-
1
-
-
8844260402
-
Molecular functions of conserved aspects of the GHMP kinase family
-
II
-
Andreassi JL, II, Leyh TS. 2004. Molecular functions of conserved aspects of the GHMP kinase family. Biochemistry 43:14594-14601.
-
(2004)
Biochemistry
, vol.43
, pp. 14594-14601
-
-
Andreassi, J.L.1
Leyh, T.S.2
-
3
-
-
40849135777
-
Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities
-
Bonner CA, et al. 2008. Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities. Microbiol. Mol. Biol. Rev. 72:13-53.
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 13-53
-
-
Bonner, C.A.1
-
4
-
-
0027404023
-
Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases
-
Bork P, Sander C, Valencia A. 1993. Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases. Protein Sci. 2:31-40.
-
(1993)
Protein Sci.
, vol.2
, pp. 31-40
-
-
Bork, P.1
Sander, C.2
Valencia, A.3
-
5
-
-
17844401480
-
A comprehensive update of the sequence and structure classification of kinases
-
Cheek S, Ginalski K, Zhang H, Grishin NV. 2005. A comprehensive update of the sequence and structure classification of kinases.BMCStruct. Biol. 5:6.
-
(2005)
BMCStruct. Biol.
, vol.5
, pp. 6
-
-
Cheek, S.1
Ginalski, K.2
Zhang, H.3
Grishin, N.V.4
-
6
-
-
0036305943
-
Sequence and structure classification of kinases
-
Cheek S, Zhang H, Grishin NV. 2002. Sequence and structure classification of kinases. J. Mol. Biol. 320:855-881.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 855-881
-
-
Cheek, S.1
Zhang, H.2
Grishin, N.V.3
-
7
-
-
33750041322
-
Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
-
Conners SB, et al. 2006. Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species. FEMS Microbiol. Rev. 30:872-905.
-
(2006)
FEMS Microbiol. Rev.
, vol.30
, pp. 872-905
-
-
Conners, S.B.1
-
8
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics
-
doi: 10.1093/nar/gkp919
-
Dehal PS, et al. 2010. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38:D396-D400. doi: 10.1093/nar/gkp919.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Dehal, P.S.1
-
9
-
-
0035158003
-
Thermotoga maritima phosphofructokinases: expression and characterization of two unique enzymes
-
Ding YR, Ronimus RS, Morgan HW. 2001. Thermotoga maritima phosphofructokinases: expression and characterization of two unique enzymes. J. Bacteriol. 183:791-794.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 791-794
-
-
Ding, Y.R.1
Ronimus, R.S.2
Morgan, H.W.3
-
11
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, et al. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59:307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
-
12
-
-
0036236977
-
ATP-dependent 6-phosphofructokinase from thehyperthermophilic bacterium Thermotoga maritima: characterization of an extremely thermophilic, allosterically regulated enzyme
-
Hansen T, Musfeldt M, Schonheit P. 2002. ATP-dependent 6-phosphofructokinase from thehyperthermophilic bacterium Thermotoga maritima: characterization of an extremely thermophilic, allosterically regulated enzyme. Arch. Microbiol. 177:401-409.
-
(2002)
Arch. Microbiol.
, vol.177
, pp. 401-409
-
-
Hansen, T.1
Musfeldt, M.2
Schonheit, P.3
-
13
-
-
0642285645
-
ATP-dependent glucokinase from the hyperthermophilic bacterium Thermotoga maritima represents an extremely thermophilic ROK glucokinase with high substrate specificity
-
Hansen T, Schonheit P. 2003. ATP-dependent glucokinase from the hyperthermophilic bacterium Thermotoga maritima represents an extremely thermophilic ROK glucokinase with high substrate specificity. FEMS Microbiol. Lett. 226:405-411.
-
(2003)
FEMS Microbiol. Lett.
, vol.226
, pp. 405-411
-
-
Hansen, T.1
Schonheit, P.2
-
14
-
-
10744221600
-
Substrate specificity and mechanism from the structure of Pyrococcus furiosus galactokinase
-
Hartley A, et al. 2004. Substrate specificity and mechanism from the structure of Pyrococcus furiosus galactokinase. J. Mol. Biol. 337:387-398.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 387-398
-
-
Hartley, A.1
-
15
-
-
0034040685
-
Molecular cloning and characterization of murine and human Nacetylglucosamine kinase
-
Hinderlich S, Berger M, Schwarzkopf M, Effertz K, Reutter W. 2000. Molecular cloning and characterization of murine and human Nacetylglucosamine kinase. Eur. J. Biochem. 267:3301-3308.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 3301-3308
-
-
Hinderlich, S.1
Berger, M.2
Schwarzkopf, M.3
Effertz, K.4
Reutter, W.5
-
16
-
-
38649092410
-
Dendroscope: an interactive viewer for large phylogenetic trees
-
doi:10.1186/1471-2105-8-460
-
Huson DH, et al. 2007. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics 8:460. doi:10.1186/1471-2105-8-460.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
-
17
-
-
0037477763
-
Comparative analysis of pyruvate kinases from the hyperthermophilic archaea Archaeoglobus fulgidus, Aeropyrum pernix, and Pyrobaculum aerophilum and the hyperthermophilic bacterium Thermotoga maritima: unusual regulatory properties in hyperthermophilic archaea
-
Johnsen U, Hansen T, Schonheit P. 2003. Comparative analysis of pyruvate kinases from the hyperthermophilic archaea Archaeoglobus fulgidus, Aeropyrum pernix, and Pyrobaculum aerophilum and the hyperthermophilic bacterium Thermotoga maritima: unusual regulatory properties in hyperthermophilic archaea. J. Biol. Chem. 278:25417-25427.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 25417-25427
-
-
Johnsen, U.1
Hansen, T.2
Schonheit, P.3
-
18
-
-
0037129833
-
Cloning, expression and characterization of L-arabinose isomerase from Thermotoga neapolitana: bioconversion of D-galactose to Dtagatose using the enzyme
-
Kim BC, et al. 2002. Cloning, expression and characterization of L-arabinose isomerase from Thermotoga neapolitana: bioconversion of D-galactose to Dtagatose using the enzyme. FEMS Microbiol. Lett. 212:121-126.
-
(2002)
FEMS Microbiol. Lett.
, vol.212
, pp. 121-126
-
-
Kim, B.C.1
-
19
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
-
Kitagawa M, et al. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299.
-
(2005)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
-
20
-
-
0037015054
-
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
-
U.S.A.
-
Lesley SA, et al. 2002. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc. Natl. Acad. Sci. U. S. A. 99:11664-11669.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11664-11669
-
-
Lesley, S.A.1
-
21
-
-
2542594077
-
Identifying latent enzyme activities: substrate ambiguity within modern bacterial sugar kinases
-
Miller BG, Raines RT. 2004. Identifying latent enzyme activities: substrate ambiguity within modern bacterial sugar kinases. Biochemistry 43: 6387-6392.
-
(2004)
Biochemistry
, vol.43
, pp. 6387-6392
-
-
Miller, B.G.1
Raines, R.T.2
-
22
-
-
23844503225
-
Reconstitution of a defunct glycolytic pathway via recruitment of ambiguous sugar kinases
-
Miller BG, Raines RT. 2005. Reconstitution of a defunct glycolytic pathway via recruitment of ambiguous sugar kinases. Biochemistry 44:10776-10783.
-
(2005)
Biochemistry
, vol.44
, pp. 10776-10783
-
-
Miller, B.G.1
Raines, R.T.2
-
23
-
-
33144472334
-
Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars
-
Nanavati DM, Thirangoon K, Noll KM. 2006. Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars. Appl. Environ. Microbiol. 72:1336-1345.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1336-1345
-
-
Nanavati, D.M.1
Thirangoon, K.2
Noll, K.M.3
-
24
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
Nelson KE, et al. 1999. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
-
25
-
-
3042735789
-
Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat
-
Nguyen TN, et al. 2004. Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat. J. Bacteriol. 186:4824-4828.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4824-4828
-
-
Nguyen, T.N.1
-
26
-
-
75549086541
-
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
-
doi:10.1093/nar/gkp894
-
Novichkov PS, et al. 2010. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38:D111-D118. doi:10.1093/nar/gkp894.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Novichkov, P.S.1
-
27
-
-
77954254495
-
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
-
doi:10.1093/nar/gkq531
-
Novichkov PS, et al. 2010. RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38:W299-W307. doi:10.1093/nar/gkq531.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Novichkov, P.S.1
-
28
-
-
77951557120
-
Nonhomologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution
-
doi:10.1186/1745-6150-5-31
-
Omelchenko MV, Galperin MY, Wolf YI, Koonin EV. 2010. Nonhomologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution. Biol. Direct 5:31. doi:10.1186/1745-6150-5-31.
-
(2010)
Biol. Direct
, vol.5
, pp. 31
-
-
Omelchenko, M.V.1
Galperin, M.Y.2
Wolf, Y.I.3
Koonin, E.V.4
-
29
-
-
0028067923
-
Formation of functional cross-species heterodimers of ornithine decarboxylase
-
Osterman A, Grishin NV, Kinch LN, Phillips MA. 1994. Formation of functional cross-species heterodimers of ornithine decarboxylase. Biochemistry 33:13662-13667.
-
(1994)
Biochemistry
, vol.33
, pp. 13662-13667
-
-
Osterman, A.1
Grishin, N.V.2
Kinch, L.N.3
Phillips, M.A.4
-
30
-
-
0028853811
-
Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase
-
Osterman AL, et al. 1995. Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase. Biochemistry 34:13431-13436.
-
(1995)
Biochemistry
, vol.34
, pp. 13431-13436
-
-
Osterman, A.L.1
-
31
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, et al. 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33:5691-5702.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
-
32
-
-
78149415683
-
Characterization of a recombinant thermostable L: -rhamnose isomerase from Thermotoga maritima ATCC 43589 and its application in the production of L-lyxose and L-mannose
-
Park CS, Yeom SJ, Lim YR, Kim YS, Oh DK. 2010. Characterization of a recombinant thermostable L: -rhamnose isomerase from Thermotoga maritima ATCC 43589 and its application in the production of L-lyxose and L-mannose. Biotechnol. Lett. 32:1947-1953.
-
(2010)
Biotechnol. Lett.
, vol.32
, pp. 1947-1953
-
-
Park, C.S.1
Yeom, S.J.2
Lim, Y.R.3
Kim, Y.S.4
Oh, D.K.5
-
33
-
-
77956470735
-
Genomic encyclopedia of sugar utilization pathways in the Shewanella genus
-
doi:10.1186/ 1471-2164-11-494
-
Rodionov DA, et al. 2010. Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. BMC Genomics 11:494. doi:10.1186/ 1471-2164-11-494.
-
(2010)
BMC Genomics
, vol.11
, pp. 494
-
-
Rodionov, D.A.1
-
34
-
-
0028819196
-
Phosphoglycerate kinase and triosephosphate isomerase from the hyperthermophilic bacterium Thermotoga maritima form a covalent bifunctional enzyme complex
-
Schurig H, et al. 1995. Phosphoglycerate kinase and triosephosphate isomerase from the hyperthermophilic bacterium Thermotoga maritima form a covalent bifunctional enzyme complex. EMBO J. 14:442-451.
-
(1995)
EMBO J.
, vol.14
, pp. 442-451
-
-
Schurig, H.1
-
35
-
-
56349137086
-
Thermotoga maritima TM0298 is a highly thermostable mannitol dehydrogenase
-
Song SH, Ahluwalia N, Leduc Y, Delbaere LT, Vieille C. 2008. Thermotoga maritima TM0298 is a highly thermostable mannitol dehydrogenase. Appl. Microbiol. Biotechnol. 81:485-495.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.81
, pp. 485-495
-
-
Song, S.H.1
Ahluwalia, N.2
Leduc, Y.3
Delbaere, L.T.4
Vieille, C.5
-
36
-
-
80053614029
-
Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores
-
Swithers KS, et al. 2011. Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores. J. Bacteriol. 193: 5869-5870.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 5869-5870
-
-
Swithers, K.S.1
-
37
-
-
0028000790
-
Evolutionary relationships between sugar kinases and transcriptional repressors in bacteria
-
Titgemeyer F, Reizer J, Reizer A, Saier MH, Jr. 1994. Evolutionary relationships between sugar kinases and transcriptional repressors in bacteria. Microbiology 140(Pt 9):2349-2354.
-
(1994)
Microbiology
, vol.140
, Issue.PART 9
, pp. 2349-2354
-
-
Titgemeyer, F.1
Reizer, J.2
Reizer, A.3
Saier, M.H.Jr.4
-
38
-
-
12544256751
-
+ and metal-ion dependent hydrolysis by family 4 glycosidases: structural insight into specificity for phospho-beta- D-glucosides
-
+ and metal-ion dependent hydrolysis by family 4 glycosidases: structural insight into specificity for phospho-beta- D-glucosides. J. Mol. Biol. 346:423-435.
-
J. Mol. Biol.
, vol.346
, pp. 423-435
-
-
Varrot, A.1
-
39
-
-
0029018981
-
xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana
-
Vieille C, Hess JM, Kelly RM, Zeikus JG. 1995. xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana. Appl. Environ. Microbiol. 61:1867-1875.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1867-1875
-
-
Vieille, C.1
Hess, J.M.2
Kelly, R.M.3
Zeikus, J.G.4
-
40
-
-
0025828793
-
Nucleotide sequence of the Rhodobacter capsulatus fruK gene, which encodes fructose-1-phosphate kinase: evidence for a kinase superfamily including both phosphofructokinases of Escherichia coli
-
Wu LF, et al. 1991. Nucleotide sequence of the Rhodobacter capsulatus fruK gene, which encodes fructose-1-phosphate kinase: evidence for a kinase superfamily including both phosphofructokinases of Escherichia coli. J. Bacteriol. 173:3117-3127.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3117-3127
-
-
Wu, L.F.1
-
41
-
-
33749547956
-
Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis
-
Yang C, et al. 2006. Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis. J. Biol. Chem. 281:29872-29885.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29872-29885
-
-
Yang, C.1
-
42
-
-
39749093113
-
Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways
-
Yang C, Rodionov DA, Rodionova IA, Li X, Osterman AL. 2008.Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways. J. Bacteriol. 190:1773-1782.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1773-1782
-
-
Yang, C.1
Rodionov, D.A.2
Rodionova, I.A.3
Li, X.4
Osterman, A.L.5
-
43
-
-
33747844624
-
BLAST: improvements for better sequence analysis
-
doi:10.1093/nar/gkl164
-
Ye J, McGinnis S, Madden TL. 2006. BLAST: improvements for better sequence analysis. Nucleic Acids Res. 34:W6-W9. doi:10.1093/nar/gkl164.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Ye, J.1
Mcginnis, S.2
Madden, T.L.3
-
44
-
-
70349345898
-
Three-dimensional structural view of the central metabolic network of Thermotoga maritima
-
Zhang Y, et al. 2009. Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science 325:1544-1549.
-
(2009)
Science
, vol.325
, pp. 1544-1549
-
-
Zhang, Y.1
-
45
-
-
84855259681
-
The FGGY carbohydrate kinase family: insights into the evolution of functional specificities
-
e1002318, doi:10.1371/ journal.pcbi.1002318
-
Zhang Y, Zagnitko O, Rodionova I, Osterman A, Godzik A. 2011. The FGGY carbohydrate kinase family: insights into the evolution of functional specificities. PLoS Comput. Biol. 7:e1002318. doi:10.1371/ journal.pcbi.1002318.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Zhang, Y.1
Zagnitko, O.2
Rodionova, I.3
Osterman, A.4
Godzik, A.5
-
46
-
-
65249126970
-
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
-
U. S. A.
-
Zhaxybayeva O, et al. 2009. On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proc. Natl. Acad. Sci. U. S. A. 106:5865-5870.
-
(2009)
Proc. Natl. Acad. Sci.
, vol.106
, pp. 5865-5870
-
-
Zhaxybayeva, O.1
|