-
1
-
-
0029155772
-
Impact of local and non-local interactions on the thermodynamics and kinetics of protein folding
-
Abkevich V.I., Gutin A.M., Shakhnovich E.I. Impact of local and non-local interactions on the thermodynamics and kinetics of protein folding. J. Mol. Biol. 252:1995;460-471
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 460-471
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
2
-
-
0026782853
-
Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G
-
Alexander P., Orban J., Bryan P. Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G. Biochemistry. 31:1992;7243-7248
-
(1992)
Biochemistry
, vol.31
, pp. 7243-7248
-
-
Alexander, P.1
Orban, J.2
Bryan, P.3
-
3
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen C.B. Principles that govern the folding of protein chains. Science. 181:1973;223-230
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
4
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F., Koetzle T., Williams G., Meyer E., Brice M., Rodgers J., Kennard O., Shimanouchi T., Tasumi M. The Protein Data Bank a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.1
Koetzle, T.2
Williams, G.3
Meyer, E.4
Brice, M.5
Rodgers, J.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
5
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson J.D., Onuchic J.N., Socci N.D., Wolynes P.G. Funnels, pathways, and the energy landscape of protein folding a synthesis. Proteins: Struct. Funct. Genet. 21:1995;167-195
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
6
-
-
0030601788
-
Microsecond protein folding through a compact transition state
-
Burton R.E., Huang G.S., Daugherty M.A., Fullbright P.W., Oas T.G. Microsecond protein folding through a compact transition state. J. Mol. Biol. 263:1996;311-322
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 311-322
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Fullbright, P.W.4
Oas, T.G.5
-
7
-
-
0024977347
-
Low temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations
-
Chen B.L., Baase W.A., Schellman J.A. Low temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations. Biochemistry. 28:1989;691-699
-
(1989)
Biochemistry
, vol.28
, pp. 691-699
-
-
Chen, B.L.1
Baase, W.A.2
Schellman, J.A.3
-
8
-
-
0031214818
-
Folding and stability of a fibronectin type III domain of human tenascin
-
Clarke J., Hamill S.J., Johnson C.M. Folding and stability of a fibronectin type III domain of human tenascin. J. Mol. Biol. 270:1997;771-778
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 771-778
-
-
Clarke, J.1
Hamill, S.J.2
Johnson, C.M.3
-
9
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill K.A., Chan H.S. From Levinthal to pathways to funnels. Nature Struc. Biol. 4:1997;10-19
-
(1997)
Nature Struc. Biol.
, vol.4
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
12
-
-
0029653905
-
Mapping the structures of transition states and intermediates in folding: Delineation of pathways at high resolution
-
Fersht A.R. Mapping the structures of transition states and intermediates in folding delineation of pathways at high resolution. Phil. Trans. Roy. Soc. London. 348:1995;11-15
-
(1995)
Phil. Trans. Roy. Soc. London
, vol.348
, pp. 11-15
-
-
Fersht, A.R.1
-
13
-
-
0028856785
-
Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications
-
Fersht A.R. Optimization of rates of protein folding the nucleation-condensation mechanism and its implications. Proc. Natl Acad. Sci. U.S.A. 92:1995;10869-10873
-
(1995)
Proc. Natl Acad. Sci. U.S.A
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
15
-
-
0030623529
-
Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold
-
Finkelstein A.V., Badretdinov A.Y. Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold. Folding Design. 2:1997;115-121
-
(1997)
Folding Design
, vol.2
, pp. 115-121
-
-
Finkelstein, A.V.1
Badretdinov, A.Y.2
-
16
-
-
0020972782
-
Theoretical studies of protein folding
-
Go N. Theoretical studies of protein folding. Annu. Rev. Biophys. Bioeng. 12:1983;183-210
-
(1983)
Annu. Rev. Biophys. Bioeng.
, vol.12
, pp. 183-210
-
-
Go, N.1
-
18
-
-
0031444104
-
Folding dynamics of the src SH3 domain
-
Grantcharova V.P., Baker D. Folding dynamics of the src SH3 domain. Biochemistry. 36:1997;15685-15692
-
(1997)
Biochemistry
, vol.36
, pp. 15685-15692
-
-
Grantcharova, V.P.1
Baker, D.2
-
19
-
-
0030605814
-
Linguistic analysis of protein folding
-
Gross M. Linguistic analysis of protein folding. FEBS Letters. 390:1996;249-252
-
(1996)
FEBS Letters
, vol.390
, pp. 249-252
-
-
Gross, M.1
-
20
-
-
0032570543
-
Folding kinetics of the SH Domain of PI3 K by real-time NMR combined with optical spectroscopy
-
In the press
-
Guijarro J.I., Morton C.J., Plaxco K.W., Campbell I.D., Dobson C.M. Folding kinetics of the SH Domain of PI3 K by real-time NMR combined with optical spectroscopy. J. Mol. Biol. 1998;. In the press
-
(1998)
J. Mol. Biol.
-
-
Guijarro, J.I.1
Morton, C.J.2
Plaxco, K.W.3
Campbell, I.D.4
Dobson, C.M.5
-
22
-
-
0029151158
-
Submillisecond folding of monomeric λ-repressor
-
Huang G.S., Oas T.G. Submillisecond folding of monomeric λ-repressor. Proc. Natl Acad. Sci. U.S.A. 92:1995;6878-6882
-
(1995)
Proc. Natl Acad. Sci. U.S.A
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
23
-
-
0028935887
-
Structure and stability of monomeric λ-repressor: NMR evidence for two-state folding
-
Huang G.S., Oas T.G. Structure and stability of monomeric λ-repressor NMR evidence for two-state folding. Biochemistry. 34:1995;3884-3892
-
(1995)
Biochemistry
, vol.34
, pp. 3884-3892
-
-
Huang, G.S.1
Oas, T.G.2
-
24
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2.1. Evidence for a two-state transition
-
Jackson S.E., Fersht A.R. Folding of chymotrypsin inhibitor 2.1. Evidence for a two-state transition. Biochemistry. 30:1991;10428-10435
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
26
-
-
0020997912
-
Dictionary of secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of secondary structure pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:1983;2577-2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
27
-
-
0028327236
-
Protein folding dynamics: The diffusion-collision model and experimental data
-
Karplus M., Weaver D.L. Protein folding dynamics the diffusion-collision model and experimental data. Protein Sci. 3:1994;650-668
-
(1994)
Protein Sci.
, vol.3
, pp. 650-668
-
-
Karplus, M.1
Weaver, D.L.2
-
28
-
-
0027305989
-
Folding and stability of a tryptophan-containing mutant of ubiquitin
-
Khorasanizadeh S., Peters I.D., Butt T.R., Roder H. Folding and stability of a tryptophan-containing mutant of ubiquitin. Biochemistry. 32:1993;7054-7063
-
(1993)
Biochemistry
, vol.32
, pp. 7054-7063
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Butt, T.R.3
Roder, H.4
-
30
-
-
0029003514
-
Folding of a four-helix bundle: Studies of acyl-coenzyme a binding protein
-
Kragelund B.B., Robinson C.V., Knudsen J., Dobson C.M., Poulsen F.M. Folding of a four-helix bundle studies of acyl-coenzyme A binding protein. Biochemistry. 34:1995;7217-7224
-
(1995)
Biochemistry
, vol.34
, pp. 7217-7224
-
-
Kragelund, B.B.1
Robinson, C.V.2
Knudsen, J.3
Dobson, C.M.4
Poulsen, F.M.5
-
31
-
-
0029965111
-
Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family
-
Kragelund B.B., Hojrup P., Jensen M.S., Schjerling C.K., Juul E., Knudsen J., Poulsen F.M. Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family. J. Mol. Biol. 256:1996;187-200
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 187-200
-
-
Kragelund, B.B.1
Hojrup, P.2
Jensen, M.S.3
Schjerling, C.K.4
Juul, E.5
Knudsen, J.6
Poulsen, F.M.7
-
32
-
-
0030154861
-
Cytochrome c folding triggered by electron transfer
-
Mines G.A., Pascher T., Lee S.C., Winkler J.R., Gray H.B. Cytochrome c folding triggered by electron transfer. Chem. Biol. 3:1996;491-497
-
(1996)
Chem. Biol.
, vol.3
, pp. 491-497
-
-
Mines, G.A.1
Pascher, T.2
Lee, S.C.3
Winkler, J.R.4
Gray, H.B.5
-
33
-
-
0002682169
-
Local versus non-local interactions in protein folding and stability-an experimentalist's point of view
-
Munoz V., Serrano L. Local versus non-local interactions in protein folding and stability-an experimentalist's point of view. Folding Design. 1:1996;R71-R77
-
(1996)
Folding Design
, vol.1
-
-
Munoz, V.1
Serrano, L.2
-
34
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers J.K., Pace C.N., Scholtz J.M. Denaturant m values and heat capacity changes relation to changes in accessible surface areas of protein unfolding. Protein Sci. 4:1995;2138-2148
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
35
-
-
0029670343
-
Formation of electrostatic interactions on the protein folding pathway
-
Oliveberg M., Fersht A.R. Formation of electrostatic interactions on the protein folding pathway. Biochemistry,. 35:1996;2726-2737
-
(1996)
Biochemistry
, vol.35
, pp. 2726-2737
-
-
Oliveberg, M.1
Fersht, A.R.2
-
37
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo C.A., Jones D.T., Thornton J.M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
38
-
-
0030628053
-
On the theory of folding kinetics for short proteins
-
Pande V.S., Grosberg A.Y., Tanaka T. On the theory of folding kinetics for short proteins. Folding Design. 2:1997;109-114
-
(1997)
Folding Design
, vol.2
, pp. 109-114
-
-
Pande, V.S.1
Grosberg, A.Y.2
Tanaka, T.3
-
39
-
-
0031214363
-
Comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules
-
Plaxco K.W., Spitzfaden C., Campbell I.D., Dobson C.M. Comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules. J. Mol. Biol. 270:1997;763-770
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 763-770
-
-
Plaxco, K.W.1
Spitzfaden, C.2
Campbell, I.D.3
Dobson, C.M.4
-
40
-
-
0032562182
-
The folding kinetics and thermodynamics of the Fyn-SH3 Domain
-
In the press
-
Plaxco K.W., Guijarro J.I., Morton C.J., Pitkeathly M., Campbell I.D., Dobson C.M. The folding kinetics and thermodynamics of the Fyn-SH3 Domain. Biochemistry. 1998;. In the press
-
(1998)
Biochemistry
-
-
Plaxco, K.W.1
Guijarro, J.I.2
Morton, C.J.3
Pitkeathly, M.4
Campbell, I.D.5
Dobson, C.M.6
-
41
-
-
0031055942
-
Kinetic role of early intermediates in protein folding
-
Roder H., Colón W. Kinetic role of early intermediates in protein folding. Curr. Opin. Struc. Biol. 7:1997;15-28
-
(1997)
Curr. Opin. Struc. Biol.
, vol.7
, pp. 15-28
-
-
Roder, H.1
Colón, W.2
-
43
-
-
0030984109
-
Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability
-
Scalley M.L., Baker D. Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability. Proc. Natl Acad. Sci. USA. 94:1997;10636-10640
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10636-10640
-
-
Scalley, M.L.1
Baker, D.2
-
44
-
-
0030900533
-
Kinetics of folding of the IgG binding domain of peptostreptoccocal protein L
-
Scalley M.L., Yi Q., Gu H., McCormack A., Yates J.R., Baker D. Kinetics of folding of the IgG binding domain of peptostreptoccocal protein L. Biochemistry. 36:1998;3373-3382
-
(1998)
Biochemistry
, vol.36
, pp. 3373-3382
-
-
Scalley, M.L.1
Yi, Q.2
Gu, H.3
McCormack, A.4
Yates, J.R.5
Baker, D.6
-
45
-
-
0030450051
-
Thermodynamic properties of an extremely rapid protein folding reaction
-
Schindler T., Schmid F.X. Thermodynamic properties of an extremely rapid protein folding reaction. Biochemistry. 35:1996;16833-16842
-
(1996)
Biochemistry
, vol.35
, pp. 16833-16842
-
-
Schindler, T.1
Schmid, F.X.2
-
47
-
-
0000710672
-
Diffusive dynamics of the reaction coordinate for protein folding funnels
-
Socci N.D., Onuchic J.N., Wolynes P.G. Diffusive dynamics of the reaction coordinate for protein folding funnels. J. Chem. Phys. 104:1996;5860-5868
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 5860-5868
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
48
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick T.R., Mayne L., Englander S.W. Molecular collapse the rate-limiting step in two-state cytochrome c folding. Proteins: Struct. Funct. Genet. 24:1996;413-426
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
49
-
-
0030606223
-
Titration properties and thermodynamics of the transition state for folding: Comparison of two-state and multistate folding pathways
-
Tan Y.-J., Oliveberg M., Fersht A.R. Titration properties and thermodynamics of the transition state for folding comparison of two-state and multistate folding pathways. J. Mol. Biol. 264:1996;377-389
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 377-389
-
-
Tan, Y.-J.1
Oliveberg, M.2
Fersht, A.R.3
-
50
-
-
0014718113
-
Protein denaturation. Part C. Theoretical models for the mechanism of denaturation
-
Tanford C. Protein denaturation. Part C. Theoretical models for the mechanism of denaturation. Advan. Protein Chem. 24:1970;1-95
-
(1970)
Advan. Protein Chem.
, vol.24
, pp. 1-95
-
-
Tanford, C.1
-
51
-
-
0000050196
-
From minimal models to real proteins: Time scales for protein folding kinetics
-
Thirumalai D. From minimal models to real proteins time scales for protein folding kinetics. J. Phys. I. (France). 5:1995;1457-1467
-
(1995)
J. Phys. I. (France)
, vol.5
, pp. 1457-1467
-
-
Thirumalai, D.1
-
52
-
-
0030604696
-
Local interactions dominate folding in a simple protein model
-
Unger R., Moult J. Local interactions dominate folding in a simple protein model. J. Mol. Biol. 259:1996;988-994
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 988-994
-
-
Unger, R.1
Moult, J.2
-
53
-
-
0032512440
-
Slow cooperative folding of a small globular protein HPr
-
van Nuland N.A.J., Meijberg W., Warner J., Forge V., Scheek R.M., Robillard G.T., Dobson C.M. Slow cooperative folding of a small globular protein HPr. Biochemistry. 37:1998;622-637
-
(1998)
Biochemistry
, vol.37
, pp. 622-637
-
-
Van Nuland, N.A.J.1
Meijberg, W.2
Warner, J.3
Forge, V.4
Scheek, R.M.5
Robillard, G.T.6
Dobson, C.M.7
-
54
-
-
0028331876
-
Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition
-
Viguera A.R., Martínez J.C., Filimonov V.V., Mateo P.L., Serrano L. Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition. Biochemistry. 33:1994;2142-2150
-
(1994)
Biochemistry
, vol.33
, pp. 2142-2150
-
-
Viguera, A.R.1
Martínez, J.C.2
Filimonov, V.V.3
Mateo, P.L.4
Serrano, L.5
-
55
-
-
0028932770
-
The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics
-
Viguera A.R., Blanco F.J., Serrano L. The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics. J. Mol. Biol. 247:1995;670-681
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 670-681
-
-
Viguera, A.R.1
Blanco, F.J.2
Serrano, L.3
-
56
-
-
0029760326
-
Different folding transition states may result in the same native structure
-
Viguera A.R., Serrano L., Wilmanns M. Different folding transition states may result in the same native structure. Nature Struct. Biol. 3:1996;874-880
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 874-880
-
-
Viguera, A.R.1
Serrano, L.2
Wilmanns, M.3
-
57
-
-
0030623698
-
Favourable native-like helical local interactions can accelerate protein folding
-
Viguera A.R., Villegas V., Aviles F.X., Serrano L. Favourable native-like helical local interactions can accelerate protein folding. Folding Design. 2:1997;23-33
-
(1997)
Folding Design
, vol.2
, pp. 23-33
-
-
Viguera, A.R.1
Villegas, V.2
Aviles, F.X.3
Serrano, L.4
-
58
-
-
0028788480
-
Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2
-
Villegas V., Azuaga A., Catasús L., Reverter D., Mateo P.L., Avilés F.X., Serrano L. Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2. Biochemistry. 34:1995;15105-15110
-
(1995)
Biochemistry
, vol.34
, pp. 15105-15110
-
-
Villegas, V.1
Azuaga, A.2
Catasús, L.3
Reverter, D.4
Mateo, P.L.5
Avilés, F.X.6
Serrano, L.7
-
59
-
-
0029952910
-
Symmetry and the energy landscapes of biomolecules
-
Wolynes P.G. Symmetry and the energy landscapes of biomolecules. Proc. Natl Acad. Sci. USA. 93:1996;14249-14255
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 14249-14255
-
-
Wolynes, P.G.1
-
60
-
-
0030979740
-
Folding funnels and energy landscapes of larger proteins within the capillarity approximation
-
Wolynes P.G. Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proc. Natl Acad. Sci. USA. 94:1997;6170-6175
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6170-6175
-
-
Wolynes, P.G.1
-
61
-
-
0030631570
-
Characterization of the free energy spectrum of peptostreptococcal protein L
-
Yi Q., Scalley M.L., Simons K.T., Gladwin S.T., Baker D. Characterization of the free energy spectrum of peptostreptococcal protein L. Folding Design. 2:1997;271-280
-
(1997)
Folding Design
, vol.2
, pp. 271-280
-
-
Yi, Q.1
Scalley, M.L.2
Simons, K.T.3
Gladwin, S.T.4
Baker, D.5
-
62
-
-
0028882223
-
Simple model of protein folding kinetics
-
Zwanzig R. Simple model of protein folding kinetics. Proc. Natl Acad. Sci. USA. 92:1995;9801-9804
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9801-9804
-
-
Zwanzig, R.1
|