-
1
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
-
10.1371/journal.pbio.0050016, 1821046, 17355171
-
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, et al. The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families. PLoS Biol 2007, 5(3):e16. 10.1371/journal.pbio.0050016, 1821046, 17355171.
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
Li, W.10
Jaroszewski, L.11
Cieplak, P.12
Miller, C.S.13
Li, H.14
Mashiyama, S.T.15
Joachimiak, M.P.16
van Belle, C.17
Chandonia, J.M.18
Soergel, D.A.19
Zhai, Y.20
Natarajan, K.21
Lee, S.22
Raphael, B.J.23
Bafna, V.24
Friedman, R.25
Brenner, S.E.26
Godzik, A.27
Eisenberg, D.28
Dixon, J.E.29
Taylor, S.S.30
more..
-
2
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
10.1126/science.1124234, 3027896, 16741115
-
Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. Metagenomic analysis of the human distal gut microbiome. Science 2006, 312(5778):1355-1359. 10.1126/science.1124234, 3027896, 16741115.
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
Gordon, J.I.7
Relman, D.A.8
Fraser-Liggett, C.M.9
Nelson, K.E.10
-
3
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
10.1038/nature06810, 18337718
-
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F. Functional metagenomic profiling of nine biomes. Nature 2008, 452(7187):629-632. 10.1038/nature06810, 18337718.
-
(2008)
Nature
, vol.452
, Issue.7187
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
Furlan, M.7
Desnues, C.8
Haynes, M.9
Li, L.10
McDaniel, L.11
Moran, M.A.12
Nelson, K.E.13
Nilsson, C.14
Olson, R.15
Paul, J.16
Brito, B.R.17
Ruan, Y.18
Swan, B.K.19
Stevens, R.20
Valentine, D.L.21
Thurber, R.V.22
Wegley, L.23
White, B.A.24
Rohwer, F.25
more..
-
4
-
-
34147097933
-
Metagenomics. Massive microbial sequence project proposed
-
Pennisi E. Metagenomics. Massive microbial sequence project proposed. Science 2007, 315(5820):1781.
-
(2007)
Science
, vol.315
, Issue.5820
, pp. 1781
-
-
Pennisi, E.1
-
5
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
10.1126/science.1107851, 15845853
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. Comparative metagenomics of microbial communities. Science 2005, 308(5721):554-557. 10.1126/science.1107851, 15845853.
-
(2005)
Science
, vol.308
, Issue.5721
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
6
-
-
53649106195
-
Next-generation DNA sequencing
-
10.1038/nbt1486, 18846087
-
Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26(10):1135-1145. 10.1038/nbt1486, 18846087.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.10
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
7
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
8
-
-
79958154818
-
FR-HIT, a Very Fast Program to Recruit Metagenomic Reads to Homologous Reference Genomes
-
Niu B, Zhu Z, Fu L, Wu S, Li W. FR-HIT, a Very Fast Program to Recruit Metagenomic Reads to Homologous Reference Genomes. Bioinformatics 2011, 27(12).
-
(2011)
Bioinformatics
, vol.27
, Issue.12
-
-
Niu, B.1
Zhu, Z.2
Fu, L.3
Wu, S.4
Li, W.5
-
9
-
-
33845957530
-
Accurate phylogenetic classification of variable-length DNA fragments
-
10.1038/nmeth976, 17179938
-
McHardy AC, Martin HG, Tsirigos A, Hugenholtz P, Rigoutsos I. Accurate phylogenetic classification of variable-length DNA fragments. Nat Methods 2007, 4(1):63-72. 10.1038/nmeth976, 17179938.
-
(2007)
Nat Methods
, vol.4
, Issue.1
, pp. 63-72
-
-
McHardy, A.C.1
Martin, H.G.2
Tsirigos, A.3
Hugenholtz, P.4
Rigoutsos, I.5
-
10
-
-
42449162998
-
Phylogenetic classification of short environmental DNA fragments
-
10.1093/nar/gkn038, 2367736, 18285365
-
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res 2008, 36(7):2230-2239. 10.1093/nar/gkn038, 2367736, 18285365.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.7
, pp. 2230-2239
-
-
Krause, L.1
Diaz, N.N.2
Goesmann, A.3
Kelley, S.4
Nattkemper, T.W.5
Rohwer, F.6
Edwards, R.A.7
Stoye, J.8
-
11
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
10.1101/gr.5969107, 1800929, 17255551
-
Huson DH, Auch AF, Qi J, Schuster SC. MEGAN analysis of metagenomic data. Genome Res 2007, 17(3):377-386. 10.1101/gr.5969107, 1800929, 17255551.
-
(2007)
Genome Res
, vol.17
, Issue.3
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
12
-
-
34249794257
-
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
-
10.1038/nmeth1043, 17468765
-
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods 2007, 4(6):495-500. 10.1038/nmeth1043, 17468765.
-
(2007)
Nat Methods
, vol.4
, Issue.6
, pp. 495-500
-
-
Mavromatis, K.1
Ivanova, N.2
Barry, K.3
Shapiro, H.4
Goltsman, E.5
McHardy, A.C.6
Rigoutsos, I.7
Salamov, A.8
Korzeniewski, F.9
Land, M.10
Lapidus, A.11
Grigoriev, I.12
Richardson, P.13
Hugenholtz, P.14
Kyrpides, N.C.15
-
13
-
-
39049092823
-
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
-
10.1186/1471-2105-9-34, 2238731, 18215273
-
Schloss PD, Handelsman J. A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. BMC Bioinformatics 2008, 9:34. 10.1186/1471-2105-9-34, 2238731, 18215273.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 34
-
-
Schloss, P.D.1
Handelsman, J.2
-
14
-
-
33750976398
-
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
-
10.1093/nar/gkl723, 1636498, 17028096
-
Noguchi H, Park J, Takagi T. MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res 2006, 34(19):5623-5630. 10.1093/nar/gkl723, 1636498, 17028096.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.19
, pp. 5623-5630
-
-
Noguchi, H.1
Park, J.2
Takagi, T.3
-
15
-
-
78651326786
-
FragGeneScan: predicting genes in short and error-prone reads
-
Rho M, Tang H, Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res 2010,
-
(2010)
Nucleic Acids Res
-
-
Rho, M.1
Tang, H.2
Ye, Y.3
-
16
-
-
65549160988
-
Identification of ribosomal RNA genes in metagenomic fragments
-
10.1093/bioinformatics/btp161, 2677747, 19346323
-
Huang Y, Gilna P, Li WZ. Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics 2009, 25(10):1338-1340. 10.1093/bioinformatics/btp161, 2677747, 19346323.
-
(2009)
Bioinformatics
, vol.25
, Issue.10
, pp. 1338-1340
-
-
Huang, Y.1
Gilna, P.2
Li, W.Z.3
-
17
-
-
77949601825
-
CD-HIT Suite: a web server for clustering and comparing biological sequences
-
10.1093/bioinformatics/btq003, 2828112, 20053844
-
Huang Y, Niu B, Gao Y, Fu L, Li W. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 2010, 26(5):680-682. 10.1093/bioinformatics/btq003, 2828112, 20053844.
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
18
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
10.1093/bioinformatics/btl158, 16731699
-
Li WZ, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22(13):1658-1659. 10.1093/bioinformatics/btl158, 16731699.
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.Z.1
Godzik, A.2
-
19
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
10.1093/bioinformatics/17.3.282, 11294794
-
Li WZ, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 2001, 17(3):282-283. 10.1093/bioinformatics/17.3.282, 11294794.
-
(2001)
Bioinformatics
, vol.17
, Issue.3
, pp. 282-283
-
-
Li, W.Z.1
Jaroszewski, L.2
Godzik, A.3
-
20
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large protein databases
-
10.1093/bioinformatics/18.1.77, 11836214
-
Li WZ, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 2002, 18(1):77-82. 10.1093/bioinformatics/18.1.77, 11836214.
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 77-82
-
-
Li, W.Z.1
Jaroszewski, L.2
Godzik, A.3
-
21
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
10.1101/gr.097261.109, 2813482, 20019144
-
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Yang H, Wang J. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010, 20(2):265-272. 10.1101/gr.097261.109, 2813482, 20019144.
-
(2010)
Genome Res
, vol.20
, Issue.2
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Yang, H.11
Wang, J.12
-
22
-
-
33744784298
-
An application of statistics to comparative metagenomics
-
10.1186/1471-2105-7-162, 1473205, 16549025
-
Rodriguez-Brito B, Rohwer F, Edwards RA. An application of statistics to comparative metagenomics. BMC Bioinformatics 2006, 7:162. 10.1186/1471-2105-7-162, 1473205, 16549025.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 162
-
-
Rodriguez-Brito, B.1
Rohwer, F.2
Edwards, R.A.3
-
23
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
-
10.1371/journal.pbio.0050077, 1821060, 17355176
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, Thorpe J, Freeman J, Andrews-Pfannkoch C, Venter JE, Li K, Kravitz S, Heidelberg JF, Utterback T, Rogers YH, Falcon LI, Souza V, Bonilla-Rosso G, Eguiarte LE, Karl DM, Sathyendranath S, et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 2007, 5(3):e77. 10.1371/journal.pbio.0050077, 1821060, 17355176.
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
Beeson, K.11
Tran, B.12
Smith, H.13
Baden-Tillson, H.14
Stewart, C.15
Thorpe, J.16
Freeman, J.17
Andrews-Pfannkoch, C.18
Venter, J.E.19
Li, K.20
Kravitz, S.21
Heidelberg, J.F.22
Utterback, T.23
Rogers, Y.H.24
Falcon, L.I.25
Souza, V.26
Bonilla-Rosso, G.27
Eguiarte, L.E.28
Karl, D.M.29
Sathyendranath, S.30
more..
-
24
-
-
54449096251
-
Probing metagenomics by rapid cluster analysis of very large datasets
-
10.1371/journal.pone.0003375, 2557142, 18846219
-
Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE 2008, 3(10):e3375. 10.1371/journal.pone.0003375, 2557142, 18846219.
-
(2008)
PLoS ONE
, vol.3
, Issue.10
-
-
Li, W.1
Wooley, J.C.2
Godzik, A.3
-
25
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
10.1128/AEM.01541-09, 2786419, 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75(23):7537-7541. 10.1128/AEM.01541-09, 2786419, 19801464.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.23
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
26
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303, 3156573, 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7(5):335-336. 10.1038/nmeth.f.303, 3156573, 20383131.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
27
-
-
71749111168
-
Analysis and comparison of very large metagenomes with fast clustering and functional annotation
-
10.1186/1471-2105-10-359, 2774329, 19863816
-
Li W. Analysis and comparison of very large metagenomes with fast clustering and functional annotation. BMC Bioinformatics 2009, 10:359. 10.1186/1471-2105-10-359, 2774329, 19863816.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 359
-
-
Li, W.1
-
28
-
-
40549120596
-
The RAST Server: rapid annotations using subsystems technology
-
10.1186/1471-2164-9-75, 2265698, 18261238
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008, 9:75. 10.1186/1471-2164-9-75, 2265698, 18261238.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
29
-
-
33947215475
-
CAMERA: A Community Resource for Metagenomics
-
10.1371/journal.pbio.0050075, 1821059, 17355175
-
Seshadri R, Kravitz SA, Smarr L, Gilna P, Frazier M. CAMERA: A Community Resource for Metagenomics. PLoS Biol 2007, 5(3):e75. 10.1371/journal.pbio.0050075, 1821059, 17355175.
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
30
-
-
77957151956
-
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
-
10.1186/1471-2105-11-485, 2956736, 20875133
-
Cox MP, Peterson DA, Biggs PJ. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 2010, 11:485. 10.1186/1471-2105-11-485, 2956736, 20875133.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
31
-
-
77950645212
-
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
-
10.1186/1471-2105-11-187, 2874554, 20388221
-
Niu B, Fu L, Sun S, Li W. Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 2010, 11:187. 10.1186/1471-2105-11-187, 2874554, 20388221.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 187
-
-
Niu, B.1
Fu, L.2
Sun, S.3
Li, W.4
-
32
-
-
0036084598
-
5S Ribosomal RNA Database
-
10.1093/nar/30.1.176, 99124, 11752286
-
Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J. 5S Ribosomal RNA Database. Nucleic Acids Res 2002, 30(1):176-178. 10.1093/nar/30.1.176, 99124, 11752286.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 176-178
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Erdmann, V.A.3
Barciszewski, J.4
-
34
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
10.1093/nar/gkm864, 2175337, 17947321
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007, 35(21):7188-7196. 10.1093/nar/gkm864, 2175337, 17947321.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.21
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
35
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
10.1093/nar/25.5.955, 146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25(5):955-964. 10.1093/nar/25.5.955, 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
36
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR. A new generation of homology search tools based on probabilistic inference. Genome Inform 2009, 23(1):205-211.
-
(2009)
Genome Inform
, vol.23
, Issue.1
, pp. 205-211
-
-
Eddy, S.R.1
-
37
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
10.1128/AEM.00062-07, 1950982, 17586664
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73(16):5261-5267. 10.1128/AEM.00062-07, 1950982, 17586664.
-
(2007)
Appl Environ Microbiol
, vol.73
, Issue.16
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
38
-
-
67249096511
-
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences
-
10.1093/nar/gkp285, 2691849, 19417062
-
Sun Y, Cai Y, Liu L, Yu F, Farrell ML, McKendree W, Farmerie W. ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 2009, 37(10):e76. 10.1093/nar/gkp285, 2691849, 19417062.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.10
-
-
Sun, Y.1
Cai, Y.2
Liu, L.3
Yu, F.4
Farrell, M.L.5
McKendree, W.6
Farmerie, W.7
-
39
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
10.1038/nature07540, 2677729, 19043404
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature 2009, 457(7228):480-U487. 10.1038/nature07540, 2677729, 19043404.
-
(2009)
Nature
, vol.457
, Issue.7228
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
Egholm, M.11
Henrissat, B.12
Heath, A.C.13
Knight, R.14
Gordon, J.I.15
-
40
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
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