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Volumn 32, Issue 3, 2015, Pages 791-805

Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting

Author keywords

Ancient rapid radiation; Coalescent methods; Concatenation methods; Incomplete lineage sorting; Long branch artifacts

Indexed keywords

ARTIFACT; RADIATION; SPECIES; TREE OF LIFE; ANIMAL; BIOLOGICAL MODEL; BIOLOGY; DNA SEQUENCE; GENETIC DATABASE; GENETICS; MAMMAL; MOLECULAR EVOLUTION; PHYLOGENY; PROCEDURES; SPECIES DIFFERENTIATION;

EID: 84965093929     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu331     Document Type: Article
Times cited : (67)

References (80)
  • 1
    • 4444220955 scopus 로고    scopus 로고
    • Should we be worried about longbranch attraction in real data sets? Investigations using metazoan 18 S rDNA
    • Anderson FE, Swofford DL. 2004. Should we be worried about longbranch attraction in real data sets? Investigations using metazoan 18 S rDNA. Mol Phylogenet Evol. 33:440-451.
    • (2004) Mol Phylogenet Evol. , vol.33 , pp. 440-451
    • Anderson, F.E.1    Swofford, D.L.2
  • 2
    • 84883482283 scopus 로고    scopus 로고
    • Naive binning improves phylogenomic analyses
    • Bayzid MS, Warnow T. 2013. Naive binning improves phylogenomic analyses. Bioinformatics 29:2277-2284.
    • (2013) Bioinformatics , vol.29 , pp. 2277-2284
    • Bayzid, M.S.1    Warnow, T.2
  • 3
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. 2005. A review of long-branch attraction. Cladistics 21: 163-193.
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 4
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • Brinkmann H, Van der Giezen M, Zhou Y, De Raucourt GP, Philippe H. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol. 54:743-757.
    • (2005) Syst Biol. , vol.54 , pp. 743-757
    • Brinkmann, H.1    Van Der Giezen, M.2    Zhou, Y.3    De Raucourt, G.P.4    Philippe, H.5
  • 5
    • 40849120246 scopus 로고    scopus 로고
    • Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings
    • Carling MD, Brumfield RT. 2008. Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings. Genetics 178:363-377.
    • (2008) Genetics , vol.178 , pp. 363-377
    • Carling, M.D.1    Brumfield, R.T.2
  • 6
    • 34548057478 scopus 로고    scopus 로고
    • Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests
    • Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ. 2005. Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests. Am Nat. 165:E36-E65.
    • (2005) Am Nat. , vol.165 , pp. E36-E65
    • Davis, C.C.1    Webb, C.O.2    Wurdack, K.J.3    Jaramillo, C.A.4    Donoghue, M.J.5
  • 7
    • 33845627286 scopus 로고    scopus 로고
    • The supermatrix approach to systematics
    • de Queiroz A, Gatesy J. 2007. The supermatrix approach to systematics. Trends Ecol Evol. 22:34-41.
    • (2007) Trends Ecol Evol. , vol.22 , pp. 34-41
    • De Queiroz, A.1    Gatesy, J.2
  • 8
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • Degnan JH, Rosenberg NA. 2006. Discordance of species trees with their most likely gene trees. PLoS Genet. 2:e68.
    • (2006) PLoS Genet. , vol.2 , pp. e68
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 9
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan JH, Rosenberg NA. 2009. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol. 24: 332-340.
    • (2009) Trends Ecol Evol. , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 11
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards SV. 2009. Is a new and general theory of molecular systematics emerging? Evolution 63:1-19.
    • (2009) Evolution , vol.63 , pp. 1-19
    • Edwards, S.V.1
  • 12
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool. 27:401-410.
    • (1978) Syst Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 13
    • 78650511270 scopus 로고    scopus 로고
    • Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
    • Finet C, Timme RE, Delwiche CF, Marlétaz F. 2010. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Curr Biol. 20:2217-2222.
    • (2010) Curr Biol. , vol.20 , pp. 2217-2222
    • Finet, C.1    Timme, R.E.2    Delwiche, C.F.3    Marlétaz, F.4
  • 14
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
    • (2010) Syst Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 15
    • 56849104634 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of phylogenetic analyses
    • Heath TA, Hedtke SM, Hillis DM. 2008. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol. 46:239-257.
    • (2008) J Syst Evol. , vol.46 , pp. 239-257
    • Heath, T.A.1    Hedtke, S.M.2    Hillis, D.M.3
  • 17
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ. 2010. Bayesian inference of species trees from multilocus data. Mol Biol Evol. 27:570-580.
    • (2010) Mol Biol Evol. , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 18
    • 79961133759 scopus 로고    scopus 로고
    • Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: Yeasts revisited
    • Hess J, Goldman N. 2011. Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited. PLoS One 6: e22783.
    • (2011) PLoS One , vol.6
    • Hess, J.1    Goldman, N.2
  • 19
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • Hillis DM, Huelsenbeck JP, Cunningham CW. 1994. Application and accuracy of molecular phylogenies. Science 264:671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 20
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulation
    • Huelsenbeck JP. 1995. Performance of phylogenetic methods in simulation. Syst Biol. 44:17-48.
    • (1995) Syst Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 21
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Huelsenbeck JP, Hillis DM. 1993. Success of phylogenetic methods in the four-taxon case. Syst Biol. 42:247-264.
    • (1993) Syst Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.P.1    Hillis, D.M.2
  • 22
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • In: Munro HN, editor. New York: Academic Press
    • Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press. p. 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 23
    • 84959806898 scopus 로고
    • A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Zool. 38: 7-25.
    • (1989) Syst Zool. , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 24
    • 77949525939 scopus 로고    scopus 로고
    • Long-branch attraction bias and inconsistency in Bayesian phylogenetics
    • Kolaczkowski B, Thornton JW. 2009. Long-branch attraction bias and inconsistency in Bayesian phylogenetics. PLoS One 4:e7891.
    • (2009) PLoS One , vol.4
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 25
    • 63549118031 scopus 로고    scopus 로고
    • STEM: Species tree estimation using maximum likelihood for gene trees under coalescence
    • Kubatko LS, Carstens BC, Knowles LL. 2009. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25:971-973.
    • (2009) Bioinformatics , vol.25 , pp. 971-973
    • Kubatko, L.S.1    Carstens, B.C.2    Knowles, L.L.3
  • 26
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko LS, Degnan JH. 2007. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst Biol. 56:17-24.
    • (2007) Syst Biol. , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 27
    • 84860783879 scopus 로고    scopus 로고
    • Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model
    • Kück P, Mayer C,Wägele J-W, Misof B. 2012. Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model. PLoS One 7:e36593.
    • (2012) PLoS One , vol.7
    • Kück, P.1    Mayer, C.2    Wägele, J.-W.3    Misof, B.4
  • 28
    • 84904966117 scopus 로고    scopus 로고
    • Bears in a forest of gene trees: Phylogenetic inference is complicated by incomplete lineage sorting and gene flow
    • Kutschera VE, Bidon T, Hailer F, Rodi JL, Fain SR, Janke A. 2014. Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow.Mol Biol Evol. 31:2004-2017.
    • (2014) Mol Biol Evol. , vol.31 , pp. 2004-2017
    • Kutschera, V.E.1    Bidon, T.2    Hailer, F.3    Rodi, J.L.4    Fain, S.R.5    Janke, A.6
  • 29
    • 77955657333 scopus 로고    scopus 로고
    • Watching the clock: Studying variation in rates of molecular evolution between species
    • Lanfear R, Welch JJ, Bromham L. 2010. Watching the clock: studying variation in rates of molecular evolution between species. Trends Ecol Evol. 25:495-503.
    • (2010) Trends Ecol Evol. , vol.25 , pp. 495-503
    • Lanfear, R.1    Welch, J.J.2    Bromham, L.3
  • 30
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 7(Suppl 1):S4.
    • (2007) BMC Evol Biol. , vol.7 , pp. S4
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 31
    • 79951561454 scopus 로고    scopus 로고
    • The accuracy of species tree estimation under simulation: A comparison of methods
    • Leaché AD, Rannala B. 2011. The accuracy of species tree estimation under simulation: a comparison of methods. Syst Biol. 60:126-137.
    • (2011) Syst Biol. , vol.60 , pp. 126-137
    • Leaché, A.D.1    Rannala, B.2
  • 33
    • 54949090066 scopus 로고    scopus 로고
    • BEST: Bayesian estimation of species trees under the coalescent model
    • Liu L. 2008. BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics 24:2542-2543.
    • (2008) Bioinformatics , vol.24 , pp. 2542-2543
    • Liu, L.1
  • 34
    • 70349417912 scopus 로고    scopus 로고
    • Phylogenetic analysis in the anomaly zone
    • Liu L, Edwards SV. 2009. Phylogenetic analysis in the anomaly zone. Syst Biol. 58:452-460.
    • (2009) Syst Biol. , vol.58 , pp. 452-460
    • Liu, L.1    Edwards, S.V.2
  • 35
    • 77951961553 scopus 로고    scopus 로고
    • Phybase: An R package for species tree analysis
    • Liu L, Yu L. 2010. Phybase: an R package for species tree analysis. Bioinformatics 26:962-963.
    • (2010) Bioinformatics , vol.26 , pp. 962-963
    • Liu, L.1    Yu, L.2
  • 36
    • 80051975928 scopus 로고    scopus 로고
    • Estimating species trees from unrooted gene trees
    • Liu L, Yu L. 2011. Estimating species trees from unrooted gene trees. Syst Biol. 60:661-667.
    • (2011) Syst Biol. , vol.60 , pp. 661-667
    • Liu, L.1    Yu, L.2
  • 37
    • 77957686501 scopus 로고    scopus 로고
    • A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
    • Liu L, Yu L, Edwards SV. 2010. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. BMC Evol Biol. 10:302.
    • (2010) BMC Evol Biol. , vol.10 , pp. 302
    • Liu, L.1    Yu, L.2    Edwards, S.V.3
  • 39
    • 70349425459 scopus 로고    scopus 로고
    • Estimating species phylogenies using coalescence times among sequences
    • Liu L, Yu L, Pearl DK, Edwards SV. 2009. Estimating species phylogenies using coalescence times among sequences. Syst Biol. 58:468-477.
    • (2009) Syst Biol. , vol.58 , pp. 468-477
    • Liu, L.1    Yu, L.2    Pearl, D.K.3    Edwards, S.V.4
  • 40
    • 0031307210 scopus 로고    scopus 로고
    • Escaping from the Felsenstein zone by detecting long branches in phylogenetic data
    • Lyons-Weiler J, Hoelzer GA. 1997. Escaping from the Felsenstein zone by detecting long branches in phylogenetic data. Mol Phylogenet Evol. 8: 375-384.
    • (1997) Mol Phylogenet Evol. , vol.8 , pp. 375-384
    • Lyons-Weiler, J.1    Hoelzer, G.A.2
  • 41
    • 84978808477 scopus 로고    scopus 로고
    • Evaluating summary methods formulti-locus species tree estimation in the presence of incomplete lineage sorting
    • Mirarab S, Bayzid MS, Warnow T. 2014. Evaluating summary methods formulti-locus species tree estimation in the presence of incomplete lineage sorting. Syst Biol. doi: 10.1093/sysbio/syu063.
    • (2014) Syst Biol.
    • Mirarab, S.1    Bayzid, M.S.2    Warnow, T.3
  • 43
    • 0023822631 scopus 로고
    • Relationships between gene trees and species trees
    • Pamilo P, Nei M. 1988. Relationships between gene trees and species trees. Mol Biol Evol. 5:568-583.
    • (1988) Mol Biol Evol. , vol.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 46
    • 84555190271 scopus 로고    scopus 로고
    • Difficult phylogenetic questions: More data, maybe; Better methods, certainly
    • Philippe H, Roure B. 2011. Difficult phylogenetic questions: more data, maybe; better methods, certainly. BMC Biol. 9:91.
    • (2011) BMC Biol. , vol.9 , pp. 91
    • Philippe, H.1    Roure, B.2
  • 48
    • 0035722246 scopus 로고    scopus 로고
    • Biases in maximum likelihood and parsimony: A simulation approach to a 10-taxon case
    • Pol D, Siddall ME. 2001. Biases in maximum likelihood and parsimony: a simulation approach to a 10-taxon case. Cladistics 17:266-281.
    • (2001) Cladistics , vol.17 , pp. 266-281
    • Pol, D.1    Siddall, M.E.2
  • 49
    • 33750437728 scopus 로고    scopus 로고
    • Widespread discordance of gene trees with species tree in Drosophila: Evidence for incomplete lineage sorting
    • Pollard DA, Iyer VN, Moses AM, Eisen MB. 2006. Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet. 2:e173.
    • (2006) PLoS Genet. , vol.2 , pp. e173
    • Pollard, D.A.1    Iyer, V.N.2    Moses, A.M.3    Eisen, M.B.4
  • 50
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A, Grassly NC. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci. 13:235-238.
    • (1997) Comput Appl Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 51
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala B, Yang Z. 2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164:1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 53
    • 84878113118 scopus 로고    scopus 로고
    • Inferring ancient divergences requires genes with strong phylogenetic signals
    • Salichos L, Rokas A. 2013. Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497:327-331.
    • (2013) Nature , vol.497 , pp. 327-331
    • Salichos, L.1    Rokas, A.2
  • 54
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol. 19:101-109.
    • (2002) Mol Biol Evol. , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 55
    • 0034069504 scopus 로고    scopus 로고
    • Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants
    • Sanderson MJ, Wojciechowski MF, Hu J-M, Khan TS, Brady SG. 2000. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants. Mol Biol Evol. 17:782-797.
    • (2000) Mol Biol Evol. , vol.17 , pp. 782-797
    • Sanderson, M.J.1    Wojciechowski, M.F.2    Hu, J.-M.3    Khan, T.S.4    Brady, S.G.5
  • 56
    • 50949129519 scopus 로고    scopus 로고
    • Calculating bootstrap probabilities of phylogeny using multilocus sequence data
    • Seo TK. 2008. Calculating bootstrap probabilities of phylogeny using multilocus sequence data. Mol Biol Evol. 25:960-971.
    • (2008) Mol Biol Evol. , vol.25 , pp. 960-971
    • Seo, T.K.1
  • 57
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: Longbranch repulsion by likelihood in the Farris Zone
    • Siddall ME. 1998. Success of parsimony in the four-taxon case: longbranch repulsion by likelihood in the Farris Zone. Cladistics 14: 209-220.
    • (1998) Cladistics , vol.14 , pp. 209-220
    • Siddall, M.E.1
  • 59
    • 53349160132 scopus 로고    scopus 로고
    • Rates of molecular evolution are linked to life history in flowering plants
    • Smith SA, Donoghue MJ. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science 322:86-89.
    • (2008) Science , vol.322 , pp. 86-89
    • Smith, S.A.1    Donoghue, M.J.2
  • 61
    • 84866289853 scopus 로고    scopus 로고
    • Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
    • Song S, Liu L, Edwards SV, Wu S. 2012. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc Natl Acad Sci U S A. 109:14942-14947.
    • (2012) Proc Natl Acad Sci U S A. , vol.109 , pp. 14942-14947
    • Song, S.1    Liu, L.2    Edwards, S.V.3    Wu, S.4
  • 62
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 63
    • 10644253746 scopus 로고    scopus 로고
    • Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
    • Stefanović S, Rice DW, Palmer JD. 2004. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol Biol. 4:35.
    • (2004) BMC Evol Biol. , vol.4 , pp. 35
    • Stefanović, S.1    Rice, D.W.2    Palmer, J.D.3
  • 64
    • 0035527406 scopus 로고    scopus 로고
    • Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
    • Swofford DL,Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst Biol. 50: 525-539.
    • (2001) Syst Biol. , vol.50 , pp. 525-539
    • Swofford, D.L.1    Waddell, P.J.2    Huelsenbeck, J.P.3    Foster, P.G.4    Lewis, P.O.5    Rogers, J.S.6
  • 65
    • 84855858792 scopus 로고    scopus 로고
    • Broad phylogenomic sampling and the sister lineage of land plants
    • Timme RE, Bachvaroff TR, Delwiche CF. 2012. Broad phylogenomic sampling and the sister lineage of land plants. PLoS One 7:e29696.
    • (2012) PLoS One , vol.7
    • Timme, R.E.1    Bachvaroff, T.R.2    Delwiche, C.F.3
  • 68
    • 40349084441 scopus 로고    scopus 로고
    • Ancient rapid radiations of insects: Challenges for phylogenetic analysis
    • Whitfield JB, Kjer KM. 2008. Ancient rapid radiations of insects: challenges for phylogenetic analysis. Annu Rev Entomol. 53:449-472.
    • (2008) Annu Rev Entomol. , vol.53 , pp. 449-472
    • Whitfield, J.B.1    Kjer, K.M.2
  • 70
    • 30344464074 scopus 로고    scopus 로고
    • Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?
    • Wiens JJ. 2005. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Syst Bio.l 54:731-742.
    • (2005) Syst Bio.l , vol.54 , pp. 731-742
    • Wiens, J.J.1
  • 71
    • 0012871763 scopus 로고    scopus 로고
    • Combining data in phylogenetic analysis
    • William J, Ballard O. 1996. Combining data in phylogenetic analysis. Trends Ecol Evol. 11:334.
    • (1996) Trends Ecol Evol. , vol.11 , pp. 334
    • William, J.1    Ballard, O.2
  • 74
    • 84857687426 scopus 로고    scopus 로고
    • Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
    • Wu Y. 2012. Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood. Evolution 66:763-775.
    • (2012) Evolution , vol.66 , pp. 763-775
    • Wu, Y.1
  • 75
    • 69249202458 scopus 로고    scopus 로고
    • Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life
    • Wurdack KJ, Davis CC. 2009. Malpighiales phylogenetics: gaining ground on one of the most recalcitrant clades in the angiosperm tree of life. Am J Bot. 96:1551-1570.
    • (2009) Am J Bot. , vol.96 , pp. 1551-1570
    • Wurdack, K.J.1    Davis, C.C.2
  • 76
    • 84919947905 scopus 로고    scopus 로고
    • Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
    • Xi Z, Liu L, Rest JS, Davis CC. 2014. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Syst Biol. 63:919-932.
    • (2014) Syst Biol. , vol.63 , pp. 919-932
    • Xi, Z.1    Liu, L.2    Rest, J.S.3    Davis, C.C.4
  • 77
    • 84894052682 scopus 로고    scopus 로고
    • Phylogenomics and coalescent analyses resolve extant seed plant relationships
    • Xi Z, Rest JS, Davis CC. 2013. Phylogenomics and coalescent analyses resolve extant seed plant relationships. PLoS One 8:e80870.
    • (2013) PLoS One , vol.8
    • Xi, Z.1    Rest, J.S.2    Davis, C.C.3
  • 79
    • 84883284590 scopus 로고    scopus 로고
    • Origin of land plants using the multispecies coalescent model
    • Zhong B, Liu L, Yan Z, Penny D. 2013. Origin of land plants using the multispecies coalescent model. Trends Plant Sci. 18:492-495.
    • (2013) Trends Plant Sci. , vol.18 , pp. 492-495
    • Zhong, B.1    Liu, L.2    Yan, Z.3    Penny, D.4
  • 80
    • 84555186853 scopus 로고    scopus 로고
    • Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals
    • Zhou X, Xu S, Xu J, Chen B, Zhou K, Yang G. 2012. Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals. Syst Biol. 61:150-164.
    • (2012) Syst Biol. , vol.61 , pp. 150-164
    • Zhou, X.1    Xu, S.2    Xu, J.3    Chen, B.4    Zhou, K.5    Yang, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.