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Volumn 232, Issue , 2016, Pages 50-60

Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment

Author keywords

Comparative genome analyses; Sugar utilization; Thermophilic Bacteria; Thermotogae

Indexed keywords

ANAEROBIC DIGESTION; BACTERIA; BIOGAS; CARBON; CARBON DIOXIDE; FERMENTATION; GENETIC ENGINEERING; MICROORGANISMS;

EID: 84969577602     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2016.05.001     Document Type: Article
Times cited : (58)

References (72)
  • 1
    • 84969378090 scopus 로고    scopus 로고
    • FastQC Blog: A Quality Control Tool for High Throughput Sequence Data
    • (accessed: 15.10.09)
    • Andrews, S., FastQC Blog: A Quality Control Tool for High Throughput Sequence Data. 2015 (accessed: 15.10.09) http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
    • (2015)
    • Andrews, S.1
  • 2
    • 0036021956 scopus 로고    scopus 로고
    • Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor
    • Balk, M., Weijma, J., Stams, A.J., Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int. J. Syst. Evol. Microbiol. 52:Pt. 4 (2002), 1361–1368.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1361-1368
    • Balk, M.1    Weijma, J.2    Stams, A.J.3
  • 3
    • 84855351669 scopus 로고    scopus 로고
    • Effect of continuous oleate addition on microbial communities involved in anaerobic digestion process
    • Baserba, M.G., Angelidaki, I., Karakashev, D., Effect of continuous oleate addition on microbial communities involved in anaerobic digestion process. Bioresour. Technol. 106 (2012), 74–81.
    • (2012) Bioresour. Technol. , vol.106 , pp. 74-81
    • Baserba, M.G.1    Angelidaki, I.2    Karakashev, D.3
  • 4
    • 0022541209 scopus 로고
    • A new sulfur-reducing, extremely thermophilic eubacterium from a submarine thermal vent
    • Belkin, S., Wirsen, C.O., Jannasch, H.W., A new sulfur-reducing, extremely thermophilic eubacterium from a submarine thermal vent. Appl. Environ. Microbiol. 51:6 (1986), 1180–1185.
    • (1986) Appl. Environ. Microbiol. , vol.51 , Issue.6 , pp. 1180-1185
    • Belkin, S.1    Wirsen, C.O.2    Jannasch, H.W.3
  • 5
    • 84861870953 scopus 로고    scopus 로고
    • Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester
    • Ben Hania, W., Godbane, R., Postec, A., Hamdi, M., Ollivier, B., Fardeau, M.L., Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester. Int. J. Syst. Evol. Microbiol. 62:Pt. 6 (2012), 1377–1382.
    • (2012) Int. J. Syst. Evol. Microbiol. , vol.62 , pp. 1377-1382
    • Ben Hania, W.1    Godbane, R.2    Postec, A.3    Hamdi, M.4    Ollivier, B.5    Fardeau, M.L.6
  • 6
    • 84892815195 scopus 로고    scopus 로고
    • Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations
    • Bhandari, V., Gupta, R.S., Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations. Antonie Van Leeuwenhoek 105:1 (2014), 143–168.
    • (2014) Antonie Van Leeuwenhoek , vol.105 , Issue.1 , pp. 143-168
    • Bhandari, V.1    Gupta, R.S.2
  • 9
    • 84966441496 scopus 로고    scopus 로고
    • BBMap: Short Read Aligner and Other Bioinformatic Tools
    • (accessed 19.02.14)
    • Bushnell, B., BBMap: Short Read Aligner and Other Bioinformatic Tools. 2015 (accessed 19.02.14) http://sourceforge.net/projects/bbmap/.
    • (2015)
    • Bushnell, B.1
  • 12
    • 79955123608 scopus 로고    scopus 로고
    • Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups
    • Cupta, S., Bhandari, V., Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups. Antonie Van Leeuwenhoek 100:1 (2011), 1–34.
    • (2011) Antonie Van Leeuwenhoek , vol.100 , Issue.1 , pp. 1-34
    • Cupta, S.1    Bhandari, V.2
  • 13
    • 84928315371 scopus 로고    scopus 로고
    • Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
    • Medium 287 (28.04.13)
    • DSMZ, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH. 2007, Medium 287 (28.04.13) http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium287.pdf.
    • (2007)
    • DSMZ1
  • 14
    • 84979659956 scopus 로고    scopus 로고
    • Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
    • Medium 141 (28.04.13)
    • DSMZ, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH. 2012, Medium 141 (28.04.13) http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium141.pdf.
    • (2012)
    • DSMZ1
  • 15
    • 33645313846 scopus 로고    scopus 로고
    • Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences
    • DeBoy, R.T., Mongodin, E.F., Emerson, J.B., Nelson, K.E., Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences. J. Bacteriol. 188:7 (2006), 2364–2374.
    • (2006) J. Bacteriol. , vol.188 , Issue.7 , pp. 2364-2374
    • DeBoy, R.T.1    Mongodin, E.F.2    Emerson, J.B.3    Nelson, K.E.4
  • 16
    • 0742287185 scopus 로고    scopus 로고
    • Cupins: the most functionally diverse protein superfamily?
    • Dunwell, J.M., Purvis, A., Khuri, S., Cupins: the most functionally diverse protein superfamily?. Phytochemistry 65:1 (2004), 7–17.
    • (2004) Phytochemistry , vol.65 , Issue.1 , pp. 7-17
    • Dunwell, J.M.1    Purvis, A.2    Khuri, S.3
  • 17
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C., MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004), 1792–1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 18
    • 84966322209 scopus 로고    scopus 로고
    • Molecular and biochemical characterization of bifunctional pyruvate decarboxylases and pyruvate ferredoxin oxidoreductases from Thermotoga maritima and Thermotoga hypogea
    • Eram, M.S., Wong, A., Oduaran, E., Ma, K., Molecular and biochemical characterization of bifunctional pyruvate decarboxylases and pyruvate ferredoxin oxidoreductases from Thermotoga maritima and Thermotoga hypogea. J. Biochem. 158:6 (2015), 459–466.
    • (2015) J. Biochem. , vol.158 , Issue.6 , pp. 459-466
    • Eram, M.S.1    Wong, A.2    Oduaran, E.3    Ma, K.4
  • 20
    • 0000122573 scopus 로고
    • PHYLIP – phylogeny inference package
    • (Version 3.2)
    • Felsenstein, J., PHYLIP – phylogeny inference package. Cladistics 5 (1989), 164–166 (Version 3.2).
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 21
    • 77953767555 scopus 로고    scopus 로고
    • The genus Thermotoga: recent developments
    • Frock, A.D., Notey, J.S., Kelly, R.M., The genus Thermotoga: recent developments. Environ. Technol. 31:10 (2010), 1169–1181.
    • (2010) Environ. Technol. , vol.31 , Issue.10 , pp. 1169-1181
    • Frock, A.D.1    Notey, J.S.2    Kelly, R.M.3
  • 22
    • 84857803390 scopus 로고    scopus 로고
    • Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases
    • Frock, A.D., Gray, S.R., Kelly, R.M., Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases. Appl. Environ. Microbiol. 78:6 (2012), 1978–1986.
    • (2012) Appl. Environ. Microbiol. , vol.78 , Issue.6 , pp. 1978-1986
    • Frock, A.D.1    Gray, S.R.2    Kelly, R.M.3
  • 23
    • 84875850627 scopus 로고    scopus 로고
    • Metabolism of oligosaccharides and starch in Lactobacilli: a review
    • Gänzle, M.G., Follador, R., Metabolism of oligosaccharides and starch in Lactobacilli: a review. Front. Microbiol., 3, 2012, 340.
    • (2012) Front. Microbiol. , vol.3 , pp. 340
    • Gänzle, M.G.1    Follador, R.2
  • 25
    • 0342391548 scopus 로고
    • Conformation of the tetrasaccharide stachyose
    • Gilardi, R.D., Flippen, J.L., Conformation of the tetrasaccharide stachyose. J. Am. Chem. Soc. 97:21 (1975), 6264–6266.
    • (1975) J. Am. Chem. Soc. , vol.97 , Issue.21 , pp. 6264-6266
    • Gilardi, R.D.1    Flippen, J.L.2
  • 26
    • 84902503930 scopus 로고    scopus 로고
    • Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor
    • Hahnke, S., Striesow, J., Elvert, M., Mollar, X.P., Klocke, M., Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor. Int. J. Syst. Evol. Microbiol. 64:Pt. 8 (2014), 2792–2797.
    • (2014) Int. J. Syst. Evol. Microbiol. , vol.64 , pp. 2792-2797
    • Hahnke, S.1    Striesow, J.2    Elvert, M.3    Mollar, X.P.4    Klocke, M.5
  • 27
    • 84879603340 scopus 로고    scopus 로고
    • Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation
    • Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Pühler, A., Reichl, U., Klocke, M., Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Syst. Appl. Microbiol. 36:5 (2013), 330–338.
    • (2013) Syst. Appl. Microbiol. , vol.36 , Issue.5 , pp. 330-338
    • Hanreich, A.1    Schimpf, U.2    Zakrzewski, M.3    Schlüter, A.4    Benndorf, D.5    Heyer, R.6    Rapp, E.7    Pühler, A.8    Reichl, U.9    Klocke, M.10
  • 28
    • 0022522022 scopus 로고
    • Thermotoga maritima sp: nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C
    • Huber, R., Langworthy, T.A., König, H., Thomm, M., Woese, C.R., Sleytr, W., Stetter, K.O., Thermotoga maritima sp: nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C. Arch. Microbiol. 144 (1986), 324–333.
    • (1986) Arch. Microbiol. , vol.144 , pp. 324-333
    • Huber, R.1    Langworthy, T.A.2    König, H.3    Thomm, M.4    Woese, C.R.5    Sleytr, W.6    Stetter, K.O.7
  • 30
    • 33644865270 scopus 로고    scopus 로고
    • The Thermotoga maritima phenotype is impacted by syntrophic interaction with Methanococcus jannaschii in hyperthermophilic coculture
    • Johnson, M.R., Conners, S.B., Montero, C.I., Chou, C.J., Shockley, K.R., Kelly, R.M., The Thermotoga maritima phenotype is impacted by syntrophic interaction with Methanococcus jannaschii in hyperthermophilic coculture. Appl. Environ. Microbiol. 72:1 (2006), 811–818.
    • (2006) Appl. Environ. Microbiol. , vol.72 , Issue.1 , pp. 811-818
    • Johnson, M.R.1    Conners, S.B.2    Montero, C.I.3    Chou, C.J.4    Shockley, K.R.5    Kelly, R.M.6
  • 31
    • 77957740755 scopus 로고    scopus 로고
    • Plant cell walls
    • Keegstra, K., Plant cell walls. Plant Physiol. 154:2 (2010), 483–486.
    • (2010) Plant Physiol. , vol.154 , Issue.2 , pp. 483-486
    • Keegstra, K.1
  • 32
    • 0032714186 scopus 로고    scopus 로고
    • Physiological aspects of chitin catabolism in marine bacteria
    • Keyhani, N.O., Roseman, S., Physiological aspects of chitin catabolism in marine bacteria. Biochim. Biophys. Acta 1473:1 (1999), 108–122.
    • (1999) Biochim. Biophys. Acta , vol.1473 , Issue.1 , pp. 108-122
    • Keyhani, N.O.1    Roseman, S.2
  • 33
    • 84903739281 scopus 로고    scopus 로고
    • Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: genetic markers and characterization of cellulolytic potential
    • Koeck, D.E., Zverlov, V.V., Liebl, W., Schwarz, W.H., Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: genetic markers and characterization of cellulolytic potential. Syst. Appl. Microbiol. 37:5 (2014), 311–319.
    • (2014) Syst. Appl. Microbiol. , vol.37 , Issue.5 , pp. 311-319
    • Koeck, D.E.1    Zverlov, V.V.2    Liebl, W.3    Schwarz, W.H.4
  • 34
    • 67349232764 scopus 로고    scopus 로고
    • Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
    • Kröber, M., Bekel, T., Diaz, N.N., Goesmann, A., Jaenicke, S., Krause, L., Miller, D., Runte, K.J., Viehöver, P., Pühler, A., Schlüter, A., Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J. Biotechnol. 142:1 (2009), 38–49.
    • (2009) J. Biotechnol. , vol.142 , Issue.1 , pp. 38-49
    • Kröber, M.1    Bekel, T.2    Diaz, N.N.3    Goesmann, A.4    Jaenicke, S.5    Krause, L.6    Miller, D.7    Runte, K.J.8    Viehöver, P.9    Pühler, A.10    Schlüter, A.11
  • 35
    • 79955001056 scopus 로고    scopus 로고
    • Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage
    • Krakat, N., Schmidt, S., Scherer, P., Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage. Bioresour. Technol. 102:10 (2011), 5692–5701.
    • (2011) Bioresour. Technol. , vol.102 , Issue.10 , pp. 5692-5701
    • Krakat, N.1    Schmidt, S.2    Scherer, P.3
  • 37
    • 84928807849 scopus 로고    scopus 로고
    • Engineering Saccharomyces pastorianus for the co-utilisation of xylose and cellulose from biomass
    • Kricka, W., James, T.C., Fitzpatrick, J., Bond, U., Engineering Saccharomyces pastorianus for the co-utilisation of xylose and cellulose from biomass. Microb. Cell Fact., 14, 2015, 61.
    • (2015) Microb. Cell Fact. , vol.14 , pp. 61
    • Kricka, W.1    James, T.C.2    Fitzpatrick, J.3    Bond, U.4
  • 38
    • 84890523071 scopus 로고    scopus 로고
    • Kosmotoga pacifica sp. nov., a thermophilic chemoorganoheterotrophic bacterium isolated from an East Pacific hydrothermal sediment
    • L'Haridon, S., Jiang, L., Alain, K., Chalopin, M., Rouxel, O., Beauverger, M., Xu, H., Shao, Z., Jebbar, M., Kosmotoga pacifica sp. nov., a thermophilic chemoorganoheterotrophic bacterium isolated from an East Pacific hydrothermal sediment. Extremophiles 18:1 (2014), 81–88.
    • (2014) Extremophiles , vol.18 , Issue.1 , pp. 81-88
    • L'Haridon, S.1    Jiang, L.2    Alain, K.3    Chalopin, M.4    Rouxel, O.5    Beauverger, M.6    Xu, H.7    Shao, Z.8    Jebbar, M.9
  • 39
    • 84902378982 scopus 로고    scopus 로고
    • Towards molecular biomarkers for biogas production from lignocellulose-rich substrates
    • Lebuhn, M., Hanreich, A., Klocke, M., Schlüter, A., Bauer, C., Pérez, C.M., Towards molecular biomarkers for biogas production from lignocellulose-rich substrates. Anaerobe 29 (2014), 10–21.
    • (2014) Anaerobe , vol.29 , pp. 10-21
    • Lebuhn, M.1    Hanreich, A.2    Klocke, M.3    Schlüter, A.4    Bauer, C.5    Pérez, C.M.6
  • 40
    • 84979683572 scopus 로고    scopus 로고
    • GitHub Repository: Toolkit for Processing Sequences in FASTA/Q Formats
    • (accessed 19.11.15)
    • Li, H., GitHub Repository: Toolkit for Processing Sequences in FASTA/Q Formats. 2015 (accessed 19.11.15) https://github.com/lh3/seqtk/.
    • (2015)
    • Li, H.1
  • 41
    • 0031875158 scopus 로고    scopus 로고
    • Petrotoga mobilis sp. nov., from a North Sea oil-production well
    • Lien, T., Madsen, M., Rainey, F.A., Birkeland, N.K., Petrotoga mobilis sp. nov., from a North Sea oil-production well. Int. J. Syst. Bacteriol. 48:3 (1998), 1007–1013.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , Issue.3 , pp. 1007-1013
    • Lien, T.1    Madsen, M.2    Rainey, F.A.3    Birkeland, N.K.4
  • 43
    • 84925387126 scopus 로고    scopus 로고
    • Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
    • Maus, I., Cibis, K.G., Wibberg, D., Winkler, A., Stolze, Y., König, H., Pühler, A., Schlüter, A., Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. J. Biotechnol. 203 (2015), 17–18.
    • (2015) J. Biotechnol. , vol.203 , pp. 17-18
    • Maus, I.1    Cibis, K.G.2    Wibberg, D.3    Winkler, A.4    Stolze, Y.5    König, H.6    Pühler, A.7    Schlüter, A.8
  • 44
    • 0037469604 scopus 로고    scopus 로고
    • Methanogenic population structure in a variety of anaerobic bioreactors
    • McHugh, S., Carton, M., Mahony, T., O'Flaherty, V., Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol. Lett. 219:2 (2003), 297–304.
    • (2003) FEMS Microbiol. Lett. , vol.219 , Issue.2 , pp. 297-304
    • McHugh, S.1    Carton, M.2    Mahony, T.3    O'Flaherty, V.4
  • 48
    • 79958154818 scopus 로고    scopus 로고
    • FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
    • Niu, B., Zhu, Z., Fu, L., Wu, S., Li, W., FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes. Bioinformatics 27:12 (2011), 1704–1705.
    • (2011) Bioinformatics , vol.27 , Issue.12 , pp. 1704-1705
    • Niu, B.1    Zhu, Z.2    Fu, L.3    Wu, S.4    Li, W.5
  • 49
    • 84889262795 scopus 로고    scopus 로고
    • Trehalose-6-phosphate: connecting plant metabolism and development
    • Ponnu, J., Wahl, V., Schmid, M., Trehalose-6-phosphate: connecting plant metabolism and development. Front. Plant Sci., 2, 2011, 70.
    • (2011) Front. Plant Sci. , vol.2 , pp. 70
    • Ponnu, J.1    Wahl, V.2    Schmid, M.3
  • 53
    • 0000864717 scopus 로고    scopus 로고
    • Phylum BII. Thermotogae phy.
    • D.R. Boone R.W. Castenholz Springer Inc. Berlin
    • Reysenbach, A.L., Phylum BII. Thermotogae phy. Boone, D.R., Castenholz, R.W., (eds.) Bergey's Manual of Systematic Bacteriology, 2001, Springer Inc., Berlin, 369–387.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 369-387
    • Reysenbach, A.L.1
  • 58
  • 59
    • 84903815874 scopus 로고    scopus 로고
    • Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium
    • Stantscheff, R., Kuever, J., Rabenstaein, A., Seyfarth, K., Dröge, S., König, H., Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium. Appl. Microbiol. Biotechnol. 98:12 (2014), 5719–5735.
    • (2014) Appl. Microbiol. Biotechnol. , vol.98 , Issue.12 , pp. 5719-5735
    • Stantscheff, R.1    Kuever, J.2    Rabenstaein, A.3    Seyfarth, K.4    Dröge, S.5    König, H.6
  • 60
    • 84924046414 scopus 로고    scopus 로고
    • Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
    • Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F., Jaenicke, S., Rottmann, N., Siebner, C., Pühler, A., Schlüter, A., Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnol. Biofuels, 8, 2015, 14.
    • (2015) Biotechnol. Biofuels , vol.8 , pp. 14
    • Stolze, Y.1    Zakrzewski, M.2    Maus, I.3    Eikmeyer, F.4    Jaenicke, S.5    Rottmann, N.6    Siebner, C.7    Pühler, A.8    Schlüter, A.9
  • 61
    • 0034815472 scopus 로고    scopus 로고
    • Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan
    • Takahata, Y., Nishijima, M., Hoaki, T., Maruyama, T., Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Int. J. Syst. Evol. Microbiol. 51:Pt. 5 (2001), 1901–1909.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1901-1909
    • Takahata, Y.1    Nishijima, M.2    Hoaki, T.3    Maruyama, T.4
  • 62
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M., Kumar, S., MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:8 (2007), 1596–1599.
    • (2007) Mol. Biol. Evol. , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 63
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R.L., Galperin, M.Y., Natale, D.A., Koonin, E.V., The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28 (2000), 33–36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 65
    • 0034645778 scopus 로고    scopus 로고
    • Maltose-binding protein from the hyperthermophilic bacterium Thermotoga maritima: stability and binding properties
    • Wassenberg, D., Liebl, W., Jaenicke, R., Maltose-binding protein from the hyperthermophilic bacterium Thermotoga maritima: stability and binding properties. J. Mol. Biol. 295:2 (2000), 279–288.
    • (2000) J. Mol. Biol. , vol.295 , Issue.2 , pp. 279-288
    • Wassenberg, D.1    Liebl, W.2    Jaenicke, R.3
  • 66
    • 0034870301 scopus 로고    scopus 로고
    • Pectin: cell biology and prospects for functional analysis
    • Willats, W.G., McCartney, L., Mackie, W., Knox, J.P., Pectin: cell biology and prospects for functional analysis. Plant Mol. Biol. 47:1–2 (2001), 9–27.
    • (2001) Plant Mol. Biol. , vol.47 , Issue.1-2 , pp. 9-27
    • Willats, W.G.1    McCartney, L.2    Mackie, W.3    Knox, J.P.4
  • 67
    • 0028901697 scopus 로고
    • Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima
    • Winterhalter, C., Heinrich, P., Candussio, A., Wich, G., Liebl, W., Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima. Mol. Microbiol. 15:3 (1995), 431–444.
    • (1995) Mol. Microbiol. , vol.15 , Issue.3 , pp. 431-444
    • Winterhalter, C.1    Heinrich, P.2    Candussio, A.3    Wich, G.4    Liebl, W.5
  • 68
    • 80052606131 scopus 로고    scopus 로고
    • WebMGA: a customizable web server for fast metagenomic sequence analysis
    • Wu, S., Zhu, Z., Fu, L., Niu, B., Li, W., WebMGA: a customizable web server for fast metagenomic sequence analysis. BMC Genomics, 12, 2011, 444.
    • (2011) BMC Genomics , vol.12 , pp. 444
    • Wu, S.1    Zhu, Z.2    Fu, L.3    Niu, B.4    Li, W.5
  • 69
    • 84864442502 scopus 로고    scopus 로고
    • dbCAN: a web resource for automated carbohydrate-active enzyme annotation
    • (Web Server issue)
    • Yin, Y., Mao, X., Yang, J., Chen, X., Mao, F., Xu, Y., dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40 (2012), W445–W451 (Web Server issue).
    • (2012) Nucleic Acids Res. , vol.40 , pp. W445-W451
    • Yin, Y.1    Mao, X.2    Yang, J.3    Chen, X.4    Mao, F.5    Xu, Y.6
  • 72
    • 0036836415 scopus 로고    scopus 로고
    • Distinctive properties of high hydrogen producing extreme thermophiles: caldicellulosiruptor saccharolyticus and Thermotoga elfii
    • van Niel, E., Budde, M., de Haas, G., van der Wal, F., Claasen, P., Stams, A., Distinctive properties of high hydrogen producing extreme thermophiles: caldicellulosiruptor saccharolyticus and Thermotoga elfii. Int. J. Hydrogen Energy 27 (2002), 1391–1398.
    • (2002) Int. J. Hydrogen Energy , vol.27 , pp. 1391-1398
    • van Niel, E.1    Budde, M.2    de Haas, G.3    van der Wal, F.4    Claasen, P.5    Stams, A.6


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