메뉴 건너뛰기




Volumn 8, Issue 1, 2015, Pages

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions

Author keywords

16S rRNA; Biogas; Dry fermentation; Fragment recruitment; Metagenomics; Methanoculleus bourgensis; Methanogenesis; Microbial communities; Wet fermentation

Indexed keywords

BIOGAS; BIOINFORMATICS; DNA SEQUENCES; GENE ENCODING; GENES; METHANE; MICROORGANISMS; PROCESS CONTROL; RNA; THROUGHPUT;

EID: 84924046414     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-014-0193-8     Document Type: Article
Times cited : (153)

References (87)
  • 1
    • 76649102408 scopus 로고    scopus 로고
    • Biogas production: Current state and perspectives
    • Weiland P. Biogas production: current state and perspectives. Appl Microbiol Biotechnol. 2010;85:849-60.
    • (2010) Appl Microbiol Biotechnol. , vol.85 , pp. 849-860
    • Weiland, P.1
  • 2
    • 2942661320 scopus 로고    scopus 로고
    • Enhancement of biogas production from solid substrates using different techniques - a review
    • Yadvika S, Sreekrishnan TR, Kohli S, Rana V. Enhancement of biogas production from solid substrates using different techniques - a review. Bioresour Technol. 2004;95:1-10.
    • (2004) Bioresour Technol. , vol.95 , pp. 1-10
    • Yadvika, S.1    Sreekrishnan, T.R.2    Kohli, S.3    Rana, V.4
  • 3
    • 30344472390 scopus 로고    scopus 로고
    • Anaerobic bacterial degradation for the effective utilization of biomass
    • Ohmiya K, Sakka K, Kimura T. Anaerobic bacterial degradation for the effective utilization of biomass. Biotechnol Bioprocess Eng. 2005;10:482-93.
    • (2005) Biotechnol Bioprocess Eng. , vol.10 , pp. 482-493
    • Ohmiya, K.1    Sakka, K.2    Kimura, T.3
  • 4
    • 77956454340 scopus 로고    scopus 로고
    • Biogas from Energy Crop Digestion
    • Paris, France: International Energy Agency
    • Braun R. Biogas from Energy Crop Digestion. In: IEA Task 37 Brochure. Paris, France: International Energy Agency; 2009.
    • (2009) IEA Task 37 Brochure
    • Braun, R.1
  • 5
    • 84872568850 scopus 로고    scopus 로고
    • Changes in the Archaea microbial community when the biogas fermenters are fed with protein-rich substrates
    • Ács N, Kovács E, Wirth R, Bagi Z, Strang O, Herbel Z, et al. Changes in the Archaea microbial community when the biogas fermenters are fed with protein-rich substrates. Bioresour Technol. 2012;131:121-7.
    • (2012) Bioresour Technol. , vol.131 , pp. 121-127
    • Ács, N.1    Kovács, E.2    Wirth, R.3    Bagi, Z.4    Strang, O.5    Herbel, Z.6
  • 6
    • 84861141195 scopus 로고    scopus 로고
    • Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates
    • Kampmann K, Ratering S, Kramer I, Schmidt M, Zerr W, Schnell S. Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl Environ Microbiol. 2012;78(7):2106-19.
    • (2012) Appl Environ Microbiol. , vol.78 , Issue.7 , pp. 2106-2119
    • Kampmann, K.1    Ratering, S.2    Kramer, I.3    Schmidt, M.4    Zerr, W.5    Schnell, S.6
  • 7
    • 84859480633 scopus 로고    scopus 로고
    • Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity
    • Wei H, Tucker MP, Baker JO, Harris M, Luo Y, Xu Q, et al. Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity. Biotechnol Biofuels. 2012;5:20.
    • (2012) Biotechnol Biofuels. , vol.5 , pp. 20
    • Wei, H.1    Tucker, M.P.2    Baker, J.O.3    Harris, M.4    Luo, Y.5    Xu, Q.6
  • 8
    • 84874739720 scopus 로고    scopus 로고
    • Stability of a biogasproducing bacterial, archaeal and fungal community degrading food residues
    • Bengelsdorf FR, Gerischer U, Langer S, Zak M, Kazda M. Stability of a biogasproducing bacterial, archaeal and fungal community degrading food residues. FEMS Microbiol Ecol. 2012;84(1):201-12.
    • (2012) FEMS Microbiol Ecol. , vol.84 , Issue.1 , pp. 201-212
    • Bengelsdorf, F.R.1    Gerischer, U.2    Langer, S.3    Zak, M.4    Kazda, M.5
  • 9
    • 33846879171 scopus 로고    scopus 로고
    • Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate
    • Klocke M, Mähnert P, Mundt K, Souidi K, Linke B. Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate. Syst Appl Microbiol. 2007;30:139-51.
    • (2007) Syst Appl Microbiol. , vol.30 , pp. 139-151
    • Klocke, M.1    Mähnert, P.2    Mundt, K.3    Souidi, K.4    Linke, B.5
  • 10
    • 60049090175 scopus 로고    scopus 로고
    • The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis
    • Liu FH, Wang SB, Zhang JS, Zhang J, Yan X, Zhou HK, et al. The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis. J Appl Microbiol. 2009;106(3):952-66.
    • (2009) J Appl Microbiol. , vol.106 , Issue.3 , pp. 952-966
    • Liu, F.H.1    Wang, S.B.2    Zhang, J.S.3    Zhang, J.4    Yan, X.5    Zhou, H.K.6
  • 11
    • 54349124512 scopus 로고    scopus 로고
    • Diversity of the resident microbiota in a thermophilic municipal biogas plant
    • Weiss A, Jerome V, Freitag R, Mayer HK. Diversity of the resident microbiota in a thermophilic municipal biogas plant. Appl Microbiol Biotechnol. 2008;81(1):163-73.
    • (2008) Appl Microbiol Biotechnol. , vol.81 , Issue.1 , pp. 163-173
    • Weiss, A.1    Jerome, V.2    Freitag, R.3    Mayer, H.K.4
  • 12
    • 70349240275 scopus 로고    scopus 로고
    • Investigation of factors influencing biogas production in a large-scale thermophilic municipal biogas plant
    • Weiss A, Jérôme V, Burghardt D, Likke L, Peiffer S, Hofstetter EM, et al. Investigation of factors influencing biogas production in a large-scale thermophilic municipal biogas plant. Appl Microbiol Biotechnol. 2009;84:987-1001.
    • (2009) Appl Microbiol Biotechnol. , vol.84 , pp. 987-1001
    • Weiss, A.1    Jérôme, V.2    Burghardt, D.3    Likke, L.4    Peiffer, S.5    Hofstetter, E.M.6
  • 13
    • 79251506683 scopus 로고    scopus 로고
    • Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing
    • Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, et al. Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing. PLoS One. 2011;6:e14519.
    • (2011) PLoS One , vol.6 , pp. e14519
    • Jaenicke, S.1    Ander, C.2    Bekel, T.3    Bisdorf, R.4    Dröge, M.5    Gartemann, K.-H.6
  • 14
    • 49949089661 scopus 로고    scopus 로고
    • Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
    • Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, et al. Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. J Biotechnol. 2008;136(1-2):91-101.
    • (2008) J Biotechnol. , vol.136 , Issue.1-2 , pp. 91-101
    • Krause, L.1    Diaz, N.N.2    Edwards, R.A.3    Gartemann, K.-H.4    Krömeke, H.5    Neuweger, H.6
  • 15
    • 84872151297 scopus 로고    scopus 로고
    • A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor
    • Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, et al. A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor. Biotechnol Biofuels. 2013;6:3.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 3
    • Li, A.1    Chu, Y.2    Wang, X.3    Ren, L.4    Yu, J.5    Liu, X.6
  • 16
    • 49949108153 scopus 로고    scopus 로고
    • The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
    • Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, et al. The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. J Biotechnol. 2008;136(1-2):77-90.
    • (2008) J Biotechnol. , vol.136 , Issue.1-2 , pp. 77-90
    • Schlüter, A.1    Bekel, T.2    Diaz, N.N.3    Dondrup, M.4    Eichenlaub, R.5    Gartemann, K.-H.6
  • 17
    • 84861801813 scopus 로고    scopus 로고
    • Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing
    • Wirth R, Kovacs E, Maróti G, Bagi Z, Rákhely G, Kovács KL. Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing. Biotechnol Biofuels. 2012;5:41.
    • (2012) Biotechnol Biofuels. , vol.5 , pp. 41
    • Wirth, R.1    Kovacs, E.2    Maróti, G.3    Bagi, Z.4    Rákhely, G.5    Kovács, K.L.6
  • 18
  • 19
    • 84881484438 scopus 로고    scopus 로고
    • Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging
    • Eikmeyer F, Köfinger P, Poschenel A, Jünemann S, Zakrzewski M, Heinl S, et al. Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging. J Biotechnol. 2013;167(3):334-43.
    • (2013) J Biotechnol. , vol.167 , Issue.3 , pp. 334-343
    • Eikmeyer, F.1    Köfinger, P.2    Poschenel, A.3    Jünemann, S.4    Zakrzewski, M.5    Heinl, S.6
  • 20
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, et al. The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 2007;5(3):e77.
    • (2007) PLoS Biol. , vol.5 , Issue.3 , pp. e77
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 21
    • 33746089927 scopus 로고    scopus 로고
    • Biomass digestion in agriculture: A successful pathway for the energy production and waste treatment in Germany
    • Weiland P. Biomass digestion in agriculture: a successful pathway for the energy production and waste treatment in Germany. Eng Life Sci. 2006;6(3):302-9.
    • (2006) Eng Life Sci. , vol.6 , Issue.3 , pp. 302-309
    • Weiland, P.1
  • 22
    • 84859162556 scopus 로고    scopus 로고
    • Novel Streptococcus infantarius subsp. Infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus
    • Jans C, Gerber A, Bugnard J, Njage PM, Lacroix C, Meile L. Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus. Food Microbiol. 2012;31(1):33-42.
    • (2012) Food Microbiol. , vol.31 , Issue.1 , pp. 33-42
    • Jans, C.1    Gerber, A.2    Bugnard, J.3    Njage, P.M.4    Lacroix, C.5    Meile, L.6
  • 23
    • 80051735813 scopus 로고    scopus 로고
    • Taxonomic classification of metagenomic shotgun sequences with CARMA3
    • Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 2011;39:e91.
    • (2011) Nucleic Acids Res. , vol.39 , pp. e91
    • Gerlach, W.1    Stoye, J.2
  • 24
    • 84881663626 scopus 로고    scopus 로고
    • Meta SAMSA novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
    • Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, et al. Meta SAMSA novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. J Biotechnol. 2012;167(2):156-65.
    • (2012) J Biotechnol. , vol.167 , Issue.2 , pp. 156-165
    • Zakrzewski, M.1    Bekel, T.2    Ander, C.3    Pühler, A.4    Rupp, O.5    Stoye, J.6
  • 25
    • 77957262599 scopus 로고    scopus 로고
    • Absence of intestinal microbiota does not protect mice from diet-induced obesity
    • Fleissner CK, Huebel N, Abd El-Bary MM, Loh G, Klaus S, Blaut M. Absence of intestinal microbiota does not protect mice from diet-induced obesity. Br J Nutr. 2010;104(6):919-29.
    • (2010) Br J Nutr. , vol.104 , Issue.6 , pp. 919-929
    • Fleissner, C.K.1    Huebel, N.2    Abd, E.-B.M.M.3    Loh, G.4    Klaus, S.5    Blaut, M.6
  • 26
    • 84863992229 scopus 로고    scopus 로고
    • Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2
    • Brown SD, Lamed R, Morag E, Borovok I, Shoham Y, Klingeman DM, et al. Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2. J Bacteriol. 2012;194(12):3290-1.
    • (2012) J Bacteriol. , vol.194 , Issue.12 , pp. 3290-3291
    • Brown, S.D.1    Lamed, R.2    Morag, E.3    Borovok, I.4    Shoham, Y.5    Klingeman, D.M.6
  • 28
    • 73349122629 scopus 로고    scopus 로고
    • New alkaliphilic peptide fermenting and Fe(III) regenerating Bacteria Alkaliphilus peptidofermentans sp.nov. From soda lake
    • Zhilina TN, Zavarzina DG, Kolganova TV, Lysenko AM, Turova TP. New alkaliphilic peptide fermenting and Fe(III) regenerating Bacteria Alkaliphilus peptidofermentans sp.nov. from soda lake. Mikrobiologiia. 2012;78(4):496-505.
    • (2012) Mikrobiologiia , vol.78 , Issue.4 , pp. 496-505
    • Zhilina, T.N.1    Zavarzina, D.G.2    Kolganova, T.V.3    Lysenko, A.M.4    Turova, T.P.5
  • 29
    • 69949130305 scopus 로고    scopus 로고
    • Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1
    • Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, et al. Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. PLoS One. 2009;4(8):e6650.
    • (2009) PLoS One , vol.4 , Issue.8 , pp. e6650
    • Berg, M.M.E.1    Antonopoulos, D.A.2    Rincon, M.T.3    Band, M.4    Bari, A.5    Akraiko, T.6
  • 30
    • 0028805164 scopus 로고    scopus 로고
    • Bioconversion of cellulose to acetate with pure cultures of Ruminococcus albus and a hydrogen-using acetogen
    • Miller TL, Wolin MJ. Bioconversion of cellulose to acetate with pure cultures of Ruminococcus albus and a hydrogen-using acetogen. Appl Environ Microbiol. 2012;61(11):3832-5.
    • (2012) Appl Environ Microbiol. , vol.61 , Issue.11 , pp. 3832-3835
    • Miller, T.L.1    Wolin, M.J.2
  • 31
    • 84861557402 scopus 로고    scopus 로고
    • Genome-wide analysis of Acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system
    • Dassa B, Borovok I, Lamed R, Henrissat B, Coutinho P, Hemme CL, et al. Genome-wide analysis of Acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system. BMC Genomics. 2012;13:210.
    • (2012) BMC Genomics , vol.13 , pp. 210
    • Dassa, B.1    Borovok, I.2    Lamed, R.3    Henrissat, B.4    Coutinho, P.5    Hemme, C.L.6
  • 32
    • 79955547485 scopus 로고    scopus 로고
    • Complete genome sequence of Streptococcus suis serotype 14 strain JS14
    • Hu P, Yang M, Zhang A, Wu J, Chen B, Hua Y, et al. Complete genome sequence of Streptococcus suis serotype 14 strain JS14. J Bacteriol. 2012;193(9):2375-6.
    • (2012) J Bacteriol. , vol.193 , Issue.9 , pp. 2375-2376
    • Hu, P.1    Yang, M.2    Zhang, A.3    Wu, J.4    Chen, B.5    Hua, Y.6
  • 33
    • 77955125715 scopus 로고    scopus 로고
    • Fructanolytic and saccharolytic enzymes of the rumen bacterium Pseudobutyrivibrio ruminis strain 3-preliminary study
    • Kasperowicz A, Stan-Glasek K, Guczynska W, Piknová M, Pristas P, Nigutová K, et al. Fructanolytic and saccharolytic enzymes of the rumen bacterium Pseudobutyrivibrio ruminis strain 3-preliminary study. Folia Microbiol. 2010;55(4):329-31.
    • (2010) Folia Microbiol. , vol.55 , Issue.4 , pp. 329-331
    • Kasperowicz, A.1    Stan-Glasek, K.2    Guczynska, W.3    Piknová, M.4    Pristas, P.5    Nigutová, K.6
  • 34
    • 0032947344 scopus 로고    scopus 로고
    • Phylogenetic analysis of Formivibrio citricus, Propionivibrio dicarboxylicus, Anaerobiospirillum thomasii. Succinimonas amylolytica and Succinivibrio dextrinosolvens and proposal of Succinivibrionaceae fam. Nov
    • Hippe H, Hagelstein A, Kramer I, Swiderski J, Stackebrandt E. Phylogenetic analysis of Formivibrio citricus, Propionivibrio dicarboxylicus, Anaerobiospirillum thomasii. Succinimonas amylolytica and Succinivibrio dextrinosolvens and proposal of Succinivibrionaceae fam. nov. Int J Syst Bacteriol. 1999;49(Pt 2):779-82.
    • (1999) Int J Syst Bacteriol. , vol.49 , pp. 779-782
    • Hippe, H.1    Hagelstein, A.2    Kramer, I.3    Swiderski, J.4    Stackebrandt, E.5
  • 35
    • 79955446915 scopus 로고    scopus 로고
    • The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist
    • Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, et al. The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PLoS One. 2011;6(4):e18814.
    • (2011) PLoS One , vol.6 , Issue.4 , pp. e18814
    • Suen, G.1    Weimer, P.J.2    Stevenson, D.M.3    Aylward, F.O.4    Boyum, J.5    Deneke, J.6
  • 37
    • 78149466996 scopus 로고    scopus 로고
    • North American Consortium for Rumen Bacteria, et al. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: Insights into their environmental niche
    • Purushe J, Fouts DE, Morrison M, White BA, Mackie RI, North American Consortium for Rumen Bacteria, et al. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb Ecol. 2010;60(4):721-9.
    • (2010) Microb Ecol. , vol.60 , Issue.4 , pp. 721-729
    • Purushe, J.1    Fouts, D.E.2    Morrison, M.3    White, B.A.4    Mackie, R.I.5
  • 39
    • 0032194380 scopus 로고    scopus 로고
    • Aminobacterium colombiensegen nov. Sp. Nov., an amino acid-degrading anaerobe isolated from anaerobic sludge
    • Baena S, Fardeau ML, Labat M, Ollivier B, Thomas P, Garcia JL, et al. Aminobacterium colombiensegen nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe. 1998;4(5):241-50.
    • (1998) Anaerobe , vol.4 , Issue.5 , pp. 241-250
    • Baena, S.1    Fardeau, M.L.2    Labat, M.3    Ollivier, B.4    Thomas, P.5    Garcia, J.L.6
  • 41
    • 41549103817 scopus 로고    scopus 로고
    • Candidatus Cloacamonas acidaminovorans: Genome sequence reconstruction provides a first glimpse of a new bacterial division
    • Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, et al. Candidatus Cloacamonas acidaminovorans: genome sequence reconstruction provides a first glimpse of a new bacterial division. J Bacteriol. 2008;190(7):2572-9.
    • (2008) J Bacteriol , vol.190 , Issue.7 , pp. 2572-2579
    • Pelletier, E.1    Kreimeyer, A.2    Bocs, S.3    Rouy, Z.4    Gyapay, G.5    Chouari, R.6
  • 42
    • 67349232764 scopus 로고    scopus 로고
    • Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
    • Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, et al. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J Biotechnol. 2009;142(1):38-49.
    • (2009) J Biotechnol. , vol.142 , Issue.1 , pp. 38-49
    • Kröber, M.1    Bekel, T.2    Diaz, N.N.3    Goesmann, A.4    Jaenicke, S.5    Krause, L.6
  • 43
    • 84868321538 scopus 로고    scopus 로고
    • Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2(T), isolated from a sewage sludge digester
    • Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, et al. Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2(T), isolated from a sewage sludge digester. J Bacteriol. 2012;194(19):5487-8.
    • (2012) J Bacteriol. , vol.194 , Issue.19 , pp. 5487-5488
    • Maus, I.1    Wibberg, D.2    Stantscheff, R.3    Eikmeyer, F.G.4    Seffner, A.5    Boelter, J.6
  • 44
    • 84867601651 scopus 로고    scopus 로고
    • Searching for links in the biotic characteristics and abiotic parameters of nine different biogas plants
    • Walter A, Knapp BA, Farbmacher T, Ebner C, Insam H, Franke-Whittle IH. Searching for links in the biotic characteristics and abiotic parameters of nine different biogas plants. Microb Biotechnol. 2012;5(6):717-30.
    • (2012) Microb Biotechnol. , vol.5 , Issue.6 , pp. 717-730
    • Walter, A.1    Knapp, B.A.2    Farbmacher, T.3    Ebner, C.4    Insam, H.5    Franke-Whittle, I.H.6
  • 45
    • 34047135116 scopus 로고    scopus 로고
    • Methanosaeta, the forgotten methanogen?
    • Smith KS, Ingram-Smith C. Methanosaeta, the forgotten methanogen? Trends Microbiol. 2007;15(4):150-5.
    • (2007) Trends Microbiol. , vol.15 , Issue.4 , pp. 150-155
    • Smith, K.S.1    Ingram-Smith, C.2
  • 46
    • 84859480879 scopus 로고    scopus 로고
    • Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
    • Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, et al. Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. J Biotechnol. 2012;158(4):248-58.
    • (2012) J Biotechnol. , vol.158 , Issue.4 , pp. 248-258
    • Zakrzewski, M.1    Goesmann, A.2    Jaenicke, S.3    Jünemann, S.4    Eikmeyer, F.G.5    Szczepanowski, R.6
  • 47
    • 84864677092 scopus 로고    scopus 로고
    • Methanomassiliicoccus luminyensis gen. Nov., sp. Nov., a methanogenic archaeon isolated from human faeces
    • Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M. Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int J Syst Evol Microbiol. 2012;62(Pt 8):1902-7.
    • (2012) Int J Syst Evol Microbiol. , vol.62 , pp. 1902-1907
    • Dridi, B.1    Fardeau, M.L.2    Ollivier, B.3    Raoult, D.4    Drancourt, M.5
  • 50
    • 79958181433 scopus 로고    scopus 로고
    • Methanobacterium kanagiense sp. Nov., a hydrogenotrophic methanogen, isolated from rice-field soil
    • Kitamura K, Fujita T, Akada S, Tonouchi A. Methanobacterium kanagiense sp. nov., a hydrogenotrophic methanogen, isolated from rice-field soil. Int J Syst Evol Microbiol. 2011;61(Pt 6):1246-52.
    • (2011) Int J Syst Evol Microbiol. , vol.61 , pp. 1246-1252
    • Kitamura, K.1    Fujita, T.2    Akada, S.3    Tonouchi, A.4
  • 51
    • 33947319665 scopus 로고    scopus 로고
    • Methanobrevibacter millerae sp. Nov. And Methanobrevibacter olleyae sp. Nov., methanogens from the ovine and bovine rumen that can utilize formate for growth
    • Rea S, Bowman JP, Popovski S, Pimm C, Wright AD. Methanobrevibacter millerae sp. nov. and Methanobrevibacter olleyae sp. nov., methanogens from the ovine and bovine rumen that can utilize formate for growth. Int J Syst Evol Microbiol. 2007;57(Pt 3):450-6.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 450-456
    • Rea, S.1    Bowman, J.P.2    Popovski, S.3    Pimm, C.4    Wright, A.D.5
  • 52
    • 79959330411 scopus 로고    scopus 로고
    • Complete genome sequence of Streptococcus suis serotype 3 strain ST3
    • Hu P, Yang M, Zhang A, Wu J, Chen B, Hua Y, et al. Complete genome sequence of Streptococcus suis serotype 3 strain ST3. J Bacteriol. 2011;193(13):3428-9.
    • (2011) J Bacteriol , vol.193 , Issue.13 , pp. 3428-3429
    • Hu, P.1    Yang, M.2    Zhang, A.3    Wu, J.4    Chen, B.5    Hua, Y.6
  • 53
    • 79958084551 scopus 로고    scopus 로고
    • Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313
    • Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, et al. Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313. J Bacteriol. 2011;193(11):2906-7.
    • (2011) J Bacteriol , vol.193 , Issue.11 , pp. 2906-2907
    • Feinberg, L.1    Foden, J.2    Barrett, T.3    Davenport, K.W.4    Bruce, D.5    Detter, C.6
  • 54
    • 77950673658 scopus 로고    scopus 로고
    • Genome sequence of Streptococcus gallolyticus: Insights into its adaptation to the bovine rumen and its ability to cause endocarditis
    • Rusniok C, Couvé E, Da Cunha V, El Gana R, Zidane N, Bouchier C, et al. Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis. J Bacteriol. 2010;192(8):2266-76.
    • (2010) J Bacteriol , vol.192 , Issue.8 , pp. 2266-2276
    • Rusniok, C.1    Couvé, E.2    Da Cunha, V.3    El, G.R.4    Zidane, N.5    Bouchier, C.6
  • 55
    • 84864582003 scopus 로고    scopus 로고
    • Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage
    • Heinl S, Wibberg D, Eikmeyer F, Szczepanowski R, Blom J, Linke B, et al. Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. J Biotechnol. 2012;161(2):153-66.
    • (2012) J Biotechnol , vol.161 , Issue.2 , pp. 153-166
    • Heinl, S.1    Wibberg, D.2    Eikmeyer, F.3    Szczepanowski, R.4    Blom, J.5    Linke, B.6
  • 58
    • 67149096055 scopus 로고    scopus 로고
    • Genomic characterization of Methanomicrobiales reveals three classes of methanogens
    • Anderson I, Ulrich LE, Lupa B, Susanti D, Porat I, Hooper SD, et al. Genomic characterization of Methanomicrobiales reveals three classes of methanogens. PLoS One. 2009;4(6):e5797.
    • (2009) PLoS One , vol.4 , Issue.6 , pp. e5797
    • Anderson, I.1    Ulrich, L.E.2    Lupa, B.3    Susanti, D.4    Porat, I.5    Hooper, S.D.6
  • 62
    • 80053350363 scopus 로고    scopus 로고
    • Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883)
    • Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, et al. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci. 2009;1(3):254-61.
    • (2009) Stand Genomic Sci , vol.1 , Issue.3 , pp. 254-261
    • Chovatia, M.1    Sikorski, J.2    Schröder, M.3    Lapidus, A.4    Nolan, M.5    Tice, H.6
  • 63
    • 77955241649 scopus 로고    scopus 로고
    • The genome of Syntrophomonas wolfei: New insights into syntrophic metabolism and biohydrogen production
    • Sieber JR, Sims DR, Han C, Kim E, Lykidis A, Lapidus AL, et al. The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production. Environ Microbiol. 2010;12(8):2289-301.
    • (2010) Environ Microbiol. , vol.12 , Issue.8 , pp. 2289-2301
    • Sieber, J.R.1    Sims, D.R.2    Han, C.3    Kim, E.4    Lykidis, A.5    Lapidus, A.L.6
  • 65
    • 78649689623 scopus 로고    scopus 로고
    • Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production
    • Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, et al. Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol. 2010;192(24):6494-6.
    • (2010) J Bacteriol. , vol.192 , Issue.24 , pp. 6494-6496
    • Hemme, C.L.1    Mouttaki, H.2    Lee, Y.J.3    Zhang, G.4    Goodwin, L.5    Lucas, S.6
  • 66
    • 79961123954 scopus 로고    scopus 로고
    • Complete genome and comparative analysis of Streptococcus gallolyticus subsp. Gallolyticus, an emerging pathogen of infective endocarditis
    • Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, et al. Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics. 2011;12:400.
    • (2011) BMC Genomics , vol.12 , pp. 400
    • Hinse, D.1    Vollmer, T.2    Rückert, C.3    Blom, J.4    Kalinowski, J.5    Knabbe, C.6
  • 67
    • 0038316363 scopus 로고    scopus 로고
    • Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: Description of Streptococcus gallolyticus subsp. Gallolyticus subsp. Nov., S. Gallolyticus subsp. Macedonicus subsp. Nov. And S. Gallolyticus subsp. Pasteurianus subsp. Nov
    • Schlegel L, Grimont F, Ageron E, Grimont PA, Bouvet A. Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: description of Streptococcus gallolyticus subsp. gallolyticus subsp. nov., S. gallolyticus subsp. macedonicus subsp. nov. and S. gallolyticus subsp. pasteurianus subsp. nov. Int J Syst Evol Microbiol. 2003;53(Pt 3):631-45.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 631-645
    • Schlegel, L.1    Grimont, F.2    Ageron, E.3    Grimont, P.A.4    Bouvet, A.5
  • 69
    • 84864464109 scopus 로고    scopus 로고
    • MicrobesFlux: A web platform for drafting metabolic models from the KEGG database
    • Feng X, Xu Y, Chen Y, Tang YJ. MicrobesFlux: a web platform for drafting metabolic models from the KEGG database. BMC Syst Biol. 2012;6:94.
    • (2012) BMC Syst Biol. , vol.6 , pp. 94
    • Feng, X.1    Xu, Y.2    Chen, Y.3    Tang, Y.J.4
  • 70
    • 0027439895 scopus 로고
    • Taxonomic distinction of saccharolytic thermophilic anaerobes: Description of Thermoanaerobacterium xylanolyticum gen. Nov., sp. Nov., and Thermoanaerobacterium saccharolyticum gen. Nov., sp. Nov.
    • reclassification of Thermoanaerobium brockii, Clostridium thermosulfurogenes, and Clostridium thermohydrosulfuricum E100-69 as Thermoanaerobacter brockii comb. Nov., Thermoanaerobacterium thermosulfurigenes comb. Nov., and Thermoanaerobacter thermohydrosulfuricus comb. Nov., respectively; and transfer of Clostridium thermohydrosulfuricum 39E to Thermoanaerobacter ethanolicus
    • Lee YE, Jain MK, Lee C, Zeikus JG. Taxonomic distinction of saccharolytic thermophilic anaerobes: description of Thermoanaerobacterium xylanolyticum gen. nov., sp. nov., and Thermoanaerobacterium saccharolyticum gen. nov., sp. nov.; reclassification of Thermoanaerobium brockii, Clostridium thermosulfurogenes, and Clostridium thermohydrosulfuricum E100-69 as Thermoanaerobacter brockii comb. nov., Thermoanaerobacterium thermosulfurigenes comb. nov., and Thermoanaerobacter thermohydrosulfuricus comb. nov., respectively; and transfer of Clostridium thermohydrosulfuricum 39E to Thermoanaerobacter ethanolicus. Int J Syst Bacteriol. 1993;43:41-51.
    • (1993) Int J Syst Bacteriol. , vol.43 , pp. 41-51
    • Lee, Y.E.1    Jain, M.K.2    Lee, C.3    Zeikus, J.G.4
  • 71
    • 33644915865 scopus 로고    scopus 로고
    • Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum
    • Kosaka T, Uchiyama T, Ishii S, Enoki M, Imachi H, Kamagata Y, et al. Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum. J Bacteriol. 2006;188(1):202-10.
    • (2006) J Bacteriol , vol.188 , Issue.1 , pp. 202-210
    • Kosaka, T.1    Uchiyama, T.2    Ishii, S.3    Enoki, M.4    Imachi, H.5    Kamagata, Y.6
  • 72
    • 40449133247 scopus 로고    scopus 로고
    • The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota
    • Kosaka T, Kato S, Shimoyama T, Ishii S, Abe T, Watanabe K. The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota. Genome Res. 2008;18(3):442-8.
    • (2008) Genome Res. , vol.18 , Issue.3 , pp. 442-448
    • Kosaka, T.1    Kato, S.2    Shimoyama, T.3    Ishii, S.4    Abe, T.5    Watanabe, K.6
  • 73
    • 79951904581 scopus 로고    scopus 로고
    • Comparison of the mesophilic cellulosome-producing Clostridium cellulovorans genome with other cellulosome-related clostridial genomes
    • Tamaru Y, Miyake H, Kuroda K, Nakanishi A, Matsushima C, Doi RH, et al. Comparison of the mesophilic cellulosome-producing Clostridium cellulovorans genome with other cellulosome-related clostridial genomes. Microb Biotechnol. 2011;4(1):64-73.
    • (2011) Microb Biotechnol. , vol.4 , Issue.1 , pp. 64-73
    • Tamaru, Y.1    Miyake, H.2    Kuroda, K.3    Nakanishi, A.4    Matsushima, C.5    Doi, R.H.6
  • 74
  • 75
    • 84869120067 scopus 로고    scopus 로고
    • Genome sequence of the thermophile Bacillus coagulans Hammer, the type strain of the species
    • Su F, Tao F, Tang H, Xu P. Genome sequence of the thermophile Bacillus coagulans Hammer, the type strain of the species. J Bacteriol. 2012;194(22):6294-5.
    • (2012) J Bacteriol. , vol.194 , Issue.22 , pp. 6294-6295
    • Su, F.1    Tao, F.2    Tang, H.3    Xu, P.4
  • 76
    • 80053452303 scopus 로고    scopus 로고
    • Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1)
    • Djao OD, Zhang X, Lucas S, Lapidus A, Del Rio TG, Nolan M, et al. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). Stand Genomic Sci. 2010;3(3):268-75.
    • (2010) Stand Genomic Sci. , vol.3 , Issue.3 , pp. 268-275
    • Djao, O.D.1    Zhang, X.2    Lucas, S.3    Lapidus, A.4    Del, R.T.G.5    Nolan, M.6
  • 77
    • 64749090232 scopus 로고    scopus 로고
    • Effect of biowaste sludge maturation on the diversity of thermophilic Bacteria and Archaea in an anaerobic reactor
    • Goberna M, Insam H, Franke-Whittle IH. Effect of biowaste sludge maturation on the diversity of thermophilic Bacteria and Archaea in an anaerobic reactor. Appl Environ Microbiol. 2009;75(8):2566-72.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.8 , pp. 2566-2572
    • Goberna, M.1    Insam, H.2    Franke-Whittle, I.H.3
  • 78
    • 0344631636 scopus 로고    scopus 로고
    • Fungal volatiles as indicators of food and feeds spoilage
    • Schnürer J, Olsson J, Börjesson T. Fungal volatiles as indicators of food and feeds spoilage. Fungal Genet Biol. 1999;27(2-3):209-17.
    • (1999) Fungal Genet Biol. , vol.27 , Issue.2-3 , pp. 209-217
    • Schnürer, J.1    Olsson, J.2    Börjesson, T.3
  • 79
    • 79957514960 scopus 로고    scopus 로고
    • Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: Genome plasticity, adaptation and virulence
    • Lin IH, Liu TT, Teng YT, Wu HL, Liu YM, Wu KM, et al. Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence. PLoS One. 2011;6(5):e20519.
    • (2011) PLoS One , vol.6 , Issue.5 , pp. e20519
    • Lin, I.H.1    Liu, T.T.2    Teng, Y.T.3    Wu, H.L.4    Liu, Y.M.5    Wu, K.M.6
  • 80
    • 79953311167 scopus 로고    scopus 로고
    • Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays
    • Zheng X, Zheng H, Lan R, Ye C, Wang Y, Zhang J, et al. Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays. PLoS One. 2011;6(3):e17987.
    • (2011) PLoS One , vol.6 , Issue.3 , pp. e17987
    • Zheng, X.1    Zheng, H.2    Lan, R.3    Ye, C.4    Wang, Y.5    Zhang, J.6
  • 81
    • 79961207559 scopus 로고    scopus 로고
    • Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
    • Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, et al. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 2011;155(1):50-62.
    • (2011) J Biotechnol. , vol.155 , Issue.1 , pp. 50-62
    • Wibberg, D.1    Blom, J.2    Jaenicke, S.3    Kollin, F.4    Rupp, O.5    Scharf, B.6
  • 83
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460-1.
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2460-2461
    • Edgar, R.C.1
  • 85
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73(16):5261-7.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 86
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR. Infernal 1.0: inference of RNA alignments. Bioinformatics. 2009;25(10):1335-7.
    • (2009) Bioinformatics , vol.25 , Issue.10 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 87
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009;26(7):1641-50.
    • (2009) Mol Biol Evol. , vol.26 , Issue.7 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.