-
1
-
-
0036022478
-
Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent
-
Alain K, Querellou J, Lesongeur F, Pignet P, Crassous P, Raguénès G, Cueff V, Cambon-Bonavita M-A (2002) Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 52: 1317-1323.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1317-1323
-
-
Alain, K.1
Querellou, J.2
Lesongeur, F.3
Pignet, P.4
Crassous, P.5
Raguénès, G.6
Cueff, V.7
Cambon-Bonavita, M.-A.8
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S, Gish W, Miller W, Myers E, Lipman D (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
3
-
-
83155175439
-
Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales
-
Ben Hania W, Ghodbane R, Postec A, Brochier-Armanet C, Hamdi M, Fardeau ML, Ollivier B (2011) Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales. Syst Appl Microbiol 34: 581-585.
-
(2011)
Syst Appl Microbiol
, vol.34
, pp. 581-585
-
-
Ben Hania, W.1
Ghodbane, R.2
Postec, A.3
Brochier-Armanet, C.4
Hamdi, M.5
Fardeau, M.L.6
Ollivier, B.7
-
4
-
-
84861870953
-
Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester
-
Ben Hania W, Ghodbane R, Postec A, Hamdi M, Ollivier B, Fardeau ML (2012) Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester. Int J Syst Evol Microbiol 62: 1377-1382.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 1377-1382
-
-
Ben Hania, W.1
Ghodbane, R.2
Postec, A.3
Hamdi, M.4
Ollivier, B.5
Fardeau, M.L.6
-
5
-
-
84880968479
-
Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer
-
Ben Hania W, Postec A, Aüllo T, Ranchou-Peyruse A, Erauso G, Brochier-Armanet C, Hamdi M, Ollivier B, Saint-Laurent S, Magot M, Fardeau ML (2013) Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer. Int J Syst Evol Microbiol 63: 3003-3008.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 3003-3008
-
-
Ben Hania, W.1
Postec, A.2
Aüllo, T.3
Ranchou-Peyruse, A.4
Erauso, G.5
Brochier-Armanet, C.6
Hamdi, M.7
Ollivier, B.8
Saint-Laurent, S.9
Magot, M.10
Fardeau, M.L.11
-
6
-
-
33845261493
-
A rapid method of total lipid extraction and purification
-
Bligh E, Dyer W (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37: 911-917.
-
(1959)
Can J Biochem Physiol
, vol.37
, pp. 911-917
-
-
Bligh, E.1
Dyer, W.2
-
7
-
-
0021836170
-
A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria
-
Cord-Ruwisch R (1985) A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4: 33-36.
-
(1985)
J Microbiol Methods
, vol.4
, pp. 33-36
-
-
Cord-Ruwisch, R.1
-
8
-
-
0027222020
-
Isolation of three species of Geotoga and Petrotoga: two new genera, representing a new lineage in the bacterial line of descent distantly related to the "Thermotogales
-
Davey ME, Wood WA, Key R, Nakamura K, Stahl D (1993) Isolation of three species of Geotoga and Petrotoga: two new genera, representing a new lineage in the bacterial line of descent distantly related to the "Thermotogales". Syst Appl Microbiol 16: 191-200.
-
(1993)
Syst Appl Microbiol
, vol.16
, pp. 191-200
-
-
Davey, M.E.1
Wood, W.A.2
Key, R.3
Nakamura, K.4
Stahl, D.5
-
9
-
-
0014713693
-
The quantitative measurement of DNA hybridization from renaturation rates
-
De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12: 133-142.
-
(1970)
Eur J Biochem
, vol.12
, pp. 133-142
-
-
De Ley, J.1
Cattoir, H.2
Reynaerts, A.3
-
10
-
-
72149121304
-
Kosmotogaolearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid
-
DiPippo JL, Nesbø CL, Dahle H, Doolittle WF, Birkland NK, Noll KM (2009) Kosmotogaolearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid. Int J Syst Evol Microbiol 59: 2991-3000.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2991-3000
-
-
DiPippo, J.L.1
Nesbø, C.L.2
Dahle, H.3
Doolittle, W.F.4
Birkland, N.K.5
Noll, K.M.6
-
11
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
12
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evol 30: 783-791.
-
(1985)
Evol
, vol.30
, pp. 783-791
-
-
Felsenstein, J.1
-
13
-
-
77950604465
-
Thermococcoides shengliensis gen. nov representing a novel genus of the order Thermotogales from oil-production fluid
-
Feng Y, Cheng L, Zhang X, Li X, Deng Y, Zhang H (2010) Thermococcoides shengliensis gen. nov representing a novel genus of the order Thermotogales from oil-production fluid. Int J Syst Evol Microbiol 60: 932-937.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 932-937
-
-
Feng, Y.1
Cheng, L.2
Zhang, X.3
Li, X.4
Deng, Y.5
Zhang, H.6
-
14
-
-
0001901024
-
Polyphasic taxonomy
-
2nd edn., The Archaea and the deeply branching and phototrophic Bacteria, D. R. Boone, R. W. Castenholz, and G. M. Garrity (Eds.), New York: Springer
-
Gillis M, Vandamme P, De Vos P, Swings J, Kersters K (2001) Polyphasic taxonomy. In: Boone DR, Castenholz RW, Garrity GM (eds) Bergey's manual of systematic bacteriology, vol 1, 2nd edn., The Archaea and the deeply branching and phototrophic BacteriaSpringer, New York, pp 43-48.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 43-48
-
-
Gillis, M.1
Vandamme, P.2
De Vos, P.3
Swings, J.4
Kersters, K.5
-
15
-
-
74549125386
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
16
-
-
0022522022
-
Thermotogamaritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C
-
Huber R, Langworthy TA, König H, Thomm M, Woese CR, Sleytr UB, Stetter KO (1986) Thermotogamaritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C. Arch Microbiol 144: 324-333.
-
(1986)
Arch Microbiol
, vol.144
, pp. 324-333
-
-
Huber, R.1
Langworthy, T.A.2
König, H.3
Thomm, M.4
Woese, C.R.5
Sleytr, U.B.6
Stetter, K.O.7
-
17
-
-
0001980444
-
Thermosiphoafricanus gen. nov., represents a new genus of thermophilic eubacteria within the "Thermotogales
-
Huber R, Woese CR, Langworthy TA, Fricke H, Stetter KO (1989) Thermosiphoafricanus gen. nov., represents a new genus of thermophilic eubacteria within the "Thermotogales". Syst Appl Microbiol 12: 32-37.
-
(1989)
Syst Appl Microbiol
, vol.12
, pp. 32-37
-
-
Huber, R.1
Woese, C.R.2
Langworthy, T.A.3
Fricke, H.4
Stetter, K.O.5
-
18
-
-
0020549589
-
Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
-
Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4: 184-192.
-
(1983)
Syst Appl Microbiol
, vol.4
, pp. 184-192
-
-
Huss, V.A.R.1
Festl, H.2
Schleifer, K.H.3
-
19
-
-
79952409425
-
Oceanotogateriensis gen. nov., sp. nov., a thermophilic bacterium isolated from offshore oil-producing wells
-
Jayasinghearachchi HS, Lal B (2011) Oceanotogateriensis gen. nov., sp. nov., a thermophilic bacterium isolated from offshore oil-producing wells. Int J Syst Evol Microbiol 61: 554-560.
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 554-560
-
-
Jayasinghearachchi, H.S.1
Lal, B.2
-
20
-
-
0029799185
-
Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa
-
Kämpfer P, Kroppenstedt RM (1996) Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42: 989-1005.
-
(1996)
Can J Microbiol
, vol.42
, pp. 989-1005
-
-
Kämpfer, P.1
Kroppenstedt, R.M.2
-
21
-
-
84863230041
-
Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species
-
Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716-721.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
Yi, H.10
Won, S.11
Chun, J.12
-
22
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2. 0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
23
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig W, Strunk O, Klugbauer S, Klugbauer N, Weizenegger M, Neumaier J, Bachleitner M, Schleifer KH (1998) Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19: 554-568.
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
Bachleitner, M.7
Schleifer, K.H.8
-
24
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
-
Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39: 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
25
-
-
84860836177
-
Mesotogaprima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales
-
Nesbø CL, Bradnan DM, Adebusuyi A, Dlutek M, Petrus AK, Foght J, Doolittle WF, Noll KM (2012) Mesotogaprima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales. Extremophiles 16: 387-393.
-
(2012)
Extremophiles
, vol.16
, pp. 387-393
-
-
Nesbø, C.L.1
Bradnan, D.M.2
Adebusuyi, A.3
Dlutek, M.4
Petrus, A.K.5
Foght, J.6
Doolittle, W.F.7
Noll, K.M.8
-
26
-
-
77957885245
-
Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga
-
Nunoura T, Hirai M, Imachi H, Miyazaki M, Makita H, Hirayama H, Furushima Y, Yamamoto H, Takai K (2010) Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga. Arch Microbiol 192: 811-819.
-
(2010)
Arch Microbiol
, vol.192
, pp. 811-819
-
-
Nunoura, T.1
Hirai, M.2
Imachi, H.3
Miyazaki, M.4
Makita, H.5
Hirayama, H.6
Furushima, Y.7
Yamamoto, H.8
Takai, K.9
-
27
-
-
0021906874
-
Fervidobacteriumnodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium
-
Patel BKC, Morgan HW, Daniel RM (1985) Fervidobacteriumnodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 141: 63-69.
-
(1985)
Arch Microbiol
, vol.141
, pp. 63-69
-
-
Patel, B.K.C.1
Morgan, H.W.2
Daniel, R.M.3
-
28
-
-
0000864717
-
Phylum BII. Thermotogae phy. nov
-
D. R. Boone and R. W. Castenholz (Eds.), Berlin: Springer
-
Reysenbach AL (2001) Phylum BII. Thermotogae phy. nov. In: Boone DR, Castenholz RW (eds) Bergey's manual of systematic bacteriology. Springer, Berlin, pp 369-387.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 369-387
-
-
Reysenbach, A.L.1
-
29
-
-
0023375195
-
The neighbour-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0025324750
-
A comparative study of the lipid composition of Halobacterium saccharovorum from various sources
-
Tindall B (1990a) A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13: 128-130.
-
(1990)
Syst Appl Microbiol
, vol.13
, pp. 128-130
-
-
Tindall, B.1
-
31
-
-
0025098748
-
Lipid composition of Halobacterium lacusprofundi
-
Tindall B (1990b) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66: 199-202.
-
(1990)
FEMS Microbiol Lett
, vol.66
, pp. 199-202
-
-
Tindall, B.1
-
32
-
-
65949111437
-
Phenotypic characterization and the principles of comparative systematics
-
3rd edn., C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt, and L. R. Snyder (Eds.), Washington DC: ASM Press
-
Tindall B, Sikorski J, Smibert RA, Krieg NR (2007) Phenotypic characterization and the principles of comparative systematics. In: Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds) Methods for general and molecular microbiology, 3rd edn. ASM Press, Washington DC, pp 330-393.
-
(2007)
Methods for General and Molecular Microbiology
, pp. 330-393
-
-
Tindall, B.1
Sikorski, J.2
Smibert, R.A.3
Krieg, N.R.4
-
33
-
-
0035066092
-
Marinitogacamini gen. nov., sp. nov., a rod-shaped bacterium belonging to the order Thermotogales, isolated from a deep-sea hydrothermal vent
-
Wery N, Lesongeur F, Pignet P, Derennes V, Cambon-Bonavita MA, Godfroy A, Barbier G (2001) Marinitogacamini gen. nov., sp. nov., a rod-shaped bacterium belonging to the order Thermotogales, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51: 495-504.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 495-504
-
-
Wery, N.1
Lesongeur, F.2
Pignet, P.3
Derennes, V.4
Cambon-Bonavita, M.A.5
Godfroy, A.6
Barbier, G.7
-
34
-
-
67949103703
-
Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life
-
Zeng X, Birrien JL, Fouquet Y, Cherkashov G, Jebbar M, Querellou J, Oger P, Cambon-Bonavita MA, Xiao X, Prieur D (2009) Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life. The ISME J 3: 873-876.
-
(2009)
The ISME J
, vol.3
, pp. 873-876
-
-
Zeng, X.1
Birrien, J.L.2
Fouquet, Y.3
Cherkashov, G.4
Jebbar, M.5
Querellou, J.6
Oger, P.7
Cambon-Bonavita, M.A.8
Xiao, X.9
Prieur, D.10
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