A mathematical approach to multilevel, multiscale health interventions: Pharmaceutical industry decline and policy response

A Mathematical Approach to Multilevel, Multiscale Health Interventions: Pharmaceutical Industry Decline and Policy Response

Volumn , Issue , 2013, Pages 1-225

  Wallace, Rodrick ^a   Wallace, Deborah ^a  

^a Columbia University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84967372002     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1142/P880     Document Type: Book

References (295)

1. Adami, C., N. Cerf, 2000, Physical complexity of symbolic sequences, Physica D, 137:62-69.
2. Adami, C., Ofria, T. Collier, 2000, Evolution of biological complexity, Proceedings of the National Academy of Sciences, 97:4463-4468.
3. Albert, R., A. Barabasi, 2002, Statistical mechanics of complex networks, Reviews of Modern Physics, 74:47-97.
4. Alzheimer’s Association, 2006, African-Americans and Alzheimer’s disease: the silent epidemic. www.alz.org.
5. Andre, I., C. Strauss, D. Kaplan, P. Bradley, D. Baker, 2008, Emergence of symmetry in homooligomeric biological assemblies, Proceedings of the National Academy of Sciences, 105:16148-16152.
6. Anfinsen, C., 1973, Principles that govern the folding of protein chains, Science, 181:223-230.
7. Arnett, J., 2008, The neglected 95%, The American Psychologist, 63:602-614.
8. Ash, R., 1990, Information Theory, Dover, New York.
9. Atiyah, M., I. Singer, 1963, The index of elliptical operators on compact manifolds, Bulletin of the American Mathematical Society, 69:322-433.
10. Atlan, H., I. Cohen, 1998, Immune information, self organization, and meaning, International Immunology, 10:711-717.
11. Atmanspacher, H., 2006, Toward an information theoretical implementation of contextual conditions for consciousness, Acta Biotheoretica, 54:157-160.
12. Avital, E., E. Jablonka, 2000, Animal Traditions: Behavioral Inheritance in Evolution, Cambridge University Press, New York.
13. Baars, B., 1988, A Cognitive Theory of Consciousness, Cambridge University Press, New York.
14. Baars, B., 2005, Global workspace theory of consciousness: toward a cognitive neuroscience of human experience, Progress in Brain Research, 150:45-53.
15. Baars, B., S. Franklin, 2003, How conscious experience and working memory interact, Trends in Cognitive Science, 7:166-172.
16. Backdahl, L., A. Bushell, S. Beck, 2009, Inflammatory signalling as mediator of epigenetic modulation in tissue-specific chronic inflammation, The International Journal of Biochemistry and Cell Biology, 41:176-184.
17. Balasubramanian, K., 1980, The symmetry groups of nonrigid molecules as generalized wreath products and their representations, Journal of Chemical Physics, 72:665-677.
18. Balasubramanian, K., 2004, Relativistic double group spinor representations of nonrigid molecules, Journal of Chemical Physics, 120:5524-5535.
19. Balazsi, G., A. van Oudenaarden, J. Collins, 2011, Cellular decision making and biological noise: from microbes to mammals, Cell, 144:910-925.
20. Barker, D., 2002, Fetal programming of conronary heart disease, Trends in Endocrinology and Metabolism, 13:364-372.
21. Barker, D., T. Forsen, A. Utela, C. Osmong, J. Erikson, 2002, Size at birth and resilience to effects of poor living conditions in adult life: longitudinal study, British Medical Journal, 323:1261-1262.
22. Barkow, J., L. Cosmides, J. Tooby (eds.), 1992, The Adapted Mind: Biological Approaches to Mind and Culture, University of Toronto Press, Toronto.
23. Bebbington, P., 1993, Transcultural aspects of affective disorders, International Review of Psychiatry, 5:145-156.
24. Beck, C., F. Schlogl, 1993, Thermodynamics of Chaotic Systems, Cambridge University Press, New York.
25. Begley, C., L. Ellis, 2012, Raise standards for preclinical cancer research, Nature, 483:531-533.
26. Ben-Jonathan, N., E. Hugo, T. Brandenbourg, 2009, Effects of bisphenol A on adipokine release from human adipose tissue: implications for the metabolic syndrome, Molecular Cell Endocrinology, 304:49-54.
27. Bennett, C., 1988, Logical depth and physical complexity. In R. Herkin (ed.), The Universal Turing Machine: A Half-Century Survey, Oxford University Press, Oxford, pp. 227-257.
28. Bernstein Research, 2010, The Long View - R & D Productivity, Boston.
29. Billingsley, P., 1968, Convergence of Probability Measures, John Wiley and Sons, New York.
30. Binney, J., N. Dowrick, A. Fisher, M. Newman, 1992, The Theory of Critical Phenomena, Clarendon Press, Oxford.
31. Bjorntorp, P., 2001, Do stress reactions cause abdominal obesity and comorbidities? Obesity Reviews, 2:73-86.
32. Boccaletti, S., V. Latora, Y. Moreno, M. Chavez, D. Hwang, 2006, Complex networks: structure and dynamics, Physics Reports, 424:175-208.
33. Bonner, J., 1980, The Evolution of Culture in Animals, Princeton University Press, Princeton.
34. Borkar, S., 2007, Thousand core chips - a technology perspective, DAC 2007, ACM 978-1-59593-627-1/01/0006
35. Bos, R., 2007, Continuous representations of groupoids, arXiv:math/ 0612639.
36. Brock, C., S. Salinsky, 1993, Empathy: an essential skill for understanding the physician-patient relationship in clinical practice, Family Medicine, 25:245-248.
37. Brown, G., T. Harris, J. Peto, 1973, Life events and psychiatric disorders, II: nature of causal link, Psychological Medicine, 3:159-176.
38. Brown, R., 1987, From groups to groupoids: a brief survey, Bulletin of the London Mathematical Society, 19:113-134.
39. Buneci, M., 2003, Representare de Groupoizi, Editura Mirton, Timosoara.
40. Burns, J., D. Job, M. Bastin, H. Whalley, T. Macgillivary, E. Johnstone, S. Lawrie, 2003, Structural disconnectivity in schizophrenia: a diffusion tensor magnetic resonance imaging study, British Journal of Psychiatry, 182:439-443.
41. Byers, N., 1999, E. Noether’s discovery of the deep connection between symmetries and conservation laws, Israel Mathematical Conference Proceedings, Vol. 12. arXiv physics/9807044.
42. Byrk, A., S. Raudenbusck, 2001, Hierarchical linear models: applications and data analysis methods, Sage Publications, New York.
43. Cannas Da Silva, A., A.Weinstein, 1999, Geometric Models for Noncommutative Algebras, American Mathematical Society, Providence.
44. Caspi, A., T. Moffitt, 2002, Role of genotype in the cycle of violence in maltreated children, Science, 297:851-854.
45. Caspi, A., K. Sugden, T. Moffitt, 2003, Influence of life stress on depression: moderation by a polymorphism in the 5-HTT gene, Science, 301:386-389.
46. Caspi, A., T. Moffitt, 2006, Gene-environment interactions in psychiatry: joining forces with neuroscience, Nature Reviews Neuroscience, 7:583-590.
47. CDC, 2003, 1991-2001 Prevalence of Obesity Among US Adults, by Characteristics: Behavioral Risk Factor Surviellance System, Self Reported Data.
48. Champagnat, N., R. Ferriere, S. Meleard, 2006, Unifying evolutionary dynamics: from individual stochastic process to macroscopic models, Theoretical Population Biology, 69:297-321.
49. Chiang, M., S. Boyd, 2004, Geometric programming duals of channel capacity and rate distortion, IEEE Transactions on Information Theory, 50:245-255.
50. Chien, P., J. Weissman, 2001, Conformational diversity in a yeast prion dictates its seeding specificity, Nature, 410:223-227.
51. Chou, K.C., G. Maggiora, 1998, Domain structural class prediction, Protein Engineering, 11:523-528.
52. Clougherty, J., J. Levy, L. Kubzansky, P. Ryan, S. Suglia, M. Canner, R. Wright, 2007, Synergistic effects of traffic-related air pollution and exposure to violence on urban asthma etiology, Environmental Health Perspectives, 115:1140-1146.
53. Cohen, I., 1992, The cognitive principle challenges clonal selection, Immunology Today, 13:441-444.
54. Cohen, I., 2000, Tending Adam’s Garden: Evolving the Cognitive Immune Self, Academic Press, New York.
55. Cohen, I., 2006, Immune system computation and the immunological homunculus. In Nierstrasz, O., J. Whittle, D. Harel, G. Reggio (eds.), MoDELS 2006, LNCS, vol. 4199, Springer, Heidelberg, pp. 499-512.
56. Cohen, I., D. Harel, 2007, Explaining a complex living system: dynamics, multi-scaling, and emergence. Journal of the Royal Society: Interface, 4:175-182.
57. Cohen, M., A. Varki, 2010, The sialome-far more than the sum of its parts, OMICS, 14:455-464.
58. Coplan, J., 2005, personal communication.
59. Cordes, M., R. Burton, N. Walsh, C. McKnight, R. Sauer, 2000, An evolutionary bridge to a new protein fold, Nature Structural Biology, 7:1129-1132.
60. Courchesne, E., K. Pierce, 2005, Why the frontal cortex in autism might be talking only to itself, Current Opinion in Neurobiology, 15:225-230.
61. Cover, T., J. Thomas, 2006, Elements of Information Theory, Second Edition, Wiley, New York.
62. Cummings, R., 2009, The repertoire of glycan determinants in the human glycome, Molecular Biosystems, 5:1087-1104.
63. Dam, T., T. Gerken, B. Cavada, K. Nascimento, T. Moura, C.F. Brewer, 2007, Binding studies of α-GalNAc-specific lectins to the α-GalNAc(Tn-antigen) form of porcine submaxilary mucin and its smaller fragments, Journal of Biological Chemistry, 38:28256-28263.
64. Dam, T., C.F. Brewer, 2008, Effects of clustered epitopes in multivalent ligand-receptor interactions, Biochemistry, 47:8470-8476.
65. Dam, T., C.F. Brewer, 2010, Lectins as pattern recognition molecules: The effects of epitope density in innate immunity, Glycobiology, 20:270-279.
66. de Groot, S., P. Mazur, 1984, Non-Equilibrium Thermodynamics, Dover, New York.
67. Dembo, A., O. Zeitouni, 1998, Large Deviations and Applications, Springer, New York.
68. Diekmann U., R. Law, 1996, The dynamical theory of coevolution: a derivation from stochastic ecological processes, Journal of Mathematical Biology, 34:579-612.
69. Dietrich, K., R. Douglas, P. Succop, O. Berger, R. Bornschein, 2001, Early exposure to lead and juvenile delinquency, Neurotoxicology and Teratology, 23:511-518.
70. Dill, K., S. Banu Ozkan, T. Weikl, J. Chodera, V. Voelz, 2007, The protein folding problem: when will it be solved? Current Opinion in Structural Biology, 17:342-346.
71. Dobson, C., 2003, Protein folding and misfolding, Nature, 426:884-890.
72. Dohrenwend, B.P., B.S. Dohrenwend, 1974, Social and cultural influences on psychopathology, Annual Review of Psychology, 25:417-452.
73. Downing, R., K. Rickels, 1982, The impact of favorable and unfavorable life events on psychotropic drug response, Psychopharmacology, 78:97-100.
74. Dretske, F., 1994, The explanatory role of information, Philosophical Transactions of the Royal Society A, 349:59-70.
75. DSM-IV, 1994, Diagnostic and Statistical Manual, Fourth Edition, American Psychiatric Association, Washington, DC.
76. Durham, W., 1991, Coevolution: Genes, Culture, and Human Diversity, Stanford University Press, Palo Alto.
77. Eaton, W., 1978, Life events, social supports, and psychiatric symptoms: a reanalysis of the New Haven data, Journal of Health and Social Behavior, 19:230-234.
78. Eldredge, N., S. Gould, 1972, Punctuated equilibrium: an alternative to phyletic gradualism. In T. Schopf (ed.), Models in Paleobiology, Freeman, Cooper and Co., San Francisco, pp. 82-115.
79. El Gamal, A., Y. Kim, 2010, Lecture Notes on Network Information Theory, arXiv:1001.3404v4.
80. Ellis, R., 1985, Entropy, Large Deviations, and Statistical Mechanics, Springer, New York.
81. English, T., 1996, Evaluation of evolutionary and genetic optimizers: no free lunch. In Fogel, L., P. Angeline, T. Back (eds.), Evolutionary Programming V: Proceedings of the Fifth Annual Conference on Evolutionary Programming, MIT Press, Cambridge, MA, pp. 163-169.
82. Erdos, P., A. Renyi, 1960, On the evolution of random graphs, Magyar Tud. Akad. Mat. Kutato Int. Kozl, 5:17-61.
83. Ewens, W., 2004, Mathematical Population Genetics, Springer, New York.
84. Fanon F., 1966, The Wretched of the Earth, Evergreen Press, New York.
85. Feller, W., 1971, An Introduction to Probability Theory and its Applications, John Wiley and Sons, New York.
86. Feynman, R., 2000, Lectures on Computation, Westview Press, New York.
87. Fillit, H., D. Nash, T. Rundek, A. Zukerman, 2008, Cardiovascular risk factors and dementia, American Journal of Geriatric Pharmacotherapy, 6:100-118.
88. Fodor, J., M. Piattelli-Palmarini, 2010, What Darwin Got Wrong, Farrar, Straus, and Giroux, New York.
89. Foley, D., J. Craid, R. Morley, C. Olsson, T. Dwyer, K. Smith, R. Saffery, 2009, Prospects for epigenetic epidemiology, American Journal of Epidemiology, 169:389-400.
90. Forlenza, M., A. Baum, 2000, Psychosocial influences on cancer progression: alternative cellular and molecular mechanisms, Current Opinion in Psychiatry, 13:639-645.
91. Fredlin, M., A. Wentzell, 1998, Random Perturbations of Dynamical Systems, Springer, New York.
92. Fullilove, M., 2004, Root Shock: How Tearing Up City Neighborhoods Hurts America and What We Can Do About It, Balantine Books, New York.
93. Fullilove, M., R. Wallace, 2011, Serial forced displacement in American cities, 1916-2010, Journal of Urban Health, 88:381-389.
94. Gilbert, P., 2001, Evolutionary approaches to psychopathology: the role of natural defenses, Australian and New Zealand Journal of Psychiatry, 35:17-27.
95. Glass, T., K. Bandeen-Roche, M. McAtee, K. Bolla, A. Todd, B. Schwartz, 2009, Neighborhood psychosocial hazards and the association of cumulative lead dose with cognitive function in older adults, American Journal of Epidemiology, 169:683-692.
96. Glazebrook, J.F., R. Wallace, 2009a, Rate distortion manifolds as model spaces for cognitive information, Informatica, 33:309-346.
97. Glazebrook, J.F., R. Wallace, 2009b, Small worlds and red queens in the global workspace: an information-theoretic approach, Cognitive Systems Research, 10:333-365.
98. Gluckman, B., T. Netoff, E. Neel, W. Ditto, M. Spano, S. Schiff, 1996, Stochastic resonance in a neuronal network from mammalian brain, Physical Review Letters, 77:4098-4101.
99. Goldschmidt, L., P. Teng, R. Riek, D. Eisenberg, 2010, Identifying the amylome, proteins capable of forming amyloid-like fibrils, Proceedings of the National Academy of Sciences, 107:3487-3492.
100. Golubitsky, M., I. Stewart, 2006, Nonlinear dynamics and networks: the groupoid formalism, Bulletin of the American Mathematical Society, 43:305-364.
101. Gomez, J., M. Verdu, F. Perfectti, 2010, Ecological interactions are evolutionarily conserved across the entire tree of life, Nature, 465:918-921.
102. Goodsell, D., A. Olson, 2000, Structural symmetry and protein function, Annual Reviews of Biophysics and Biomolecular Structure, 29:105-153.
103. Gordon A., 2000, Cultural identity and illness: Fulani views, Culture, Medicine and Psychiatry, 24:297-330.
104. Gould, S., R. Lewontin, 1979, The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme, Proceedings of the Royal Society of London, B, 205:581-598.
105. Gould, S., 2002, The Structure of Evolutionary Theory, Harvard University Press, Cambridge, MA.
106. Gunderson, L., 2000, Ecological resilience - in theory and application, Annual Reviews of Ecological Systematics, 31:425-439.
107. Gupta, G., A. Surolia, S. Sampath Kumar, 2010, Lectin microarrays for glycomic analysis, OMICS, 14:419-436.
108. Haataja, L., T. Gurlo, C. Huang, P. Butler, 2008, Islet amyloid in type 2 diabetes, and the toxic oligomer hypothesis, Endocrine Reviews, 29:303-316.
109. Haller, J., J. Halasz, 2000, Effects of two acute stressors on the anxiolytic efficacy of chlordiazepoxide, Psychopharmacology, 151:1-6.
110. Haller, J., 2001, The link between stress and the efficacy of anxiolytics: a new avenue of research, Physiology and Behavior, 73:337-342.
111. Hart, G., R. Copeland, 2010, Glycomics hits the big time, Cell, 143:672-676.
112. Hartl, D., A. Clark, 1997, Principles of population genetics, Sinaur Associates, Sunderland, MA.
113. Hazewinkel, M., 2002, Encyclopedia of Mathematics, ‘Index Formulas’, Springer, New York.
114. Hecht, M., A. Das, A. Go, L. Aradley, Y. Wei, 2004, De novo proteins from designed combinatorial libraries, Protein Science, 13:1711-1723.
115. Heine, S., 2001, Self as cultural product: an examination of East Asian and North American selves, Journal of Personality, 69:881-906.
116. Henrich J., S. Heine, A. Norenzayan, 2010, The weirdest people in the world? Behavioral and Brain Sciences, 33:61-83.
117. Hill, J., H. Wyatt, G. Reed, J. Peters, 2003, Obesity and the environment: where do we go from here? Science, 266:853-858.
118. Holling, C., 1973, Resilience and stability of ecological systems, Annual Reviews of Ecological Systematics, 4:1-23.
119. Holling, C., 1992, Cross-scale morphology, geometry, and dynamics of ecosystems, Ecological Monographs, 62:447-502.
120. Horrobin, D., 2003, Modern biomedical research: an internally self-consistent universe with little contact with medical reality?, Nature Reviews: Drug Discovery, 2:151-154.
121. Houghton, C., 1975, Wreath products of groupoids, Journal of the London Mathematical Society, S2-10(2):179-188.
122. Ikeda, N., S. Watanabe, 1989, Stochastic Differential Equations and Diffusion Processes, Second Edition, North Holland Publishing, Amsterdam.
123. Ives, A., 1995, Measuring resilience in stochastic systems, Ecological Monographs, 65:217-233.
124. Jablonka, E., 2004, Epigenetic epidemiology, International Journal of Epidemiology, 33:929-935.
125. Jablonka, E., M. Lamb, 1995, Epigenetic Inheritance and Evolution: The Lamarckian Dimension, Oxford University Press, Oxford.
126. Jablonka, E., M. Lamb, 1998, Epigenetic inheritance in evolution, Journal of Evolutionary Biology, 11:159-183.
127. Jacobson J., S. Jacobson, 2002, Breast-feeding and gender as moderators of teratogenic effects on cognitive development, Neurotoxicological Teratology, 24:349-358.
128. Jaenisch, R., A. Bird, 2003, Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals, Nature Genetics Supplement, 33:245-254.
129. James, L., D. Tawfik, 2003, Conformational diversity and protein evolution - a 60-year old hypothesis revisited, TRENDS in Biochemical Sciences, 28:361-368.
130. Jeffery, C., 2005, Mass spectrometry and the search for moonlighting proteins, Mass Spectrometry Reviews, 24:772-782.
131. Jenkins, J., A. Kleinman, B. Good, 1990, Cross-cultural studies of depression. In Becker, J., A. Kleinman, (eds.), Advances in mood disorders: Theory and Research, L. Erlbaum, Los Angeles, pp. 67-99.
132. Johnson-Laird, P., F. Mancini, A. Gangemi, 2006, A hyper-emotion theory of psychological illnesses, Psychological Reviews, 113:822-841.
133. Kahraman, A., 2009, The geometry and physicochemistry of protein binding sites and ligands and their detection in electron density maps, PhD dissertation, Cambridge University.
134. Karlin, S., H. Taylor, 1975, A First Course in Stochastic Pricesses, Second Edition, Academic Press, New York.
135. Karp, R., C. Chen, A. Meyers, 2005, The appearance of discretionary income: influence on the prevalence of under- and over-nutrition, International Journal of Equity in Health, 4:10.
136. Kastner, M., 2006, Phase transitions and configuration space, arXiv/condmat/0703401.
137. Kawaguchi, M., H. Mino, D. Durand, 2011, Stochastic resonance can enhance information transmission in neural networks, IEEE Transactions on Biomedical Engineering, 58:(7), doi 10.1109/TBME.2011.2126571.
138. Khinchin, A., 1957, The Mathematical Foundations of Information Theory, Dover, New York.
139. Kim, H., D. Sherman, S. Taylor, J. Sasaki, C. Ryu, J. Xu, 2010, Culture, serotonin receptor polymorphism (5-HTR1A) and locus of attention, Social, Cognitive, and Affective Neurosciences, 5:212-218.
140. Kim, J., R. Stewart, S. Kim, 2007, Interactions between life stressors and susceptibility genes (5-HTTLPR and BDNF) on depression in Korean elders, Biological Psychiatry, 62:423-428.
141. Kim, W., M. Hecht, 2006, Generic hydrophobic residues are sufficient to promote aggregation of the Alzheimer’s Aβ42 peptide, Proceedings of the National Academy of Sciences, 103:15824-15829.
142. Kitano, H., 2004, Biological robustness, Nature Reviews Genetics, 5:826-837.
143. Kivipelto, M., 2001, Midlife vascular risk factors for Alzheimer’s disease in later life: longitudinal, population based study, British Medical Journal, 322:1447-1451.
144. Kleinman, A., B. Good, 1985, Culture and Depression: Studies in the Anthropology of Cross-Cultural Psychiatry of Affect and Depression, University of California Press, Berkeley.
145. Kleinman, A., V. Das, M. Lock, 1994, Social Suffering, University of California Press, Berkeley.
146. Kleinman, A., A. Cohen, 1997, Psychiatry’s global challenge, Scientific American, 276(3):86-89.
147. Koonin, E., T. Senkevich, V. Dolja, 2006, The ancient virus world and evolution of cells, Biology Direct, 1:29.
148. 12-dependent methyltransferase complex, Nature, 484:265-269.
149. Kuo, W., Y. Chiang, T. Hwang, A. Wu, 2007, Performance-driven crosstalk elimination at postcompiler level - the case of low-crosstalk op-code assignment, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 26:564-573.
150. Landau, L., E. Lifshitz, 2007, Statistical Physics, Part I, Elsevier, New York.
151. Landsteiner, K., 1936, The Specificity of Serological Reactions, reprinted 1962, Dover Publications, New York.
152. Langer, N., 1999, Culturally competent professionals in therapeutic alliances enhance patient compliance, Journal of Health Care for the Poor and Unverserviced, 10:19-26.
153. Lazarou, J., B. Pomeranz, P. Correy, 1998, Incidence of adverse drug reactions in hospitalized patients - a meta-analysis of prospective studies, Journal of the American Medical Association, 279:1200-1205.
154. Lei, J., K. Huang, 2010, Protein folding: a perspective from statistical physics, arXiv:1002.5013v1.
155. Levin, S., 1989, Ecology in theory and application. In Levin, S., T. Hallam, L. Gross (eds.), Applied Mathematical Ecology, Biomathematics Texts 18, Springer, New York.
156. Levinthal, C., 1968, Are there pathways for protein folding? Journal de Chimie Physique et de Physicochimie Biologique, 65:44-45.
157. Levinthal, C., 1969. In Debrunner, P., J. Tsbris, E. Munck (eds.) Mossbauer Spectroscopy in Biological Systems, University of Illinois Press, Urbana, pp. 22-24.
158. Levitt, M., C. Chothia, 1976, Structural patterns in globular proteins, Nature, 261:552-557.
159. Lewontin R., 2000, The Triple Helix: Gene, Organism, and Environment, Harvard University Press, Cambridge, MA.
160. Lewontin, R., 2010, Not so natural selection, New York Review of Books Online, May 27. http://www.nybooks.com/articles/archives/2010/may/ 27/not-sonatural-selection/?pagination=false
161. Littman, B., R. Krishna, 2011, Translational Medicine and Drug Discovery, Cambridge University Press, Cambridge.
162. Longuet-Higgins, H., 1963, The symmetry groups of non-rigid molecules, Molecular Physics, 6:445-460.
163. Luchinsky, D., 1997, On the nature of large fluctuations in equilibrium systems: observations of an optimal force, Journal of Physics A, 30:L577-L583.
164. Manolio, T., F. Collins, N. Cox, 2009, Finding the missing heritability of complex diseases, Nature, 461:747-753.
165. Manson, S., 1995, Culture and major depression: current challenges in the diagnosis of mood disorders, Psychiatric Clinics of North America, 18:487-501.
166. Marincola, F., 2011, The trouble with translational medicine, Journal of Internal Medicine, 270:123-127.
167. Markus H., S. Kitayama, 1991, Culture and the self: implications for cognition, emotion, and motivation, Psychological Review, 98:224-253.
168. Marsella, A., 2003, Cultural aspects of depressive experience and disorders. In Lonner, W., D. Dinnel, S, Hays, and D. Sattler (eds.), Online Readings in Psychology and Culture (Unit 9, Chapter 4) (http://www.wwu.edu/ culture), Center for Cross-Cultural Research, Western Washington University, Bellingham.
169. Masuda T., R. Nisbett, 2006, Culture and change blindness, Cognitive Science: A Multidisciplinary Journal, 30:381-399.
170. Matsumoto, Y., 2002, An Introduction to Morse Theory, American Mathematical Society, Providence.
171. Maturana, H., F. Varela, 1980, Autopoiesis and Cognition, Reidel Publishing Company, Dordrecht.
172. Maturana, H., F. Varela, 1992, The Tree of Knowledge, Shambhala Publications, Boston.
173. McCauley, J., 1993, Chaos, Dynamics and Fractals: An Algorithmic Approach to Deterministic Chaos, Cambridge University Press, New York.
174. Memmi, A., 1967, The Colonizer and the Colonized, Beacon Press, Boston.
175. Memmi, A., 1969, Dominated Man, Beacon Press, Boston.
176. Meyer, P., 1989, A short presentation on stochastic calculus. In Emery, M., Stochastic Calculus on Manifolds, Springer, New York.
177. Mian, I., C. Rose, 2011, Communication theory and multicellular biology, Integrative Biology, 3:350-367.
178. Miranda, M., D. Kim, M. Overstreet Galeano, C. Paul, A. Hull, S. Morgan. 2007. The relationship between early childhood blood lead levels and performance on end-of-grade tests, Environmental Health Perspectives, 115:1242-1247.
179. Miura, T., R. Kojima, M. Mizutani, Y. Shiga, F. Takatsu, Y. Suzuki, 2001, Effect of digioxin noncompliance on hospitalization and mortality in patients with heart failure in long-term therapy: a prospective cohort study, European Journal of Clinical Pharmacology, 57:77-83.
180. Modiano D., V. Petrarca, B. Sirma, I. Nebie, D. Diallo, F. Esposito M. Coluzzi, 1996, Different response to Plasmodium falciparum malaria in West African sympatric ethnic groups, Proceedings of the National Academy of Sciences, 93:13206-13211.
181. Modiano D., G. Luoni, B. Sirima, A. Lanfrancotti, V. Petrarca, F. Cruciani, J. Simpore, B. Ciminelli, E. Foglietta, P. Grisanti, I. Bianco, G. Modiano M. Coluzzi, 2001a, The lower susceptibility to Plasmodium falciparum malaria of Fulani of Burkina Faso (West Africa) is associated with low frequencies of classic malaria-resistance genes, Transactions of the Royal Society of Tropical Hygiene and Medicine, 95:149-152.
182. Modiano D., G. Luoni, V. Petrarca, B. Sodiomon Sirima, M. De Luca, J. Simpore, M. Coluzzi, J. Bodmer, G. Modiano, 2001b, HLA class I in three West African ethnic groups: genetic distances from sub-Saharan and Caucasoid populations, Tissue Antigen, 57:128-137.
183. Modiano D., V. Petrarca, B. Sirima, I. Nebie, G. Luoni, F. Esposito M. Coluzzi, 1998, Baseline immunity of the population and impact of insecticide-treated curtains on malaria infection, American Journal of Tropical and Medical Hygiene, 59:336-340.
184. Needleman, H., J. Riess, M. Tobin, G. Biesecker, J. Greenhouse, 1996, Bone lead levels and delinquent behavior, Journal of the American Medical Association, 275:363-369.
185. Nesse, R., 2000, Is depression an adaptation?, Archives of General Psychiatry, 57:14-20.
186. Nisbett R., K. Peng, C. Incheol, A. Norenzayan, 2001, Culture and systems of thought: holistic vs. analytic cognition, Psychological Review, 108:291-310.
187. Nocedal, J., S. Wright, 1999, Numerical Optimization, Springer, New York.
188. Norenzayan, A., S. Heine, 2005, Psychological universals: what are they and how can we know? Psychological Bulletin, 131:763-784.
189. Nunney, L., 1999, Lineage selection and the evolution of multistage carcinogenesis, Proceedings of the Royal Society B, 266:493-498.
190. Odling-Smee, F., K. Laland, M. Feldman, 2003, Niche Construction: The Neglected Process in Evolution, Princeton University Press, Princeton.
191. Ofria, C., C. Adami, T. Collier, 2003, Selective pressures on genomes in molecular evolution, Journal of Theoretical Biology, 222:477-483.
192. Onsager, L., S. Machlup, 1953, Fluctuations and irreversible processes, Physical Review, 91:1505-1512.
193. O’Nuallain, S., 2008, Code and context in gene expression, cognition, and consciousness. In Barbiere, M., (ed.), The Codes of Life: The Rules of Macroevolution, Springer, New York, pp. 347-356.
194. Onuchic, J., P. Wolynes, 2004, Theory of protein folding, Current Opinion in Structural Biology, 14:70-75.
195. Orr, G., R. Rando, F. Wen Bangerter, 1979, Synthetic glycolipids and the lectin-mediated aggregation of liposomes, Journal of Biological Chemistry, 254:4721-4725.
196. Oyelaran, O., Q. Li, D. Farnsworth, J. Gildersleeve, 2009, Microarrays with varying carbohydrate density reveal distinct subpopulations of serum antibodies, Journal of Proteome Research, 8:3529-3538.
197. Park, J., P. Neelakanta, 1996, Information-theoretic aspects of neural stochastic resonance, Complex Systems, 10:55-71.
198. Patterson, P., 2010, The trouble with multi-core, IEEE Spectrum, July: 28-53.
199. Paul, C., 1992, Introduction to Electromagnetic Compatibility, John Wiley and Sons, New York.
200. Paul, S., D. Mytelka, C. Dunwiddie, C. Persinger, B. Munos, S. Lindborg, A. Schact, 2010, How to improve R & D productivity: the pharmaceutical industry’s grand challenge, Nature Reviews: Drug Discovery, 9:201-214.
201. Pauling, L., 1940, A theory of the structure and process of formation of antibodies, Journal of the American Chemical Society, 62:2643-2657.
202. Petersen, K., Ergodic Theory, Cambridge Studies in Advanced Mathematics 2, Cambridge University Press, New York.
203. Pettini, M., 2007, Geometry and Topology in Hamiltonian Dynamics and Statistical Mechanics, Springer, New York.
204. Pielou, E., 1977, Mathematical Ecology, Wiley, New York.
205. Pirmohamed, M., D. Naisbitt, F. Gordon, B. Park, 2002, The danger hypothesis - a potential role in idiosyncratic drug reaction, Toxicology, 181-182:55-63.
206. Plaxco, K., K. Simons, D. Baker, 1998, Contact order, transition state placement and the refolding rates of single domain proteins, Journal of Molecular Biology, 277:985-994.
207. Protter, P., 1990, Stochastic Integration and Differential Equations: A New Approach, Springer, New York.
208. Pufall, M., G. Lee, M. Nelson, H. Kang, A Velyvis, L. Kay, L. McIntosh, B. Graves, 2005, Variable control of Ets-1 DNA binding, Science, 309:142-145.
209. Qiu, C., M. Kivipelto, E. von Strauss, 2009, Epidemiology of Alzheimer’s disease: occurrence, determinants, and strategies toward intervention, Dialogues in Clinical Neuroscience, 11:111-128.
210. Rau, H., T. Elbert, 2001, Psychophysiology of arterial baroreceptors and the etiology of hypertension, Biological Psychology, 57:179-201.
211. Richerson, P., R. Boyd, 2006, Not by genes alone: How Culture Transformed Human Evolution, University of Chicago Press, Chicago.
212. Ridley, M., 1996, Evolution, Second Edition, Blackwell Science, Oxford University Press, Oxford.
213. Ringle, G., J. Young, 1968, Solutions of the Heawood map-coloring problem, Proceedings of the National Academy of Sciences, 60:438-445.
214. Risch, N., R. Herrell, T. Lehner, K. Liang, L. Eaves, J. Hoh, A. Griem, M. Kovacs, J. Ott, K.R. Merikangas, 2009, Interaction between the serotonin transporter gene (5-HTTLPR), stressful life events, and risk of depression, Journal of the American Medical Association, 301:2462-2472.
215. Rockafellar, R., 1970, Convex Analysis, Princeton University Press, Princeton.
216. Rodin S., A. Rodin, 2008, On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases, Heredity, 100:341-355.
217. Royden, H., 1968, Real Analysis, Macmillan, New York.
218. Rudin, W., 1976, Principles of Mathematical Analysis, McGraw-Hill, New York.
219. Sackett, D., R. Haynes (eds.), 1976, Compliance with Therapeutic Regimens, Johns Hopkins University Press, Baltimore.
220. Sarlio-Lahteenkorva, S., E. Lahelma, 2001, Food insecurity is associated with past and present economic disadvantage and body mass index, Journal of Nutrition, 131:2880-2884.
221. Scherrer, K., J. Jost, 2007a, The gene and the genon concept: a functional and information-theoretic analysis, Molecular Systems Biology, 3:87-93.
222. Scherrer, K., J. Jost, 2007b, Gene and genon concept: coding versus regulation, Theory in Bioscience, 126:65-113.
223. Scheuner, D., R. Kaufman, 2008, The unfolded protein response: a pathway that links insulin demand with β-cell failure and diabetes, Endocrine Reviews, 29:317-333.
224. Shankardass, K., McConnell, R., Jerrett, M., Milam, J., Richardson, J., Berhane, K., 2009, Parental stress increases the effect of traffic-related air pollution on childhood asthma incidence, Proceedings of the National Academy of Sciences, 106:12406-12411.
225. Shannon, C., 1959, Coding theorems for a discrete source with a fidelity criterion, Institute of Radio Engineers International Convention Record Vol. 7, 142-163.
226. Shirkov, D., V. Kovalev, 2001, The Bogoliubov renormalization group and solution symmetry in mathematical physics, Physics Reports, 352:219-249.
227. Siliani, G., U. Frith, J. Demonet, F. Fazio, D. Perani, C. Price, C. Frith, E. Paulesu, 2005, Brain abnormalities underlying altered activation in dyslexia: a vowel based morphometry study, Brain, 128(Pt.10):2453-2461.
228. Sims-Robinson, S., B. Kim, A. Rosko, E. Feldman, 2010, How does diabetes accelerate Alzherimer’s disease pathology? Nature Reviews Neurology, 6:551-559.
229. Singh-Manoux A., N. Adler, M. Marmot, 2003, Subjective social status: its determinants and its association with measures of ill-health in the Whitehall II study, Social Science and Medicine, 56:1321-1333.
230. Spenser, J., 2010, The giant component: the golden anniversary, Notices of the AMS, 57:720-724.
231. Stern, Y., 2009, Cognitive reserve, Neuropsychologica, 47:2010-2028.
232. Strauss, R., H. Pollack, 2001, Epidemic increase in chilhood overweight, 1986-1998, Journal of the American Medical Association, 286:2845-2848.
233. Sun, F., G. Ceataeno-Anolles, 2008, Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code, PLOSone, 3:32799.
234. Taylor, J., 1996, Introduction to Measure and Probability, Springer, New York.
235. Thayer, J., R. Lane, 2000, A model of neurovisceral integration in emotion regulation and dysregulation, Journal of Affective Disorders, 61:201-216.
236. Thomas K., 2012, J & J fined $1.2 billion in drug case, NY Times, April 12, B1-2.
237. Tlusty, T., 2007, A model for the emergence of the genetic code as a transition in a noisy information channel, Journal of Theoretical Biology, 249:331-342.
238. Tlusty, T., 2008, A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost, Physical Biology, 5:016001.
239. Tlusty, T., 2008, Casting polymer nets to optimize noisy molecular codes, Proceedings of the National Academy of Sciences, 105:8238-8243.
240. Tlusty, T., 2010, Personal communication.
241. Tompa, P., P. Csermely, 2004, The role of structural disorder in the function of RNA and protein chaperones, FASEB Journal, 18:1169-1175.
242. Tompa, P., M. Fuxreiter, 2008, Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions, Trends in Biochemical Science, 33:1-8.
243. Tompa, P., C. Szasz, L. Buday, 2005, Structural disorder throws new light on moonlighting, Trends in Biochemical Sciences, 30:484-489.
244. Turner, B., 2000, Histone acetylation and an epigenetic code, Bioessays, 22:836-845.
245. Ullmann, J., 1988, The Anatomy of Industrial Decline, Greenwood-Quorum Books, Westport.
246. Uversky, V., 2002, Natively unfolded proteins: a point where biology waits for physics, Protein Science, 11:739-756.
247. Vetsigian, K., C. Wose, N. Goldenfield, 2006, Collective evolution and the genetic code, Proceedings of the National Academy of Sciences, 103:10696-10701.
248. Villalobos, M., A. Mizuno, B. Dahl, N. Kemmotsu, R. Muller, 2005, Reduced functional connectivity between VI and Inferior frontal cortex associated with visimoto performance in autism, Neuroimage, 25:916-925.
249. Volkman, B. 2001, Two-state allosteric behavior in a single-domain signaling protein, Science, 291:2429-2433.
250. Wallace, D., 2001, Discriminatory public policies and the New York City tuberculosis epidemic, Microbes and Infection, 3:515-524.
251. Wallace, D., R. Wallace, 1998, A Plague on Your Houses, Verso, New York.
252. Wallace, D., R. Wallace, 1998, Scales of geography, time, and population: the study of violence as a public health problem, American Journal of Public Health, 88:1853-1858.
253. Wallace, D., R. Wallace, 2000, Life and death in Upper Manhattan and the Bronx: toward evolutionary perspectives on catastrophic social change, Environment and Planning A, 32:1245-1266.
254. Wallace, D., R. Wallace, V. Rauh, 2003, Community stress, demoralization, and body mass index: evidence for social signal transduction, Social Science and Medicine, 56:2467-2478.
255. Wallace, R., 2000, Language and coherent neural amplification in hierarchical systems: renormalization and the dual information source of a generalized spatiotemporal stochastic resonance, International Journal of Bifurcation and Chaos, 10:493-502.
256. Wallace, R., 2004, Comorbidity and anticomorbidity; autocognitive developmental disorders of psychosocial stress, Acta Biotheoretica, 52:71-93.
257. Wallace, R., 2005, Consciousness: A Mathematical Treatment of the Global Neuronal Workspace Model, Springer, New York.
258. Wallace, R., 2007, Culture and inattentional blindness: a global workspace perspective, Journal of Theoretical Biology, 245:378-390.
259. Wallace, R., 2008, Toward formal models of biologically inspired, highly parallel machine cognition, International Journal of Parallel, Emergent, and Distributed Systems, 23:367-408.
260. Wallace, R., 2009a, Metabolic constraints on the eukaryotic transition, Origins of Life and Evolution of Biospheres, 39:165-176.
261. Wallace, R., 2009b, Programming coevolutionary machines: the emerging conundrum, International Journal of Parallel, Emergent, and Distributed Systems, 24:443-453.
262. Wallace, R., 2010a, Protein folding disorders: toward a basic biological paradigm, Journal of Theoretical Biology, 267:582-594.
263. Wallace, R., 2010b, Tunable epigenetic catalysis: programming real-time cognitive machines, International Journal of Parallel, Emergent, and Distributed Systems, 25:209-222.
264. Wallace, R., 2011a, Structure and dynamics of the ‘protein folding code’ inferred using Tlusty’s topological rate distortion approach, BioSystems, 103:18-26.
265. Wallace, R., 2011b, Multifunction moonlighting and intrinsically disordered proteins: information catalysis, non-rigid molecule symmetries and the ‘logic gate’ spectrum, Comptes Rendus Chimie, 14:1117-1121.
266. Wallace, R., 2011c, On the evolution of homochirality, Comptes Rendus Biologies, 334:263-268.
267. Wallace, R., 2012a, Extending Tlusty’s rate distortion index theorem method to the glycome: do even ‘low level’ biochemical phenomena require sophisticated cognitive paradigms?, BioSystems, 107:145-152.
268. Wallace, R., 2012b, Spontaneous symmetry breaking in a non-rigid molecule approach to intrinsically disordered proteins, Molecular BioSystems, 8:374-377.
269. Wallace, R., 2012c, Consciousness, crosstalk, and the mereological fallacy: an evolutionary perspective, Physics of Life Reviews, doi 10.1016/j.plrev.2012.08.002.
270. Wallace, R., D. Wallace, J. Ullmann, H. Andrews, 1999, Deindustrialization, inner-city decay and the diffusion of AIDS in the USA, Environment and Planning A, 31:113-139.
271. Wallace, R., D. Wallace, 2005, Structured psychosocial stress and the US obesity epidemic, Journal of Biological Systems, 13:363-384.
272. Wallace, R., R.G. Wallace, D. Wallace, 2003, Toward cultural oncology: the evolutionary information dynamics of cancer, Open Systems and Information Dynamics, 10:159-181.
273. Wallace, R., M. Fullilove, 2008, Collective Consciousness and its Discontents, Springer, New York.
274. Wallace, R., D. Wallace, 1997, Community marginalization and the diffusion of disease and disorder in the United States, British Medical Journal, 314:1341-1345.
275. Wallace, R., D. Wallace, 2008, Punctuated equilibrium in statistical models of generalized coevolutionary resilience: how sudden ecosystem transitions can entrain both phenotype expression and Darwinian selection, Transactions on Computational Systems Biology IX, LNBI 5121:23-85.
276. Wallace, R., D. Wallace, 2009, Code, context, and epigenetic catalysis in gene expression, Transactions on Computational Systems Biology XI, LNBI 5750, 283-334.
277. Wallace, R., D. Wallace, 2010, Gene Expression and its Discontents: The Social Production of Chronic Disease, Springer, New York.
278. Wallace, R., D. Wallace, 2011, Cultural epigenetics: on the heritability of complex diseases, Transactions on Computational Systems Biology XIII, LNBI 6575:131-170.
279. Wallace, R., R. G. Wallace, 2008, On the spectrum of prebiotic chemical systems: an information-theoretic treatment of Eigen’s Paradox, Origins of Life and Evolution of Bioshperes, 38:419-455.
280. Wallace, R.G., R. Wallace, 2009, Evolutionary radiation and the spectrum of consciousness, Consciousness and Cognition, 18:160-167.
281. Wallach, J., and M. Rey, 2009, A socioeconomic analysis of obesity and diabetes in New York City, Public Health Research, Practice, and Policy, Centers for Disease Control and Prevention, http://www.cdc.gov/pcd/issues/2009/jul/0L0215.htm.
282. Ward, L., 2009, Physics of neural synchronation mediated by stochastic resonance, Contemporary Physics, 50:563-574.
283. Weinstein, A., 1996, Groupoids: unifying internal and external symmetry, Notices of the American Mathematical Association, 43:744-752.
284. Wehling, M., 2011, Drug development in the light of translational science: shine or shade? Drug Discovery Today, 16:1076-1083.
285. West-Eberhard, M., 2003, Developmental Placisticity and Evolution, Oxford University Press, New York.
286. West-Eberhard, M., 2005, Developmental plasticity and the origin of species differences, Proceedings of the National Academy of Sciences, 102:6543-6549.
287. Wilkinson, R., 1996, Unhealthy Societies: The Afflictions of Inequality, Routledge, New York.
288. Wilson, K., 1971, Renormalization group and critical phenomena. I Renormalization group and the Kadanoff scaling picture, Physical Review B, 4:3174-3183.
289. Witzany, G., 2009, Noncoding RNAs: persistent viral agents as modular tools for cellular needs, Annals of the New York Academy of Sciences, 1178:244-267.
290. Wolpert, D., W. MacReady, 1995, No free lunch theorems for search, Santa Fe Institute, SFI-TR-02-010.
291. Wolpert, D., W. MacReady, 1997, No free lunch theorems for optimization, IEEE Transactions on Evolutionary Computation, 1:67-82.
292. Wolynes, P., 1996, Symmetry and the energy landscapes of biomolecules, Proceedings of the National Academcy of Sciences, 93:14249-14255.
293. Wymer, C., 1997, Structural nonlinear continuous-time models in econometrics, Macroeconomic Dynamics, 1:518-548.
294. Zhang, Q., Y. Wang, E. Huang, 2009, Changes in racial/ethnic disparities in the prevalence of type 2 diabetes by obesity level among US adults, Ethnicity and Health, 14:439-457.
295. Zhu, R., A. Rebirio, D. Salahub, S. Kaufmann, 2007, Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models, Journal of Theoretical Biology, 246:725-745.