메뉴 건너뛰기




Volumn 4, Issue AUG, 2013, Pages

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

Author keywords

Carbohydrate metabolism; Comparative genomics; Regulon; Thermotoga; Transcriptional regulation

Indexed keywords

ABC TRANSPORTER; ARABINOSE; BETA GALACTOSIDASE; CARBOHYDRATE; CELLOBIOSE; GALACTOSE; GLUCOSE; PECTIN; REGULATOR PROTEIN; RHAMNOSE; RIBOSE; TRANSCRIPTION FACTOR; TREHALOSE; XYLAN; XYLOSE;

EID: 84884247784     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00244     Document Type: Article
Times cited : (40)

References (43)
  • 1
    • 0036021956 scopus 로고    scopus 로고
    • Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor
    • doi: 10.1099/ijs.0.02165-0
    • Balk, M., Weijma, J., and Stams, A. J. (2002). Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int. J. Syst. Evol. Microbiol. 52, 1361-1368. doi: 10.1099/ijs.0.02165-0
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1361-1368
    • Balk, M.1    Weijma, J.2    Stams, A.J.3
  • 2
    • 80052808118 scopus 로고    scopus 로고
    • Ligands of thermophilic ABC transporters encoded in a newly sequenced genomic region of Thermotoga maritima MSB8 screened by differential scanning fluorimetry
    • doi: 10.1128/AEM.05418-11
    • Boucher, N., and Noll, K. M. (2011). Ligands of thermophilic ABC transporters encoded in a newly sequenced genomic region of Thermotoga maritima MSB8 screened by differential scanning fluorimetry. Appl. Environ. Microbiol. 77, 6395-6399. doi: 10.1128/AEM.05418-11
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 6395-6399
    • Boucher, N.1    Noll, K.M.2
  • 3
    • 0037470149 scopus 로고    scopus 로고
    • Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
    • doi: 10.1074/jbc.M211748200
    • Chhabra, S. R., Shockley, K. R., Conners, S. B., Scott, K. L., Wolfinger, R. D., and Kelly, R. M. (2003). Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Biol. Chem. 278, 7540-7552. doi: 10.1074/jbc.M211748200
    • (2003) J. Biol. Chem. , vol.278 , pp. 7540-7552
    • Chhabra, S.R.1    Shockley, K.R.2    Conners, S.B.3    Scott, K.L.4    Wolfinger, R.D.5    Kelly, R.M.6
  • 4
    • 0036154307 scopus 로고    scopus 로고
    • Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides
    • doi: 10.1128/AEM.68.2.545-554.2002
    • Chhabra, S. R., Shockley, K. R., Ward, D. E., and Kelly, R. M. (2002). Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides. Appl. Environ. Microbiol. 68, 545-554. doi: 10.1128/AEM.68.2.545-554.2002
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 545-554
    • Chhabra, S.R.1    Shockley, K.R.2    Ward, D.E.3    Kelly, R.M.4
  • 5
    • 33750041322 scopus 로고    scopus 로고
    • Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
    • doi: 10.1111/j.1574-6976.2006.00039.x
    • Conners, S. B., Mongodin, E. F., Johnson, M. R., Montero, C. I., Nelson, K. E., and Kelly, R. M. (2006). Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species. FEMS Microbiol. Rev. 30, 872-905. doi: 10.1111/j.1574-6976.2006.00039.x
    • (2006) FEMS Microbiol. Rev. , vol.30 , pp. 872-905
    • Conners, S.B.1    Mongodin, E.F.2    Johnson, M.R.3    Montero, C.I.4    Nelson, K.E.5    Kelly, R.M.6
  • 6
    • 27144509128 scopus 로고    scopus 로고
    • An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
    • doi: 10.1128/JB.187.21.7267-7282.2005
    • Conners, S. B., Montero, C. I., Comfort, D. A., Shockley, K. R., Johnson, M. R., Chhabra, S. R., et al. (2005). An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. J. Bacteriol. 187, 7267-7282. doi: 10.1128/JB.187.21.7267-7282.2005
    • (2005) J. Bacteriol. , vol.187 , pp. 7267-7282
    • Conners, S.B.1    Montero, C.I.2    Comfort, D.A.3    Shockley, K.R.4    Johnson, M.R.5    Chhabra, S.R.6
  • 7
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • doi: 10.1101/gr.849004
    • Crooks, G. E., Hon, G., Chandonia, J. M., and Brenner, S. E. (2004). WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190. doi: 10.1101/gr.849004
    • (2004) Genome Res. , vol.14 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 8
    • 75549088819 scopus 로고    scopus 로고
    • MicrobesOnline: an integrated portal for comparative and functional genomics
    • doi: 10.1093/nar/gkp919
    • Dehal, P. S., Joachimiak, M. P., Price, M. N., Bates, J. T., Baumohl, J. K., Chivian, D., et al. (2010). MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38, D396-D400. doi: 10.1093/nar/gkp919
    • (2010) Nucleic Acids Res. , vol.38
    • Dehal, P.S.1    Joachimiak, M.P.2    Price, M.N.3    Bates, J.T.4    Baumohl, J.K.5    Chivian, D.6
  • 9
    • 42049092081 scopus 로고    scopus 로고
    • The mechanisms of carbon catabolite repression in bacteria
    • doi: 10.1016/j.mib.2008.02.007
    • Deutscher, J. (2008). The mechanisms of carbon catabolite repression in bacteria. Curr. Opin. Microbiol. 11, 87-93. doi: 10.1016/j.mib.2008.02.007
    • (2008) Curr. Opin. Microbiol. , vol.11 , pp. 87-93
    • Deutscher, J.1
  • 10
    • 85047688512 scopus 로고    scopus 로고
    • Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models
    • doi: 10.1093/bib/bbs071. [Epub ahead of print]
    • Faria, J. P., Overbeek, R., Xia, F., Rocha, M., Rocha, I., and Henry, C. S. (2013). Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models. Brief Bioinform. doi: 10.1093/bib/bbs071. [Epub ahead of print].
    • (2013) Brief Bioinform.,
    • Faria, J.P.1    Overbeek, R.2    Xia, F.3    Rocha, M.4    Rocha, I.5    Henry, C.S.6
  • 11
    • 84857803390 scopus 로고    scopus 로고
    • Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases
    • doi: 10.1128/AEM.07069-11
    • Frock, A. D., Gray, S. R., and Kelly, R. M. (2012). Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases. Appl. Environ. Microbiol. 78, 1978-1986. doi: 10.1128/AEM.07069-11
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 1978-1986
    • Frock, A.D.1    Gray, S.R.2    Kelly, R.M.3
  • 12
    • 0022522022 scopus 로고
    • Thermotoga maritima sp.nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C
    • doi: 10.1007/BF00409880
    • Huber, R., Langworthy, T. A., Konig, H., Thomm, M., Woese, C. R., Sleytr, U. B., et al. (1986). Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. 144, 324-333. doi: 10.1007/BF00409880
    • (1986) Arch. Microbiol. , vol.144 , pp. 324-333
    • Huber, R.1    Langworthy, T.A.2    Konig, H.3    Thomm, M.4    Woese, C.R.5    Sleytr, U.B.6
  • 14
    • 84875463123 scopus 로고    scopus 로고
    • Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum
    • doi: 10.1093/nar/gks1184
    • Kazanov, M., Li, X., Gelfand, M., Osterman, A., and Rodionov, D. (2013). Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum. Nucleic Acids Res. 41, 790-803. doi: 10.1093/nar/gks1184
    • (2013) Nucleic Acids Res. , vol.41 , pp. 790-803
    • Kazanov, M.1    Li, X.2    Gelfand, M.3    Osterman, A.4    Rodionov, D.5
  • 15
    • 0242417644 scopus 로고    scopus 로고
    • Molecular and biochemical characterization of the thermoactive family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima
    • doi: 10.1042/BJ20021595
    • Kluskens, L. D., Van Alebeek, G. J., Voragen, A. G., De Vos, W. M., and Van Der Oost, J. (2003). Molecular and biochemical characterization of the thermoactive family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima. Biochem. J. 370, 651-659. doi: 10.1042/BJ20021595
    • (2003) Biochem. J. , vol.370 , pp. 651-659
    • Kluskens, L.D.1    Van Alebeek, G.J.2    Voragen, A.G.3    De Vos, W.M.4    Van Der Oost, J.5
  • 16
    • 84876869596 scopus 로고    scopus 로고
    • The genome organization of Thermotoga maritima reflects its lifestyle
    • doi: 10.1371/journal.pgen.1003485
    • Latif, H., Lerman, J. A., Portnoy, V. A., Tarasova, Y., Nagarajan, H., Schrimpe-Rutledge, A. C., et al. (2013). The genome organization of Thermotoga maritima reflects its lifestyle. PLoS Genet. 9:e1003485. doi: 10.1371/journal.pgen.1003485
    • (2013) PLoS Genet. , vol.9
    • Latif, H.1    Lerman, J.A.2    Portnoy, V.A.3    Tarasova, Y.4    Nagarajan, H.5    Schrimpe-Rutledge, A.C.6
  • 17
    • 84864976363 scopus 로고    scopus 로고
    • N-acetylgalactosamine utilization pathway and regulon in proteobacteria: genomic reconstruction and experimental characterization in Shewanella
    • doi: 10.1074/jbc.M112.382333
    • Leyn, S. A., Gao, F., Yang, C., and Rodionov, D. A. (2012). N-acetylgalactosamine utilization pathway and regulon in proteobacteria: genomic reconstruction and experimental characterization in Shewanella. J. Biol. Chem. 287, 28047-28056. doi: 10.1074/jbc.M112.382333
    • (2012) J. Biol. Chem. , vol.287 , pp. 28047-28056
    • Leyn, S.A.1    Gao, F.2    Yang, C.3    Rodionov, D.A.4
  • 18
    • 84877989943 scopus 로고    scopus 로고
    • Genomic reconstruction of transcriptional regulatory network in Bacillus subtilis
    • doi: 10.1128/JB.00140-13
    • Leyn, S. A., Kazanov, M. D., Sernova, N. V., Ermakova, E. O., Novichkov, P. S., and Rodionov, D. A. (2013). Genomic reconstruction of transcriptional regulatory network in Bacillus subtilis. J. Bacteriol. 195, 2463-2473. doi: 10.1128/JB.00140-13
    • (2013) J. Bacteriol. , vol.195 , pp. 2463-2473
    • Leyn, S.A.1    Kazanov, M.D.2    Sernova, N.V.3    Ermakova, E.O.4    Novichkov, P.S.5    Rodionov, D.A.6
  • 19
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
    • doi: 10.1038/20601
    • Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., et al. (1999). Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329. doi: 10.1038/20601
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3    Gwinn, M.L.4    Dodson, R.J.5    Haft, D.H.6
  • 20
    • 3042735789 scopus 로고    scopus 로고
    • Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat
    • doi: 10.1128/JB.186.14.4824-4828.2004
    • Nguyen, T. N., Ejaz, A. D., Brancieri, M. A., Mikula, A. M., Nelson, K. E., Gill, S. R., et al. (2004). Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat. J. Bacteriol. 186, 4824-4828. doi: 10.1128/JB.186.14.4824-4828.2004
    • (2004) J. Bacteriol. , vol.186 , pp. 4824-4828
    • Nguyen, T.N.1    Ejaz, A.D.2    Brancieri, M.A.3    Mikula, A.M.4    Nelson, K.E.5    Gill, S.R.6
  • 21
    • 75549086541 scopus 로고    scopus 로고
    • RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
    • doi: 10.1093/nar/gkp894
    • Novichkov, P. S., Laikova, O. N., Novichkova, E. S., Gelfand, M. S., Arkin, A. P., Dubchak, I., et al. (2010a). RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38, D111-D118. doi: 10.1093/nar/gkp894
    • (2010) Nucleic Acids Res. , vol.38
    • Novichkov, P.S.1    Laikova, O.N.2    Novichkova, E.S.3    Gelfand, M.S.4    Arkin, A.P.5    Dubchak, I.6
  • 22
    • 77954254495 scopus 로고    scopus 로고
    • RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
    • doi: 10.1093/nar/gkq531
    • Novichkov, P. S., Rodionov, D. A., Stavrovskaya, E. D., Novichkova, E. S., Kazakov, A. E., Gelfand, M. S., et al. (2010b). RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38, W299-W307. doi: 10.1093/nar/gkq531
    • (2010) Nucleic Acids Res. , vol.38
    • Novichkov, P.S.1    Rodionov, D.A.2    Stavrovskaya, E.D.3    Novichkova, E.S.4    Kazakov, A.E.5    Gelfand, M.S.6
  • 23
    • 25644458211 scopus 로고    scopus 로고
    • The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
    • doi: 10.1093/nar/gki866
    • Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. Y., Cohoon, M., et al. (2005). The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33, 5691-5702. doi: 10.1093/nar/gki866
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5691-5702
    • Overbeek, R.1    Begley, T.2    Butler, R.M.3    Choudhuri, J.V.4    Chuang, H.Y.5    Cohoon, M.6
  • 24
    • 0021906874 scopus 로고
    • Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium
    • doi: 10.1007/BF00446741
    • Patel, B. K. C., Morgan, H. W., and Daniel, R. M. (1985). Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch. Microbiol. 141, 63-69. doi: 10.1007/BF00446741
    • (1985) Arch. Microbiol. , vol.141 , pp. 63-69
    • Patel, B.K.C.1    Morgan, H.W.2    Daniel, R.M.3
  • 25
    • 77950337763 scopus 로고    scopus 로고
    • Plant cell wall polymers as precursors for biofuels
    • doi: 10.1016/j.pbi.2009.12.009
    • Pauly, M., and Keegstra, K. (2010). Plant cell wall polymers as precursors for biofuels. Curr. Opin. Plant Biol. 13, 305-312. doi: 10.1016/j.pbi.2009.12.009
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 305-312
    • Pauly, M.1    Keegstra, K.2
  • 26
    • 84873699939 scopus 로고    scopus 로고
    • Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria
    • doi: 10.1186/1471-2164-14-94
    • Ravcheev, D. A., Best, A. A., Sernova, N. V., Kazanov, M. D., Novichkov, P. S., and Rodionov, D. A. (2013). Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria. BMC Genomics 14:94. doi: 10.1186/1471-2164-14-94
    • (2013) BMC Genomics , vol.14 , pp. 94
    • Ravcheev, D.A.1    Best, A.A.2    Sernova, N.V.3    Kazanov, M.D.4    Novichkov, P.S.5    Rodionov, D.A.6
  • 27
    • 84863285072 scopus 로고    scopus 로고
    • Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex
    • doi: 10.1128/JB.06412-11
    • Ravcheev, D. A., Li, X., Latif, H., Zengler, K., Leyn, S. A., Korostelev, Y. D., et al. (2012). Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex. J. Bacteriol. 194, 1145-1157. doi: 10.1128/JB.06412-11
    • (2012) J. Bacteriol. , vol.194 , pp. 1145-1157
    • Ravcheev, D.A.1    Li, X.2    Latif, H.3    Zengler, K.4    Leyn, S.A.5    Korostelev, Y.D.6
  • 28
    • 0034609603 scopus 로고    scopus 로고
    • Effect of carbon and nitrogen sources on growth dynamics and exopolysaccharide production for the hyperthermophilic archaeon Thermococcus litoralis and bacterium Thermotoga maritima
    • Rinker, K. D., and Kelly, R. M. (2000). Effect of carbon and nitrogen sources on growth dynamics and exopolysaccharide production for the hyperthermophilic archaeon Thermococcus litoralis and bacterium Thermotoga maritima. Biotechnol. Bioeng. 69, 537-547.
    • (2000) Biotechnol. Bioeng. , vol.69 , pp. 537-547
    • Rinker, K.D.1    Kelly, R.M.2
  • 29
    • 34548219522 scopus 로고    scopus 로고
    • Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
    • doi: 10.1021/cr068309+
    • Rodionov, D. A. (2007). Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. Chem. Rev. 107, 3467-3497. doi: 10.1021/cr068309+
    • (2007) Chem. Rev. , vol.107 , pp. 3467-3497
    • Rodionov, D.A.1
  • 30
    • 9144270620 scopus 로고    scopus 로고
    • Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria
    • doi: 10.1099/mic.0.27041-0
    • Rodionov, D. A., Gelfand, M. S., and Hugouvieux-Cotte-Pattat, N. (2004). Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria. Microbiology 150, 3571-3590. doi: 10.1099/mic.0.27041-0
    • (2004) Microbiology , vol.150 , pp. 3571-3590
    • Rodionov, D.A.1    Gelfand, M.S.2    Hugouvieux-Cotte-Pattat, N.3
  • 31
    • 34248337528 scopus 로고    scopus 로고
    • Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate
    • doi: 10.1073/pnas.0609279104
    • Rodionov, D. A., Kurnasov, O. V., Stec, B., Wang, Y., Roberts, M. F., and Osterman, A. L. (2007). Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate. Proc. Natl. Acad. Sci. U.S.A. 104, 4279-4284. doi: 10.1073/pnas.0609279104
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 4279-4284
    • Rodionov, D.A.1    Kurnasov, O.V.2    Stec, B.3    Wang, Y.4    Roberts, M.F.5    Osterman, A.L.6
  • 32
    • 0035910178 scopus 로고    scopus 로고
    • Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
    • doi: 10.1111/j.1574-6968.2001.tb10965.x
    • Rodionov, D. A., Mironov, A. A., and Gelfand, M. S. (2001). Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol. Lett. 205, 305-314. doi: 10.1111/j.1574-6968.2001.tb10965.x
    • (2001) FEMS Microbiol. Lett. , vol.205 , pp. 305-314
    • Rodionov, D.A.1    Mironov, A.A.2    Gelfand, M.S.3
  • 33
    • 79958842141 scopus 로고    scopus 로고
    • Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
    • doi: 10.1186/1471-2164-12-S1-S3
    • Rodionov, D. A., Novichkov, P. S., Stavrovskaya, E. D., Rodionova, I. A., Li, X., Kazanov, M. D., et al. (2011). Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics 12(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3
    • (2011) BMC Genomics , vol.12 , Issue.SUPPL 1
    • Rodionov, D.A.1    Novichkov, P.S.2    Stavrovskaya, E.D.3    Rodionova, I.A.4    Li, X.5    Kazanov, M.D.6
  • 34
    • 77956470735 scopus 로고    scopus 로고
    • Genomic encyclopedia of sugar utilization pathways in the Shewanella genus
    • doi: 10.1186/1471-2164-11-494
    • Rodionov, D. A., Yang, C., Li, X., Rodionova, I. A., Wang, Y., Obraztsova, A. Y., et al. (2010). Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. BMC Genomics 11:494. doi: 10.1186/1471-2164-11-494
    • (2010) BMC Genomics , vol.11 , pp. 494
    • Rodionov, D.A.1    Yang, C.2    Li, X.3    Rodionova, I.A.4    Wang, Y.5    Obraztsova, A.Y.6
  • 36
    • 84868000088 scopus 로고    scopus 로고
    • Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima
    • doi: 10.1111/j.1462-2920.2012.02856.x
    • Rodionova, I. A., Scott, D. A., Grishin, N. V., Osterman, A. L., and Rodionov, D. A. (2012a). Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima. Environ. Microbiol. 14, 2920-2934. doi: 10.1111/j.1462-2920.2012.02856.x
    • (2012) Environ. Microbiol. , vol.14 , pp. 2920-2934
    • Rodionova, I.A.1    Scott, D.A.2    Grishin, N.V.3    Osterman, A.L.4    Rodionov, D.A.5
  • 37
    • 84868524371 scopus 로고    scopus 로고
    • Diversity and versatility of the Thermotoga maritima sugar kinome
    • doi: 10.1128/JB.01136-12
    • Rodionova, I. A., Yang, C., Li, X., Kurnasov, O. V., Best, A. A., Osterman, A. L., et al. (2012b). Diversity and versatility of the Thermotoga maritima sugar kinome. J. Bacteriol. 194, 5552-5563. doi: 10.1128/JB.01136-12
    • (2012) J. Bacteriol. , vol.194 , pp. 5552-5563
    • Rodionova, I.A.1    Yang, C.2    Li, X.3    Kurnasov, O.V.4    Best, A.A.5    Osterman, A.L.6
  • 38
    • 80053614029 scopus 로고    scopus 로고
    • Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores
    • doi: 10.1128/JB.05923-11
    • Swithers, K. S., Dipippo, J. L., Bruce, D. C., Detter, C., Tapia, R., Han, S., et al. (2011). Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores. J. Bacteriol. 193, 5869-5870. doi: 10.1128/JB.05923-11
    • (2011) J. Bacteriol. , vol.193 , pp. 5869-5870
    • Swithers, K.S.1    Dipippo, J.L.2    Bruce, D.C.3    Detter, C.4    Tapia, R.5    Han, S.6
  • 39
    • 0033989024 scopus 로고    scopus 로고
    • Distribution and physiological characteristics of hyperthermophiles in the Kubiki oil reservoir in Niigata, Japan
    • doi: 10.1128/AEM.66.1.73-79.2000
    • Takahata, Y., Nishijima, M., Hoaki, T., and Maruyama, T. (2000). Distribution and physiological characteristics of hyperthermophiles in the Kubiki oil reservoir in Niigata, Japan. Appl. Environ. Microbiol. 66, 73-79. doi: 10.1128/AEM.66.1.73-79.2000
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 73-79
    • Takahata, Y.1    Nishijima, M.2    Hoaki, T.3    Maruyama, T.4
  • 40
    • 33749547956 scopus 로고    scopus 로고
    • Comparative genomics and experimental characterization of Nacetylglucosamine utilization pathway of Shewanella oneidensis
    • doi: 10.1074/jbc.M605052200
    • Yang, C., Rodionov, D. A., Li, X., Laikova, O. N., Gelfand, M. S., Zagnitko, O. P., et al. (2006). Comparative genomics and experimental characterization of Nacetylglucosamine utilization pathway of Shewanella oneidensis. J. Biol. Chem. 281, 29872-29885. doi: 10.1074/jbc.M605052200
    • (2006) J. Biol. Chem. , vol.281 , pp. 29872-29885
    • Yang, C.1    Rodionov, D.A.2    Li, X.3    Laikova, O.N.4    Gelfand, M.S.5    Zagnitko, O.P.6
  • 41
    • 39749093113 scopus 로고    scopus 로고
    • Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways
    • doi: 10.1128/JB.01469-07
    • Yang, C., Rodionov, D. A., Rodionova, I. A., Li, X., and Osterman, A. L. (2008). Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways. J. Bacteriol. 190, 1773-1782. doi: 10.1128/JB.01469-07
    • (2008) J. Bacteriol. , vol.190 , pp. 1773-1782
    • Yang, C.1    Rodionov, D.A.2    Rodionova, I.A.3    Li, X.4    Osterman, A.L.5
  • 42
    • 84863265097 scopus 로고    scopus 로고
    • Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum
    • doi: 10.1128/JB.06241-11
    • Zhang, L., Leyn, S. A., Gu, Y., Jiang, W., Rodionov, D. A., and Yang, C. (2012). Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum. J. Bacteriol. 194, 1055-1064. doi: 10.1128/JB.06241-11
    • (2012) J. Bacteriol. , vol.194 , pp. 1055-1064
    • Zhang, L.1    Leyn, S.A.2    Gu, Y.3    Jiang, W.4    Rodionov, D.A.5    Yang, C.6
  • 43
    • 70349345898 scopus 로고    scopus 로고
    • Three-dimensional structural view of the central metabolic network of Thermotoga maritima
    • doi: 10.1126/science.1174671
    • Zhang, Y., Thiele, I., Weekes, D., Li, Z., Jaroszewski, L., Ginalski, K., et al. (2009). Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science 325, 1544-1549. doi: 10.1126/science.117467
    • (2009) Science , vol.325 , pp. 1544-1549
    • Zhang, Y.1    Thiele, I.2    Weekes, D.3    Li, Z.4    Jaroszewski, L.5    Ginalski, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.