmadril, M.3
Minard, P.4
Receveur, V.5
Smith, J.C.6
-
72
-
-
0035354585
-
Changes in biomolecular conformation seen by small angle X-ray scattering
-
Doniach, S. Changes in biomolecular conformation seen by small angle X-ray scattering Chem. Rev. 2001, 101, 1763-1778 10.1021/cr990071k
-
(2001)
Chem. Rev.
, vol.101
, pp. 1763-1778
-
-
Doniach, S.1
-
73
-
-
84980086394
-
Molecular Form Factors in X-ray Crystallography
-
Groenewegen, P.; Feil, D. Molecular Form Factors in X-ray Crystallography Acta Crystallogr., Sect. A: Cryst. Phys., Diffr., Theor. Gen. Crystallogr. 1969, 25, 444-450 10.1107/S0567739469000891
-
(1969)
Acta Crystallogr., Sect. A: Cryst. Phys., Diffr., Theor. Gen. Crystallogr.
, vol.25
, pp. 444-450
-
-
Groenewegen, P.1
Feil, D.2
-
74
-
-
0000155365
-
Form and structure factors of water/AOT/Oil microemulsions from synchrotron SAXS
-
Hilfiker, R.; Eicke, H.; Sager, W.; Steeb, C.; Hofmeier, U.; Gehrke, R. Form and structure factors of water/AOT/Oil microemulsions from synchrotron SAXS Ber. Bunsenges Phys. Chem. 1990, 94, 677-683 10.1002/bbpc.19900940611
-
(1990)
Ber. Bunsenges Phys. Chem.
, vol.94
, pp. 677-683
-
-
Hilfiker, R.1
Eicke, H.2
Sager, W.3
Steeb, C.4
Hofmeier, U.5
Gehrke, R.6
-
75
-
-
84941337058
-
Correlated changes in structure and viscosity during gelatinization and gelation of tapioca starch granules
-
Huang, H. K.; Sheu, H. S.; Chuang, W. T.; Jeng, U. S.; Su, A. C.; Wu, W. R.; Liao, K. F.; Chen, C. Y.; Chang, S. Y.; Lai, H. M. Correlated changes in structure and viscosity during gelatinization and gelation of tapioca starch granules IUCrJ 2014, 1, 418-428 10.1107/S2052252514019137
-
(2014)
IUCrJ
, vol.1
, pp. 418-428
-
-
Huang, H.K.1
Sheu, H.S.2
Chuang, W.T.3
Jeng, U.S.4
Su, A.C.5
Wu, W.R.6
Liao, K.F.7
Chen, C.Y.8
Chang, S.Y.9
Lai, H.M.10
-
76
-
-
33847119938
-
Protein interactions studied by SAXS: Effect of ionic strength and protein concentration for BSA in aqueous solutions
-
Zhang, F.; Skoda, M. W.; Jacobs, R. M.; Martin, R. A.; Martin, C. M.; Schreiber, F. Protein interactions studied by SAXS: effect of ionic strength and protein concentration for BSA in aqueous solutions J. Phys. Chem. B 2007, 111, 251-259 10.1021/jp0649955
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 251-259
-
-
Zhang, F.1
Skoda, M.W.2
Jacobs, R.M.3
Martin, R.A.4
Martin, C.M.5
Schreiber, F.6
-
77
-
-
84921810672
-
The accurate assessment of small-angle X-ray scattering data
-
Grant, T. D.; Luft, J. R.; Carter, L. G.; Matsui, T.; Weiss, T. M.; Martel, A.; Snell, E. H. The accurate assessment of small-angle X-ray scattering data Acta Crystallogr., Sect. D: Biol. Crystallogr. 2015, 71, 45-56 10.1107/S1399004714010876
-
(2015)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.71
, pp. 45-56
-
-
Grant, T.D.1
Luft, J.R.2
Carter, L.G.3
Matsui, T.4
Weiss, T.M.5
Martel, A.6
Snell, E.H.7
-
78
-
-
0000070408
-
A Fourier series method for the determination of the components of interatomic distances in crystals
-
Patterson, A. L. A Fourier series method for the determination of the components of interatomic distances in crystals Phys. Rev. 1934, 46, 372-376 10.1103/PhysRev.46.372
-
(1934)
Phys. Rev.
, vol.46
, pp. 372-376
-
-
Patterson, A.L.1
-
79
-
-
16344365160
-
Scattering by an Inhomogeneous Solid
-
Debye, P.; Bueche, A. M. Scattering by an Inhomogeneous Solid J. Appl. Phys. 1949, 20, 518-525 10.1063/1.1698419
-
(1949)
J. Appl. Phys.
, vol.20
, pp. 518-525
-
-
Debye, P.1
Bueche, A.M.2
-
80
-
-
0000897622
-
A new method for the evaluation of small-angle scattering data
-
Glatter, O. A new method for the evaluation of small-angle scattering data J. Appl. Crystallogr. 1977, 10, 415-421 10.1107/S0021889877013879
-
(1977)
J. Appl. Crystallogr.
, vol.10
, pp. 415-421
-
-
Glatter, O.1
-
81
-
-
0033681249
-
Crystal and solution structures of an HslUV protease-chaperone complex
-
Sousa, M. C.; Trame, C. B.; Tsuruta, H.; Wilbanks, S. M.; Reddy, V. S.; McKay, D. B. Crystal and solution structures of an HslUV protease-chaperone complex Cell 2000, 103, 633-643 10.1016/S0092-8674(00)00166-5
-
(2000)
Cell
, vol.103
, pp. 633-643
-
-
Sousa, M.C.1
Trame, C.B.2
Tsuruta, H.3
Wilbanks, S.M.4
Reddy, V.S.5
McKay, D.B.6
-
82
-
-
34447255483
-
Escherichia coli MutS tetramerization domain structure reveals that stable dimers but not tetramers are essential for DNA mismatch repair in vivo
-
Mendillo, M. L.; Putnam, C. D.; Kolodner, R. D. Escherichia coli MutS tetramerization domain structure reveals that stable dimers but not tetramers are essential for DNA mismatch repair in vivo J. Biol. Chem. 2007, 282, 16345-16354 10.1074/jbc.M700858200
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 16345-16354
-
-
Mendillo, M.L.1
Putnam, C.D.2
Kolodner, R.D.3
-
83
-
-
29144499347
-
The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure
-
Vestergaard, B.; Sanyal, S.; Roessle, M.; Mora, L.; Buckingham, R. H.; Kastrup, J. S.; Gajhede, M.; Svergun, D. I.; Ehrenberg, M. The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure Mol. Cell 2005, 20, 929-938 10.1016/j.molcel.2005.11.022
-
(2005)
Mol. Cell
, vol.20
, pp. 929-938
-
-
Vestergaard, B.1
Sanyal, S.2
Roessle, M.3
Mora, L.4
Buckingham, R.H.5
Kastrup, J.S.6
Gajhede, M.7
Svergun, D.I.8
Ehrenberg, M.9
-
84
-
-
0036930752
-
Addition of missing loops and domains to protein models by x-ray solution scattering
-
Petoukhov, M. V.; Eady, N. A.; Brown, K. A.; Svergun, D. I. Addition of missing loops and domains to protein models by x-ray solution scattering Biophys. J. 2002, 83, 3113-3125 10.1016/S0006-3495(02)75315-0
-
(2002)
Biophys. J.
, vol.83
, pp. 3113-3125
-
-
Petoukhov, M.V.1
Eady, N.A.2
Brown, K.A.3
Svergun, D.I.4
-
85
-
-
33846839463
-
A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data
-
Schwieters, C. D.; Clore, G. M. A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data Biochemistry 2007, 46, 1152-1166 10.1021/bi061943x
-
(2007)
Biochemistry
, vol.46
, pp. 1152-1166
-
-
Schwieters, C.D.1
Clore, G.M.2
-
86
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D. I. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing Biophys. J. 1999, 76, 2879-2886 10.1016/S0006-3495(99)77443-6
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
87
-
-
33748783780
-
ELLSTAT: Shape modeling forsolution small-angle scattering of proteins and protein complexes with automated statistical characterization
-
Heller, W. T. ELLSTAT: shape modeling forsolution small-angle scattering of proteins and protein complexes with automated statistical characterization J. Appl. Crystallogr. 2006, 39, 671-675 10.1107/S0021889806029591
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 671-675
-
-
Heller, W.T.1
-
88
-
-
0034484041
-
Reconstruction of low-resolution three-dimensionaldensity maps from one-dimensional small-angle X-ray solution scattering data for biomolecules
-
Walther, D.; Cohen, F. E.; Doniach, S. Reconstruction of low-resolution three-dimensionaldensity maps from one-dimensional small-angle X-ray solution scattering data for biomolecules J. Appl. Crystallogr. 2000, 33, 350-363 10.1107/S0021889899015976
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 350-363
-
-
Walther, D.1
Cohen, F.E.2
Doniach, S.3
-
89
-
-
0029050883
-
Nuclear magnetic dipole interactions in field-oriented proteins: Information for structure determination in solution
-
Tolman, J. R.; Flanagan, J. M.; Kennedy, M. A.; Prestegard, J. H. Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution Proc. Natl. Acad. Sci. U. S. A. 1995, 92, 9279-9283 10.1073/pnas.92.20.9279
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 9279-9283
-
-
Tolman, J.R.1
Flanagan, J.M.2
Kennedy, M.A.3
Prestegard, J.H.4
-
90
-
-
84941242946
-
Solution NMR experiment for measurement of 15N-1H residual dipolar couplings in large proteins and supramolecular complexes
-
Eletsky, A.; Pulavarti, S. V.; Beaumont, V.; Gollnick, P.; Szyperski, T. Solution NMR experiment for measurement of 15N-1H residual dipolar couplings in large proteins and supramolecular complexes J. Am. Chem. Soc. 2015, 137, 11242-11245 10.1021/jacs.5b07010
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 11242-11245
-
-
Eletsky, A.1
Pulavarti, S.V.2
Beaumont, V.3
Gollnick, P.4
Szyperski, T.5
-
91
-
-
84985759981
-
The Hamiltonians of NMR Part II
-
Smith, S. A.; Palke, W. E.; Gerig, J. T. The Hamiltonians of NMR Part II Concepts Magn. Reson. 1992, 4, 181-204 10.1002/cmr.1820040302
-
(1992)
Concepts Magn. Reson.
, vol.4
, pp. 181-204
-
-
Smith, S.A.1
Palke, W.E.2
Gerig, J.T.3
-
92
-
-
25844506708
-
Weak alignment NMR: A hawk-eyed view of biomolecular structure
-
Bax, A.; Grishaev, A. Weak alignment NMR: a hawk-eyed view of biomolecular structure Curr. Opin. Struct. Biol. 2005, 15, 563-570 10.1016/j.sbi.2005.08.006
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 563-570
-
-
Bax, A.1
Grishaev, A.2
-
93
-
-
4344648452
-
Residual dipolar couplings in structure determination of biomolecules
-
Prestegard, J. H.; Bougault, C. M.; Kishore, A. I. Residual dipolar couplings in structure determination of biomolecules Chem. Rev. 2004, 104, 3519-3540 10.1021/cr030419i
-
(2004)
Chem. Rev.
, vol.104
, pp. 3519-3540
-
-
Prestegard, J.H.1
Bougault, C.M.2
Kishore, A.I.3
-
94
-
-
3042691762
-
Residual dipolar couplings in NMR structure analysis
-
Lipsitz, R. S.; Tjandra, N. Residual dipolar couplings in NMR structure analysis Annu. Rev. Biophys. Biomol. Struct. 2004, 33, 387-413 10.1146/annurev.biophys.33.110502.140306
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 387-413
-
-
Lipsitz, R.S.1
Tjandra, N.2
-
95
-
-
0030722243
-
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium
-
Tjandra, N.; Bax, A. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium Science 1997, 278, 1111-1114 10.1126/science.278.5340.1111
-
(1997)
Science
, vol.278
, pp. 1111-1114
-
-
Tjandra, N.1
Bax, A.2
-
96
-
-
0032517327
-
Measurement of residual dipolar couplings of macromolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses
-
Clore, G. M.; Starich, M. R.; Gronenborn, A. M. Measurement of residual dipolar couplings of macromolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses J. Am. Chem. Soc. 1998, 120, 10571-10572 10.1021/ja982592f
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 10571-10572
-
-
Clore, G.M.1
Starich, M.R.2
Gronenborn, A.M.3
-
97
-
-
0032177257
-
Improved dilute bicelle solutions for high-resolution NMR of biological macromolecules
-
Losonczi, J. A.; Prestegard, J. H. Improved dilute bicelle solutions for high-resolution NMR of biological macromolecules J. Biomol. NMR 1998, 12, 447-451 10.1023/A:1008302110884
-
(1998)
J. Biomol. NMR
, vol.12
, pp. 447-451
-
-
Losonczi, J.A.1
Prestegard, J.H.2
-
98
-
-
0034130999
-
Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions
-
Hansen, M. R.; Hanson, P.; Pardi, A. Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions Methods Enzymol. 2000, 317, 220-240 10.1016/S0076-6879(00)17017-X
-
(2000)
Methods Enzymol.
, vol.317
, pp. 220-240
-
-
Hansen, M.R.1
Hanson, P.2
Pardi, A.3
-
100
-
-
0034501042
-
Solution NMR of proteins within polyacrylamide gels: Diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes
-
Sass, H. J.; Musco, G.; Stahl, S. J.; Wingfield, P. T.; Grzesiek, S. Solution NMR of proteins within polyacrylamide gels: diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes J. Biomol. NMR 2000, 18, 303-309 10.1023/A:1026703605147
-
(2000)
J. Biomol. NMR
, vol.18
, pp. 303-309
-
-
Sass, H.J.1
Musco, G.2
Stahl, S.J.3
Wingfield, P.T.4
Grzesiek, S.5
-
101
-
-
0035478774
-
Partial alignment of biomolecules: An aid to NMR characterization
-
Prestegard, J. H.; Kishore, A. I. Partial alignment of biomolecules: an aid to NMR characterization Curr. Opin. Chem. Biol. 2001, 5, 584-590 10.1016/S1367-5931(00)00247-7
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 584-590
-
-
Prestegard, J.H.1
Kishore, A.I.2
-
102
-
-
0034919243
-
Dipolar couplings in macromolecular structure determination
-
Bax, A.; Kontaxis, G.; Tjandra, N. Dipolar couplings in macromolecular structure determination Methods Enzymol. 2001, 339, 127-174 10.1016/S0076-6879(01)39313-8
-
(2001)
Methods Enzymol.
, vol.339
, pp. 127-174
-
-
Bax, A.1
Kontaxis, G.2
Tjandra, N.3
-
103
-
-
84896293788
-
Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase
-
Maltsev, A. S.; Grishaev, A.; Roche, J.; Zasloff, M.; Bax, A. Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase J. Am. Chem. Soc. 2014, 136, 3752-3755 10.1021/ja4132642
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 3752-3755
-
-
Maltsev, A.S.1
Grishaev, A.2
Roche, J.3
Zasloff, M.4
Bax, A.5
-
104
-
-
0031760503
-
Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions
-
Hansen, M. R.; Mueller, L.; Pardi, A. Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions Nat. Struct. Biol. 1998, 5, 1065-1074 10.1038/4176
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 1065-1074
-
-
Hansen, M.R.1
Mueller, L.2
Pardi, A.3
-
105
-
-
0035692486
-
A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles
-
Chou, J. J.; Gaemers, S.; Howder, B.; Louis, J. M.; Bax, A. A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles J. Biomol. NMR 2001, 21, 377-382 10.1023/A:1013336502594
-
(2001)
J. Biomol. NMR
, vol.21
, pp. 377-382
-
-
Chou, J.J.1
Gaemers, S.2
Howder, B.3
Louis, J.M.4
Bax, A.5
-
106
-
-
0034721465
-
Alignment of biopolymers in strained gels: A new way to create detectable dipole-dipole couplings in high-resolution biomolecular NMR
-
Tycko, R.; Blanco, F. J.; Y, I. Alignment of biopolymers in strained gels: a new way to create detectable dipole-dipole couplings in high-resolution biomolecular NMR J. Am. Chem. Soc. 2000, 122, 9340-9341 10.1021/ja002133q
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 9340-9341
-
-
Tycko, R.1
Blanco, F.J.2
-
107
-
-
0042367594
-
Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy
-
Ulmer, T. S.; Ramirez, B. E.; Delaglio, F.; Bax, A. Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy J. Am. Chem. Soc. 2003, 125, 9179-9191 10.1021/ja0350684
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 9179-9191
-
-
Ulmer, T.S.1
Ramirez, B.E.2
Delaglio, F.3
Bax, A.4
-
108
-
-
0035591656
-
Residual Dipolar Couplings in Protein NMR
-
Brunner, E. Residual Dipolar Couplings in Protein NMR Concepts Magn. Reson. 2001, 13, 238-259 10.1002/cmr.1012
-
(2001)
Concepts Magn. Reson.
, vol.13
, pp. 238-259
-
-
Brunner, E.1
-
109
-
-
0032042263
-
Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra
-
Ottiger, M.; Delaglio, F.; Bax, A. Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra J. Magn. Reson. 1998, 131, 373-378 10.1006/jmre.1998.1361
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 373-378
-
-
Ottiger, M.1
Delaglio, F.2
Bax, A.3
-
110
-
-
0034132563
-
Direct refinement against proton-proton dipolar couplings in NMR structure determination of macromolecules
-
Tjandra, N.; Marquardt, J.; Clore, G. M. Direct refinement against proton-proton dipolar couplings in NMR structure determination of macromolecules J. Magn. Reson. 2000, 142, 393-396 10.1006/jmre.1999.1985
-
(2000)
J. Magn. Reson.
, vol.142
, pp. 393-396
-
-
Tjandra, N.1
Marquardt, J.2
Clore, G.M.3
-
111
-
-
0034993445
-
Multiplet component separation for measurement of methyl 13C-1H dipolar couplings in weakly aligned proteins
-
Kontaxis, G.; Bax, A. Multiplet component separation for measurement of methyl 13C-1H dipolar couplings in weakly aligned proteins J. Biomol. NMR 2001, 20, 77-82 10.1023/A:1011280529850
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 77-82
-
-
Kontaxis, G.1
Bax, A.2
-
113
-
-
0142260977
-
15N using a simple HNCA-based experiment
-
15N using a simple HNCA-based experiment J. Biomol. NMR 2003, 27, 341-349 10.1023/A:1025866606252
-
(2003)
J. Biomol. NMR
, vol.27
, pp. 341-349
-
-
Permi, P.1
-
114
-
-
43649105118
-
Protein backbone motions viewed by intraresidue and sequential HN-Hα residual dipolar couplings
-
Vogeli, B.; Yao, L.; Bax, A. Protein backbone motions viewed by intraresidue and sequential HN-Hα residual dipolar couplings J. Biomol. NMR 2008, 41, 17-28 10.1007/s10858-008-9237-3
-
(2008)
J. Biomol. NMR
, vol.41
, pp. 17-28
-
-
Vogeli, B.1
Yao, L.2
Bax, A.3
-
115
-
-
0030018695
-
15N-Enriched Human Ubiquitin Resulting from Relaxation Interference and Residual Dipolar Coupling
-
15N-Enriched Human Ubiquitin Resulting from Relaxation Interference and Residual Dipolar Coupling J. Am. Chem. Soc. 1996, 118, 6264-6272 10.1021/ja960106n
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 6264-6272
-
-
Tjandra, N.1
Grzesiek, S.2
Bax, A.3
-
116
-
-
0030730170
-
13Cα chemical shift anisotropy in proteins correlate with secondary structure
-
13Cα chemical shift anisotropy in proteins correlate with secondary structure J. Am. Chem. Soc. 1997, 119, 9576-9577 10.1021/ja9721374
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 9576-9577
-
-
Tjandra, N.1
Bax, A.2
-
117
-
-
0028673482
-
Measurement of homo- and heteronuclear J couplings from quantitative J correlation
-
Bax, A.; Vuister, G. W.; Grzesiek, S.; Delaglio, F.; Wang, A. C.; Tschudin, R.; Zhu, G. Measurement of homo- and heteronuclear J couplings from quantitative J correlation Methods Enzymol. 1994, 239, 79-105 10.1016/S0076-6879(94)39004-5
-
(1994)
Methods Enzymol.
, vol.239
, pp. 79-105
-
-
Bax, A.1
Vuister, G.W.2
Grzesiek, S.3
Delaglio, F.4
Wang, A.C.5
Tschudin, R.6
Zhu, G.7
-
118
-
-
68049084585
-
Measurement of one and two bond N-C couplings in large proteins by TROSY-based J-modulation experiments
-
Liu, Y.; Prestegard, J. H. Measurement of one and two bond N-C couplings in large proteins by TROSY-based J-modulation experiments J. Magn. Reson. 2009, 200, 109-118 10.1016/j.jmr.2009.06.010
-
(2009)
J. Magn. Reson.
, vol.200
, pp. 109-118
-
-
Liu, Y.1
Prestegard, J.H.2
-
119
-
-
78149362336
-
15N residual dipolar couplings in larger perdeuterated proteins
-
15N residual dipolar couplings in larger perdeuterated proteins J. Biomol. NMR 2010, 48, 65-70 10.1007/s10858-010-9441-9
-
(2010)
J. Biomol. NMR
, vol.48
, pp. 65-70
-
-
Fitzkee, N.C.1
Bax, A.2
-
120
-
-
0030589148
-
Selective methyl group protonation of perdeuterated proteins
-
Rosen, M. K.; Gardner, K. H.; Willis, R. C.; Parris, W. E.; Pawson, T.; Kay, L. E. Selective methyl group protonation of perdeuterated proteins J. Mol. Biol. 1996, 263, 627-636 10.1006/jmbi.1996.0603
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 627-636
-
-
Rosen, M.K.1
Gardner, K.H.2
Willis, R.C.3
Parris, W.E.4
Pawson, T.5
Kay, L.E.6
-
121
-
-
0031595590
-
15N multidimensional NMR to study the structure and dynamics of proteins
-
15N multidimensional NMR to study the structure and dynamics of proteins Annu. Rev. Biophys. Biomol. Struct. 1998, 27, 357-406 10.1146/annurev.biophys.27.1.357
-
(1998)
Annu. Rev. Biophys. Biomol. Struct.
, vol.27
, pp. 357-406
-
-
Gardner, K.H.1
Kay, L.E.2
-
122
-
-
78650588910
-
Alanine methyl groups as NMR probes of molecular structure and dynamics in high-molecular-weight proteins
-
Godoy-Ruiz, R.; Guo, C.; Tugarinov, V. Alanine methyl groups as NMR probes of molecular structure and dynamics in high-molecular-weight proteins J. Am. Chem. Soc. 2010, 132, 18340-18350 10.1021/ja1083656
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 18340-18350
-
-
Godoy-Ruiz, R.1
Guo, C.2
Tugarinov, V.3
-
123
-
-
84943353072
-
Methyl labeling and TROSY NMR spectroscopy of proteins expressed in the eukaryote Pichia pastoris
-
Clark, L.; Zahm, J. A.; Ali, R.; Kukula, M.; Bian, L.; Patrie, S. M.; Gardner, K. H.; Rosen, M. K.; Rosenbaum, D. M. Methyl labeling and TROSY NMR spectroscopy of proteins expressed in the eukaryote Pichia pastoris J. Biomol. NMR 2015, 62, 239-245 10.1007/s10858-015-9939-2
-
(2015)
J. Biomol. NMR
, vol.62
, pp. 239-245
-
-
Clark, L.1
Zahm, J.A.2
Ali, R.3
Kukula, M.4
Bian, L.5
Patrie, S.M.6
Gardner, K.H.7
Rosen, M.K.8
Rosenbaum, D.M.9
-
124
-
-
0242267427
-
Methyl TROSY: Explaination and experimental verification
-
Ollerenshaw, J. E.; Tugarinov, V.; Kay, L. E. Methyl TROSY: explaination and experimental verification Magn. Reson. Chem. 2003, 41, 843-852 10.1002/mrc.1256
-
(2003)
Magn. Reson. Chem.
, vol.41
, pp. 843-852
-
-
Ollerenshaw, J.E.1
Tugarinov, V.2
Kay, L.E.3
-
125
-
-
0041930989
-
13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes
-
13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes J. Am. Chem. Soc. 2003, 125, 10420-10428 10.1021/ja030153x
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10420-10428
-
-
Tugarinov, V.1
Hwang, P.M.2
Ollerenshaw, J.E.3
Kay, L.E.4
-
127
-
-
0032113480
-
A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information
-
Clore, G. M.; Gronenborn, A. M.; Bax, A. A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information J. Magn. Reson. 1998, 133, 216-221 10.1006/jmre.1998.1419
-
(1998)
J. Magn. Reson.
, vol.133
, pp. 216-221
-
-
Clore, G.M.1
Gronenborn, A.M.2
Bax, A.3
-
128
-
-
0034856481
-
Application of dipolar coupling data to the refinement of the solution structure of the sarcin-ricin loop RNA
-
Warren, J. J.; Moore, P. B. Application of dipolar coupling data to the refinement of the solution structure of the sarcin-ricin loop RNA J. Biomol. NMR 2001, 20, 311-323 10.1023/A:1011214214552
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 311-323
-
-
Warren, J.J.1
Moore, P.B.2
-
129
-
-
0032879507
-
R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures
-
Clore, G. M.; Garrett, D. S. R-factor, free R, and complete cross-validation for dipolar coupling re
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9008-9012
-
-
Clore, G.M.1
Garrett, D.S.2
|