-
2
-
-
0028347983
-
Evolution of primate cytochrome c oxidase subunit II gene
-
ADKINS, R. M., and R. L. HONEYCUTT. 1994. Evolution of primate cytochrome c oxidase subunit II gene. J. Mol. Evol. 38:215-231.
-
(1994)
J. Mol. Evol.
, vol.38
, pp. 215-231
-
-
Adkins, R.M.1
Honeycutt, R.L.2
-
3
-
-
0001293249
-
Functional constraints and rbcL evidence for land plant phylogeny
-
ALBERT, V. A., A. BACKLUND, K. BREMER, M. W. CHASE, J. R. MANHART, B. D. MISHLER, and K. C. NIXON. 1994. Functional constraints and rbcL evidence for land plant phylogeny. Ann. Mo. Bot. Gard. 81:534-567.
-
(1994)
Ann. Mo. Bot. Gard.
, vol.81
, pp. 534-567
-
-
Albert, V.A.1
Backlund, A.2
Bremer, K.3
Chase, M.W.4
Manhart, J.R.5
Mishler, B.D.6
Nixon, K.C.7
-
4
-
-
0033117920
-
Distance measures in terms of substitution process
-
BAKKE, E., and A. VON HAESELER. 1999. Distance measures in terms of substitution process. Theor. Popul. Biol. 55:166-175.
-
(1999)
Theor. Popul. Biol.
, vol.55
, pp. 166-175
-
-
Bakke, E.1
Von Haeseler, A.2
-
5
-
-
0000583137
-
Are third positions really that bad? A test using vertebrate cytochrome b
-
BJÖRKLAND, M. 1999. Are third positions really that bad? A test using vertebrate cytochrome b. Cladistics 15:191-197.
-
(1999)
Cladistics
, vol.15
, pp. 191-197
-
-
Björkland, M.1
-
6
-
-
0026778673
-
Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
-
BOUSQUET, J., S. H. STRAUSS, A. H. DOERKSEN, and R. A. PRICE. 1992. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. USA 89:7844-7848.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 7844-7848
-
-
Bousquet, J.1
Strauss, S.H.2
Doerksen, A.H.3
Price, R.A.4
-
7
-
-
0034636023
-
Phylogeny of seed plants based on all three plant genomic compartments: Extant gymnosperms are monophyletic and Gnetales are derived conifers
-
in press
-
BOWE, L. M., G. COAT, and C. W. DEPAMPHILIS. 2000. Phylogeny of seed plants based on all three plant genomic compartments: extant gymnosperms are monophyletic and Gnetales are derived conifers. Proc. Natl. Acad. Sci. USA (in press).
-
(2000)
Proc. Natl. Acad. Sci. USA
-
-
Bowe, L.M.1
Coat, G.2
DePamphilis, C.W.3
-
8
-
-
0030436626
-
Wood, bark, and stem anatomy of Gnetales: A summary
-
CARLQUIST, S. 1996. Wood, bark, and stem anatomy of Gnetales: a summary. Int. J. Plant Sci. 157(Suppl.):S58-S76.
-
(1996)
Int. J. Plant Sci.
, vol.157
, Issue.SUPPL.
-
-
Carlquist, S.1
-
9
-
-
0028963581
-
Do long branches attract flies?
-
CARMEAN, D., and B. CRESPI. 1995. Do long branches attract flies? Nature 373:666.
-
(1995)
Nature
, vol.373
, pp. 666
-
-
Carmean, D.1
Crespi, B.2
-
10
-
-
0029919254
-
Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters
-
CHANG, J. T. 1996. Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters. Math. Biosci. 134:189-215.
-
(1996)
Math. Biosci.
, vol.134
, pp. 189-215
-
-
Chang, J.T.1
-
11
-
-
0000031660
-
Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
-
CHASE, M. W., D. E. SOLTIS, R. G. OLMSTEAD et al. (39 coauthors). 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 80:528-580.
-
(1993)
Ann. Mo. Bot. Gard.
, vol.80
, pp. 528-580
-
-
Chase, M.W.1
Soltis, D.E.2
Olmstead, R.G.3
-
12
-
-
0034636037
-
Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
-
in press
-
CHAW, S.-M., C. L. PARKINSON, Y. CHENG, T. M. VINCENT, and J. D. PALMER. 2000. Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc. Natl. Acad. Sci. USA (in press).
-
(2000)
Proc. Natl. Acad. Sci. USA
-
-
Chaw, S.-M.1
Parkinson, C.L.2
Cheng, Y.3
Vincent, T.M.4
Palmer, J.D.5
-
13
-
-
0031012107
-
Molecular phylogeny of extant gymnosperms and seed plant evolution: Analysis of nuclear 18S rRNA sequences
-
CHAW, S.-M., A. ZHARKIKH, H.-M. SUNG, T.-C. LAU, and W.-H. LI. 1997. Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences. Mol. Biol. Evol. 14:56-68.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 56-68
-
-
Chaw, S.-M.1
Zharkikh, A.2
Sung, H.-M.3
Lau, T.-C.4
Li, W.-H.5
-
14
-
-
0000863074
-
Phylogenetic analysis of seed plants and the origin of angiosperms
-
CRANE, P. R. 1985. Phylogenetic analysis of seed plants and the origin of angiosperms. Ann. Mo. Bot. Gard. 72:716-793.
-
(1985)
Ann. Mo. Bot. Gard.
, vol.72
, pp. 716-793
-
-
Crane, P.R.1
-
15
-
-
0000228203
-
A model of evolutionary change in proteins
-
M. O. DAYHOFF, ed. National Biomedical Research Foundation, Washington, D.C.
-
DAYHOFF, M. O., R. M. SCHWARTZ, and B. C. ORCUTT. 1978. A model of evolutionary change in proteins. Pp. 345-352 in M. O. DAYHOFF, ed. Atlas of protein sequence and structure. Vol. 5, Suppl. 3. National Biomedical Research Foundation, Washington, D.C.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, Issue.SUPPL. 3
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
16
-
-
0030431040
-
Seed plant phylogeny and the relationships of Gnetales
-
DOYLE, J. A. 1996. Seed plant phylogeny and the relationships of Gnetales. Int. J. Plant Sci. 157(Suppl. 6):S3-S39.
-
(1996)
Int. J. Plant Sci.
, vol.157
, Issue.SUPPL. 6
-
-
Doyle, J.A.1
-
17
-
-
0001234321
-
Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach
-
DOYLE, J. A., and M. J. DONOGHUE. 1986. Seed plant phylogeny and the origin of angiosperms: an experimental cladistic approach. Bot. Rev. 52:321-431.
-
(1986)
Bot. Rev.
, vol.52
, pp. 321-431
-
-
Doyle, J.A.1
Donoghue, M.J.2
-
18
-
-
0001858968
-
Fossils and seed plant phylogeny reanalyzed
-
_. 1992. Fossils and seed plant phylogeny reanalyzed. Brittonia 44:89-106.
-
(1992)
Brittonia
, vol.44
, pp. 89-106
-
-
-
19
-
-
0029468060
-
Constructing a significance test for incongruence
-
FARRIS, J. S., M. KÄLLERSJÖ, A. G. KLUGE, and C. BULT. 1995. Constructing a significance test for incongruence. Syst. Biol. 44:570-572.
-
(1995)
Syst. Biol.
, vol.44
, pp. 570-572
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bult, C.4
-
20
-
-
0001306645
-
A likelihood approach to character weighting and what it tells us about parsimony and compatibility
-
FELSENSTEIN, J. 1978. A likelihood approach to character weighting and what it tells us about parsimony and compatibility. Biol. J. Linn. Soc. 16:183-196.
-
(1978)
Biol. J. Linn. Soc.
, vol.16
, pp. 183-196
-
-
Felsenstein, J.1
-
21
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
_. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
-
23
-
-
0002557518
-
Molecular clocks and nucleotide substitution rates in higher plants
-
M. K. HECHT, ed. Plenum Press, New York
-
GAUT, B. 1998. Molecular clocks and nucleotide substitution rates in higher plants. Pp. 93-120 in M. K. HECHT, ed. Evolutionary biology. Vol. 30. Plenum Press, New York.
-
(1998)
Evolutionary Biology
, vol.30
, pp. 93-120
-
-
Gaut, B.1
-
24
-
-
0033117745
-
The role of population size in molecular evolution
-
GILLESPIE, J. H. 1999. The role of population size in molecular evolution. Theor. Popl. Biol. 55:145-156.
-
(1999)
Theor. Popl. Biol.
, vol.55
, pp. 145-156
-
-
Gillespie, J.H.1
-
25
-
-
0030052344
-
Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms
-
GOREMYKIN, V., V. BOBROVA, J. PAHNKE, A. TROITSKY, A. ANTONOV, and W. MARTIN. 1996. Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms. Mol. Biol. Evol. 13:383-396.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 383-396
-
-
Goremykin, V.1
Bobrova, V.2
Pahnke, J.3
Troitsky, A.4
Antonov, A.5
Martin, W.6
-
27
-
-
0033010029
-
Gnetum and the angiosperms: Molecular evidence that their shared morphological characters are convergent rather than homologous
-
HANSEN, A., S. HANSMANN, T. SAMIGULLIN, A. ANTONOV, and W. MARTIN. 1999. Gnetum and the angiosperms: molecular evidence that their shared morphological characters are convergent rather than homologous. Mol. Biol. Evol. 16:1006-1009.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1006-1009
-
-
Hansen, A.1
Hansmann, S.2
Samigullin, T.3
Antonov, A.4
Martin, W.5
-
28
-
-
51249164812
-
Phylogeny of gymnosperms inferred from rbcL gene sequences
-
HASEBE, M., R. KOFUJI, M. ITO, M. KATO, K. IWATSUKI, and K. UEDA. 1992. Phylogeny of gymnosperms inferred from rbcL gene sequences. Bot. Mag. (Tokyo) 105:673-679.
-
(1992)
Bot. Mag. (Tokyo)
, vol.105
, pp. 673-679
-
-
Hasebe, M.1
Kofuji, R.2
Ito, M.3
Kato, M.4
Iwatsuki, K.5
Ueda, K.6
-
29
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
HENDY, M. D., and D. PENNY. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309.
-
(1989)
Syst. Zool.
, vol.38
, pp. 297-309
-
-
Hendy, M.D.1
Penny, D.2
-
30
-
-
0029113744
-
The robustness of two phylogenetic methods: Four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor-joining
-
HUELSENBECK, J. P. 1995. The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor-joining. Mol. Biol. Evol. 12:843-849.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 843-849
-
-
Huelsenbeck, J.P.1
-
31
-
-
0031084114
-
Is the Felsenstein Zone a fly trap?
-
_. 1997. Is the Felsenstein Zone a fly trap? Syst. Biol. 46:69-74.
-
(1997)
Syst. Biol.
, vol.46
, pp. 69-74
-
-
-
32
-
-
0032148641
-
Systematic bias in phylogenetic analysis: Is the Strepsiptera problem solved?
-
_. 1998. Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved? Syst. Biol. 47:519-537.
-
(1998)
Syst. Biol.
, vol.47
, pp. 519-537
-
-
-
33
-
-
0002410257
-
Parametric bootstrapping in molecular phylogenetics: Applications and performance
-
J. D. FERRARIS and S. R. PALUMBI, eds. Wiley-Liss, New York
-
HUELSENBECK, J. P., D. M. HILLIS, and R. JONES. 1996. Parametric bootstrapping in molecular phylogenetics: applications and performance. Pp. 19-45 in J. D. FERRARIS and S. R. PALUMBI, eds. Molecular zoology: advances, strategies and protocols. Wiley-Liss, New York.
-
(1996)
Molecular Zoology: Advances, Strategies and Protocols
, pp. 19-45
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
Jones, R.3
-
34
-
-
0032773940
-
Homoplasy increases phylogenetic structure
-
KÄLLERSJÖ, M., V. A. ALBERT, and J. S. FARRIS. 1999. Homoplasy increases phylogenetic structure. Cladistics 15:91-93.
-
(1999)
Cladistics
, vol.15
, pp. 91-93
-
-
Källersjö, M.1
Albert, V.A.2
Farris, J.S.3
-
35
-
-
0032028996
-
Large-scale phylogenies and measuring the performance of phylogenetic estimators
-
KIM, J. 1998. Large-scale phylogenies and measuring the performance of phylogenetic estimators. Syst. Biol. 47:43-60.
-
(1998)
Syst. Biol.
, vol.47
, pp. 43-60
-
-
Kim, J.1
-
38
-
-
0028361182
-
Recovering evolutionary trees under more realistic model of sequence evolution
-
LOCKHART, P. J., M. A. STEEL, M. D. HENDY, and D. PENNY. 1994. Recovering evolutionary trees under more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
39
-
-
0001392984
-
Cladistics of the spermatophyta
-
LOCONTE, H., and D. W. STEVENSON. 1990. Cladistics of the Spermatophyta. Brittonia 42:197-211.
-
(1990)
Brittonia
, vol.42
, pp. 197-211
-
-
Loconte, H.1
Stevenson, D.W.2
-
40
-
-
0031307210
-
Escaping from the Felsenstein Zone by detecting long branches in phylogenetic data
-
LYONS-WEILER, J., and G. A. HOELZER. 1997. Escaping from the Felsenstein Zone by detecting long branches in phylogenetic data. Mol. Phylogenet. Evol. 8:375-384.
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 375-384
-
-
Lyons-Weiler, J.1
Hoelzer, G.A.2
-
41
-
-
0001705679
-
Phylogeny of carabid beetles inferred from 18S ribosomal DNA (Coleoptera: Carabidae)
-
MADDISON, D. R., M. D. BAKER, and K. A. OBER. 1999. Phylogeny of carabid beetles inferred from 18S ribosomal DNA (Coleoptera: Carabidae). Syst. Entomol. 24:103-138.
-
(1999)
Syst. Entomol.
, vol.24
, pp. 103-138
-
-
Maddison, D.R.1
Baker, M.D.2
Ober, K.A.3
-
43
-
-
0028156627
-
Shortcomings of the cytochrome b gene as a molecular marker
-
MEYER, A. 1994. Shortcomings of the cytochrome b gene as a molecular marker. TREE 9:278-280.
-
(1994)
TREE
, vol.9
, pp. 278-280
-
-
Meyer, A.1
-
44
-
-
0000271756
-
A reevaluation of seed plant phylogeny
-
NIXON, K. C., W. L. CREPET, D. STEVENSON, and E. M. FRIIS. 1994. A reevaluation of seed plant phylogeny. Ann. Mo. Bot. Gard. 81:484-533.
-
(1994)
Ann. Mo. Bot. Gard.
, vol.81
, pp. 484-533
-
-
Nixon, K.C.1
Crepet, W.L.2
Stevenson, D.3
Friis, E.M.4
-
46
-
-
0033529817
-
Forty million years of mutualism: Evidence for Eocene origin of the yucca-yucca moth association
-
PELLMYR, O., and J. LEEBENS-MACK. 1999. Forty million years of mutualism: evidence for Eocene origin of the yucca-yucca moth association. Proc. Natl. Acad. Sci. USA 96:9178-9183.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9178-9183
-
-
Pellmyr, O.1
Leebens-Mack, J.2
-
47
-
-
0030928378
-
Seq-Gen: An application for the monte-carlo simulation of DNA sequence evolution along phylogenetic trees
-
RAMBAUT, A., and N. C. GRASSLY. 1997. Seq-Gen: an application for the monte-carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
48
-
-
0002032093
-
A rare chloroplast DNA structural mutation is shared by all conifers
-
RAUBESON, L. A., and R. K. JANSEN 1992. A rare chloroplast DNA structural mutation is shared by all conifers. Biochem. Syst. Ecol. 20:17-24.
-
(1992)
Biochem. Syst. Ecol.
, vol.20
, pp. 17-24
-
-
Raubeson, L.A.1
Jansen, R.K.2
-
50
-
-
0027947860
-
Lignophyte phylogeny and the evolution of spermatophytes: A numerical cladistic analysis
-
ROTHWELL, G. R., and R. SERBET. 1994. Lignophyte phylogeny and the evolution of spermatophytes: a numerical cladistic analysis. Syst. Bot. 19:443-482.
-
(1994)
Syst. Bot.
, vol.19
, pp. 443-482
-
-
Rothwell, G.R.1
Serbet, R.2
-
51
-
-
0000215283
-
Success of parsimony in the four-taxon case: Long branch repulsion by likelihood in the Farris zone
-
SIDDALL, M. E. 1998. Success of parsimony in the four-taxon case: long branch repulsion by likelihood in the Farris zone. Cladistics 14:209-220.
-
(1998)
Cladistics
, vol.14
, pp. 209-220
-
-
Siddall, M.E.1
-
52
-
-
0032729841
-
The phylogeny of land plants inferred from 18s rDNA sequences: Pushing the limits of rDNA signal?
-
SOLTIS, P. S., D. E. SOLTIS, P. G. WOLF, D. L. NICKRENT, S.-M. CHAW, and R. L. CHAPMAN. 1999. The phylogeny of land plants inferred from 18s rDNA sequences: pushing the limits of rDNA signal? Mol. Biol. Evol. 16:1774-1784.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1774-1784
-
-
Soltis, P.S.1
Soltis, D.E.2
Wolf, P.G.3
Nickrent, D.L.4
Chaw, S.-M.5
Chapman, R.L.6
-
53
-
-
0031760237
-
Support for a monophyletic lemuriformes: Overcoming incongruence between data partitions
-
STANGER-HALL, K., and C. W. CUNNINGHAM. 1998. Support for a monophyletic lemuriformes: overcoming incongruence between data partitions. Mol. Biol. Evol. 15:1572-1577.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1572-1577
-
-
Stanger-Hall, K.1
Cunningham, C.W.2
-
56
-
-
0001336205
-
Phylogeny reconstruction
-
D. M. HILLIS, C. MORITZ, and B. K. MABLE, eds. Sinauer, Sunderland, Mass.
-
SWOFFORD, D. L., G. K. OLSEN, P. J. WADDELL, and D. M. HILLIS. 1996. Phylogeny reconstruction. Pp. 407-514 in D. M. HILLIS, C. MORITZ, and B. K. MABLE, eds. Molecular systematics. 2nd edition. Sinauer, Sunderland, Mass.
-
(1996)
Molecular Systematics. 2nd Edition
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.K.2
Waddell, P.J.3
Hillis, D.M.4
-
57
-
-
0033595002
-
MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants
-
WINTER, K.-U., A. BECKER, T. MUNSTER, J. T. KIM, H. SAEDLER, and G. THEISSEN. 1999. MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants. Proc. Natl. Acad. Sci. USA 96:7342-7347.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7342-7347
-
-
Winter, K.-U.1
Becker, A.2
Munster, T.3
Kim, J.T.4
Saedler, H.5
Theissen, G.6
-
58
-
-
0032028624
-
On the best evolutionary rate for phylogenetic analysis
-
YANG, Z. 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47:125-133.
-
(1998)
Syst. Biol.
, vol.47
, pp. 125-133
-
-
Yang, Z.1
-
59
-
-
0029954125
-
Molecular evolutionary dynamics of cytochrome beta in strepsirrhine primates: The phylogenetic significance of third-position transversions
-
YODER, A. D., R. VILGALYS, and M. RUVOLO. 1996. Molecular evolutionary dynamics of cytochrome beta in strepsirrhine primates: the phylogenetic significance of third-position transversions. Mol. Biol. Evol. 13:1339-1350.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1339-1350
-
-
Yoder, A.D.1
Vilgalys, R.2
Ruvolo, M.3
-
60
-
-
0028108336
-
Estimation of evolutionary distances between nucleotide sequences
-
ZHARKIKH, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 39:315-329.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 315-329
-
-
Zharkikh, A.1
|