메뉴 건너뛰기




Volumn 164, Issue 4, 2003, Pages 1645-1656

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; DNA SEQUENCE; EVOLUTION; GENE LOCUS; GENETIC MODEL; GENETIC VARIABILITY; HUMAN; MONTE CARLO METHOD; NONHUMAN; POPULATION GENETICS; POPULATION SIZE; PRIORITY JOURNAL; PROBABILITY; SPECIES DIFFERENCE;

EID: 0041817551     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (891)

References (37)
  • 1
    • 0033994020 scopus 로고    scopus 로고
    • Inference from gene trees in a subdivided population
    • BAHLO, M., and R. C. GRIFFITHS, 2000 Inference from gene trees in a subdivided population. Theor. Popul. Biol. 57: 79-95.
    • (2000) Theor. Popul. Biol. , vol.57 , pp. 79-95
    • Bahlo, M.1    Griffiths, R.C.2
  • 2
    • 0032979748 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach
    • BEERLI, P., and J. FELSENSTEIN, 1999 Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152: 763-773.
    • (1999) Genetics , vol.152 , pp. 763-773
    • Beerli, P.1    Felsenstein, J.2
  • 3
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • BEERLI, P., and J. FELSENSTEIN, 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98: 4563-4568.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 4
    • 0037062935 scopus 로고    scopus 로고
    • A new hominid from the Upper Miocene of Chad, Central Africa
    • BRUNET, M., F. GUY, D. PILBEAM, H. T. MACKAYE, A. LIKIUS et al., 2002 A new hominid from the Upper Miocene of Chad, Central Africa. Nature 418: 145-151.
    • (2002) Nature , vol.418 , pp. 145-151
    • Brunet, M.1    Guy, F.2    Pilbeam, D.3    Mackaye, H.T.4    Likius, A.5
  • 5
    • 0035130163 scopus 로고    scopus 로고
    • Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
    • CHEN, F.-C., and W.-H. LI, 2001 Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68: 444-456.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 444-456
    • Chen, F.-C.1    Li, W.-H.2
  • 6
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • EDWARDS, S. V., and P. BEERLI, 2000 Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54: 1839-1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J., 1981 Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0001947091 scopus 로고    scopus 로고
    • Likelihoods on coalescents: A Monte Carlo sampling approach to inferring parameters from population samples of molecular data
    • FELSENSTEIN, J., M. KUHNER, J. YAMATO and P. BEERLI, 1999 Likelihoods on coalescents: a Monte Carlo sampling approach to inferring parameters from population samples of molecular data. IMS Lect. Notes Monogr. Ser. 33: 163-185.
    • (1999) IMS Lect. Notes Monogr. Ser. , vol.33 , pp. 163-185
    • Felsenstein, J.1    Kuhner, M.2    Yamato, J.3    Beerli, P.4
  • 9
    • 0027945629 scopus 로고
    • Estimating effective population size or mutation rate using the frequencies of mutations of various classes in a sample of DNA sequences
    • Fu, Y., 1994 Estimating effective population size or mutation rate using the frequencies of mutations of various classes in a sample of DNA sequences. Genetics 138: 1375-1386.
    • (1994) Genetics , vol.138 , pp. 1375-1386
    • Fu, Y.1
  • 10
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • GELMAN, A., and D. B. RUBIN, 1992 Inference from iterative simulation using multiple sequences (with discussion). Stat. Sci. 7: 457-511.
    • (1992) Stat. Sci. , vol.7 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 11
    • 84972539388 scopus 로고
    • Ancestral inference in population genetics
    • GRIFFITHS, R. C., and S. TAVARÉ, 1994 Ancestral inference in population genetics. Stat. Sci. 9: 307-319.
    • (1994) Stat. Sci. , vol.9 , pp. 307-319
    • Griffiths, R.C.1    Tavaré, S.2
  • 12
    • 0035500619 scopus 로고    scopus 로고
    • Genome of the apes
    • HACIA, J. G., 2001 Genome of the apes. Trends Genet. 17: 637-645.
    • (2001) Trends Genet. , vol.17 , pp. 637-645
    • Hacia, J.G.1
  • 13
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their application
    • HASTINGS, W. K., 1970 Monte Carlo sampling methods using Markov chains and their application. Biometrika 57: 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 14
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • edited by D. J. Futuyma and J. D. Antonovics. Oxford University Press, New York
    • HUDSON, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, edited by D. J. FUTUYMA and J. D. ANTONOVICS. Oxford University Press, New York.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 15
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • edited by H. N. Munro. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR, 1969 Evolution of protein molecules, pp. 21-123 in Mammalian Protein Metabolism, edited by H. N. MUNRO. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 16
    • 0035132473 scopus 로고    scopus 로고
    • Great ape DNA sequences reveal a reduced diversity and an expansion in humans
    • KAESSMANN, H., V. WIEBE, G. WEISS and S. PAABO, 2001 Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat. Genet. 27: 155-156.
    • (2001) Nat. Genet. , vol.27 , pp. 155-156
    • Kaessmann, H.1    Wiebe, V.2    Weiss, G.3    Paabo, S.4
  • 17
    • 0034924340 scopus 로고    scopus 로고
    • Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter
    • MAKOVA, K. D., M. RAMSAY, T. JENKINS and W. H. LI, 2001 Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter. Genetics 158: 1253-1268.
    • (2001) Genetics , vol.158 , pp. 1253-1268
    • Makova, K.D.1    Ramsay, M.2    Jenkins, T.3    Li, W.H.4
  • 20
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • NIELSEN, R., and J. WAKELEY, 2001 Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 21
    • 0031049003 scopus 로고    scopus 로고
    • Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets
    • RUVOLO, M., 1997 Molecular phylogeny of the hominoids: inferences from multiple independent DNA sequence data sets. Mol. Biol. Evol. 14: 248-265.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 248-265
    • Ruvolo, M.1
  • 23
    • 0034354581 scopus 로고    scopus 로고
    • Inference in molecular population genetics
    • STEPHENS, M., and P. DONNELLY, 2000 Inference in molecular population genetics (with discussions). J. R. Stat. Soc. B 62: 605-655.
    • (2000) J. R. Stat. Soc. B , vol.62 , pp. 605-655
    • Stephens, M.1    Donnelly, P.2
  • 24
    • 0001336205 scopus 로고    scopus 로고
    • Phylogeny inference
    • edited by D. M. Hillis, C. Moritz and B. K. Mable. Sinauer Associates, Sunderland, MA
    • SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL and D. M. HILLIS, 1996 Phylogeny inference, pp. 411-501 in Molecular Systematics, edited by D. M. HILLIS, C. MORITZ and B. K. MABLE. Sinauer Associates, Sunderland, MA.
    • (1996) Molecular Systematics , pp. 411-501
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 25
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 26
    • 0013272874 scopus 로고    scopus 로고
    • Pre-speciation coalescence and the effective size of ancestral populations
    • edited by M. Slatkin and M. Veuille. Oxford University Press, Oxford
    • TAKAHATA, N., and Y. SATTA, 2002 Pre-speciation coalescence and the effective size of ancestral populations, pp. 52-71 in Developments in Theoretical Population Genetics, edited by M. SLATKIN and M. VEUILLE. Oxford University Press, Oxford.
    • (2002) Developments in Theoretical Population Genetics , pp. 52-71
    • Takahata, N.1    Satta, Y.2
  • 27
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • TAKAHATA, N., Y. SATTA and J. KLEIN, 1995 Divergence time and population size in the lineage leading to modern humans. Theor. Popul. Biol. 48: 198-221.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 28
    • 0037277564 scopus 로고    scopus 로고
    • Estimating ancestral population sizes and divergence times
    • WALL, J. D., 2003 Estimating ancestral population sizes and divergence times. Genetics 163: 395-404.
    • (2003) Genetics , vol.163 , pp. 395-404
    • Wall, J.D.1
  • 29
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 30
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • WILSON, I. J., and D. J. BALDING, 1998 Genealogical inference from microsatellite data. Genetics 150: 499-510.
    • (1998) Genetics , vol.150 , pp. 499-510
    • Wilson, I.J.1    Balding, D.J.2
  • 31
    • 0037503021 scopus 로고    scopus 로고
    • Inference from DNA data: Population histories, evolutionary processes and forensic match probabilities
    • WILSON, I. J., M. E. WEAL and D. J. BALDING, 2003 Inference from DNA data: population histories, evolutionary processes and forensic match probabilities. J. R. Stat. Soc. A 166: 155-201.
    • (2003) J. R. Stat. Soc. A , vol.166 , pp. 155-201
    • Wilson, I.J.1    Weal, M.E.2    Balding, D.J.3
  • 32
    • 0026031181 scopus 로고
    • Inferences of species phylogeny in relation to segregation of ancient polymorphisms
    • WU, C.-I., 1991 Inferences of species phylogeny in relation to segregation of ancient polymorphisms. Genetics 127: 429-435.
    • (1991) Genetics , vol.127 , pp. 429-435
    • Wu, C.-I.1
  • 33
    • 0030741747 scopus 로고    scopus 로고
    • On the estimation of ancestral population sizes
    • YANG, Z., 1997 On the estimation of ancestral population sizes. Genet. Res. 69: 111-116.
    • (1997) Genet. Res. , vol.69 , pp. 111-116
    • Yang, Z.1
  • 34
    • 0033692959 scopus 로고    scopus 로고
    • Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A
    • YANG, Z., 2000 Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. J. Mol. Evol. 51: 423-432.
    • (2000) J. Mol. Evol. , vol.51 , pp. 423-432
    • Yang, Z.1
  • 35
    • 0036961518 scopus 로고    scopus 로고
    • Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci
    • YANG, Z., 2002 Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci. Genetics 162: 1811-1823.
    • (2002) Genetics , vol.162 , pp. 1811-1823
    • Yang, Z.1
  • 36
    • 0035142523 scopus 로고    scopus 로고
    • Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1
    • YU, N., Z. ZHAO, Y. X. FU, N. SAMBUUGHIN, M. RAMSAY et al., 2001 Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1. Mol. Biol. Evol. 18: 214-222.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 214-222
    • Yu, N.1    Zhao, Z.2    Fu, Y.X.3    Sambuughin, N.4    Ramsay, M.5
  • 37
    • 12944288236 scopus 로고    scopus 로고
    • Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22
    • ZHAO, Z., L. JIN, Y. X. FU, M. RAMSAY, T. JENKINS et al., 2000 Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. Proc. Natl. Acad. Sci. USA 97: 11354-11358.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 11354-11358
    • Zhao, Z.1    Jin, L.2    Fu, Y.X.3    Ramsay, M.4    Jenkins, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.