-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11:R106.
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
2
-
-
84873044090
-
Location, location, location: It's all in the timing for replication origins
-
Aparicio OM. 2013. Location, location, location: It's all in the timing for replication origins. Genes Dev 27:117-128.
-
(2013)
Genes Dev
, vol.27
, pp. 117-128
-
-
Aparicio, O.M.1
-
3
-
-
84863872155
-
Replication timing and its emergence from stochastic processes
-
Bechhoefer J, Rhind N. 2012. Replication timing and its emergence from stochastic processes. Trends Genet 28:374-381.
-
(2012)
Trends Genet
, vol.28
, pp. 374-381
-
-
Bechhoefer, J.1
Rhind, N.2
-
4
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19:185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
5
-
-
39449139672
-
Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin
-
Casey L, Patterson EE, Muller U, Fox CA. 2008. Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin. Mol Biol Cell 19:608-622.
-
(2008)
Mol Biol Cell
, vol.19
, pp. 608-622
-
-
Casey, L.1
Patterson, E.E.2
Muller, U.3
Fox, C.A.4
-
6
-
-
84922880631
-
A high-throughput ChIP-Seq for large-scale chromatin studies
-
Chabbert CD, Adjalley SH, Klaus B, Fritsch ES, Gupta I, Pelechano V, Steinmetz LM. 2015. A high-throughput ChIP-Seq for large-scale chromatin studies. Mol Syst Biol 11:777.
-
(2015)
Mol Syst Biol
, vol.11
, pp. 777
-
-
Chabbert, C.D.1
Adjalley, S.H.2
Klaus, B.3
Fritsch, E.S.4
Gupta, I.5
Pelechano, V.6
Steinmetz, L.M.7
-
7
-
-
33846576261
-
Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae
-
Chabes A, Stillman B. 2007. Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae. Proc Natl Acad Sci 104:1183-1188.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 1183-1188
-
-
Chabes, A.1
Stillman, B.2
-
8
-
-
84960414406
-
SnapShot: Origins of DNA replication
-
e411
-
Creager RL, Li Y, MacAlpine DM. 2015. SnapShot: origins of DNA replication. Cell 161:418-418 e411.
-
(2015)
Cell
, vol.161
, pp. 418
-
-
Creager, R.L.1
Li, Y.2
MacAlpine, D.M.3
-
9
-
-
0032530824
-
Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway
-
Desany BA, Alcasabas AA, Bachant JB, Elledge SJ. 1998. Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway. Genes Dev 12:2956-2970.
-
(1998)
Genes Dev
, vol.12
, pp. 2956-2970
-
-
Desany, B.A.1
Alcasabas, A.A.2
Bachant, J.B.3
Elledge, S.J.4
-
10
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova DS, Gilbert DM. 1999. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol Cell 4:983-993.
-
(1999)
Mol Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
11
-
-
84883474046
-
A cost-effective method for high-throughput construction of Illumina sequencing libraries
-
2013
-
Dunham JP, Friesen ML. 2013. A cost-effective method for high-throughput construction of Illumina sequencing libraries. Cold Spring Harb Protoc 2013:820-834.
-
(2013)
Cold Spring Harb Protoc
, pp. 820-834
-
-
Dunham, J.P.1
Friesen, M.L.2
-
13
-
-
0031265756
-
Replication profile of Saccharomyces cerevisiae chromosome VI
-
Friedman KL, Brewer BJ, Fangman WL. 1997. Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells 2:667-678.
-
(1997)
Genes Cells
, vol.2
, pp. 667-678
-
-
Friedman, K.L.1
Brewer, B.J.2
Fangman, W.L.3
-
14
-
-
0021331633
-
Copy number and the stability of 2-μm circlebased artificial plasmids of Saccharomyces cerevisiae
-
Futcher AB, Cox BS. 1984. Copy number and the stability of 2-μm circlebased artificial plasmids of Saccharomyces cerevisiae. J Bacteriol 157:283-290.
-
(1984)
J Bacteriol
, vol.157
, pp. 283-290
-
-
Futcher, A.B.1
Cox, B.S.2
-
15
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, Weissman JS. 2003. Global analysis of protein expression in yeast. Nature 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
16
-
-
34347206860
-
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
Gietz RD, Schiestl RH. 2007. High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2:31-34.
-
(2007)
Nat Protoc
, vol.2
, pp. 31-34
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
17
-
-
77956879643
-
Evaluating genome-scale approaches to eukaryotic DNA replication
-
Gilbert DM. 2010. Evaluating genome-scale approaches to eukaryotic DNA replication. Nat Rev Genet 11:673-684.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 673-684
-
-
Gilbert, D.M.1
-
18
-
-
84860548726
-
Mating-type genes and MAT switching in Saccharomyces cerevisiae
-
Haber JE. 2012. Mating-type genes and MAT switching in Saccharomyces cerevisiae. Genetics 191:33-64.
-
(2012)
Genetics
, vol.191
, pp. 33-64
-
-
Haber, J.E.1
-
19
-
-
61849184077
-
The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus
-
Hayashi MT, Takahashi TS, Nakagawa T, Nakayama J, Masukata H. 2009. The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus. Nat Cell Biol 11:357-362.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 357-362
-
-
Hayashi, M.T.1
Takahashi, T.S.2
Nakagawa, T.3
Nakayama, J.4
Masukata, H.5
-
20
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. 2013. TopHat2:accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14:R36.
-
(2013)
Genome Biol
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
21
-
-
84856103786
-
Forkhead transcription factors establish origin timing and long-range clustering in S. Cerevisiae
-
Knott SR, Peace JM, Ostrow AZ, Gan Y, Rex AE, Viggiani CJ, Tavare S, Aparicio OM. 2012. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 148:99-111.
-
(2012)
Cell
, vol.148
, pp. 99-111
-
-
Knott, S.R.1
Peace, J.M.2
Ostrow, A.Z.3
Gan, Y.4
Rex, A.E.5
Viggiani, C.J.6
Tavare, S.7
Aparicio, O.M.8
-
22
-
-
0032535478
-
Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: Requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I
-
Kobayashi T, Heck DJ, Nomura M, Horiuchi T. 1998. Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I. Genes Dev 12:3821-3830.
-
(1998)
Genes Dev
, vol.12
, pp. 3821-3830
-
-
Kobayashi, T.1
Heck, D.J.2
Nomura, M.3
Horiuchi, T.4
-
23
-
-
84895538371
-
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
-
Kulak NA, Pichler G, Paron I, Nagaraj N, Mann M. 2014. Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells. Nat Methods 11:319-324.
-
(2014)
Nat Methods
, vol.11
, pp. 319-324
-
-
Kulak, N.A.1
Pichler, G.2
Paron, I.3
Nagaraj, N.4
Mann, M.5
-
24
-
-
84875976775
-
A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan
-
Kwan EX, Foss EJ, Tsuchiyama S, Alvino GM, Kruglyak L, Kaeberlein M, Raghuraman MK, Brewer BJ, Kennedy BK, Bedalov A. 2013. A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan. PLoS Genet 9:e1003329.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003329
-
-
Kwan, E.X.1
Foss, E.J.2
Tsuchiyama, S.3
Alvino, G.M.4
Kruglyak, L.5
Kaeberlein, M.6
Raghuraman, M.K.7
Brewer, B.J.8
Kennedy, B.K.9
Bedalov, A.10
-
25
-
-
77953954908
-
How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells?
-
Labib K. 2010. How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells? Genes Dev 24:1208-1219.
-
(2010)
Genes Dev
, vol.24
, pp. 1208-1219
-
-
Labib, K.1
-
26
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
27
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
28
-
-
79551547443
-
S. Pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein: Region specific effects and replication timing in the centromere
-
Li PC, Chretien L, Cote J, Kelly TJ, Forsburg SL. 2011. S. pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein: region specific effects and replication timing in the centromere. Cell Cycle 10:323-336.
-
(2011)
Cell Cycle
, vol.10
, pp. 323-336
-
-
Li, P.C.1
Chretien, L.2
Cote, J.3
Kelly, T.J.4
Forsburg, S.L.5
-
29
-
-
84884571721
-
Fkh1 and Fkh2 associate with Sir2 to control CLB2 transcription under normal and oxidative stress conditions
-
Linke C, Klipp E, Lehrach H, Barberis M, Krobitsch S. 2013. Fkh1 and Fkh2 associate with Sir2 to control CLB2 transcription under normal and oxidative stress conditions. Front Physiol 4:173.
-
(2013)
Front Physiol
, vol.4
, pp. 173
-
-
Linke, C.1
Klipp, E.2
Lehrach, H.3
Barberis, M.4
Krobitsch, S.5
-
30
-
-
82455164158
-
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
-
Mantiero D, Mackenzie A, Donaldson A, Zegerman P. 2011. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J 30:4805-4814.
-
(2011)
EMBO J
, vol.30
, pp. 4805-4814
-
-
Mantiero, D.1
Mackenzie, A.2
Donaldson, A.3
Zegerman, P.4
-
31
-
-
0036141228
-
Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore
-
Measday V, Hailey DW, Pot I, Givan SA, Hyland KM, Cagney G, Fields S, Davis TN, Hieter P. 2002. Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore. Genes Dev 16:101-113.
-
(2002)
Genes Dev
, vol.16
, pp. 101-113
-
-
Measday, V.1
Hailey, D.W.2
Pot, I.3
Givan, S.A.4
Hyland, K.M.5
Cagney, G.6
Fields, S.7
Davis, T.N.8
Hieter, P.9
-
32
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5:621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
33
-
-
77955726795
-
Regulation of yeast forkhead transcription factors and FoxM1 by cyclin-dependent and polo-like kinases
-
Murakami H, Aiba H, Nakanishi M, Murakami-Tonami Y. 2010. Regulation of yeast forkhead transcription factors and FoxM1 by cyclin-dependent and polo-like kinases. Cell Cycle 9:3233-3242.
-
(2010)
Cell Cycle
, vol.9
, pp. 3233-3242
-
-
Murakami, H.1
Aiba, H.2
Nakanishi, M.3
Murakami-Tonami, Y.4
-
34
-
-
84878877755
-
Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment
-
Natsume T, Muller CA, Katou Y, Retkute R, Gierlinski M, Araki H, Blow JJ, Shirahige K, Nieduszynski CA, Tanaka TU. 2013. Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment. Mol Cell 50:661-674.
-
(2013)
Mol Cell
, vol.50
, pp. 661-674
-
-
Natsume, T.1
Muller, C.A.2
Katou, Y.3
Retkute, R.4
Gierlinski, M.5
Araki, H.6
Blow, J.J.7
Shirahige, K.8
Nieduszynski, C.A.9
Tanaka, T.U.10
-
35
-
-
84895091924
-
Fkh1 and Fkh2 bind multiple chromosomal elements in the S. Cerevisiae genome with distinct specificities and cell cycle dynamics
-
Ostrow AZ, Nellimoottil T, Knott SR, Fox CA, Tavare S, Aparicio OM. 2014. Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One 9:e87647.
-
(2014)
PLoS One
, vol.9
, pp. e87647
-
-
Ostrow, A.Z.1
Nellimoottil, T.2
Knott, S.R.3
Fox, C.A.4
Tavare, S.5
Aparicio, O.M.6
-
36
-
-
59449092118
-
The Hsk1 (Cdc7) replication kinase regulates origin efficiency
-
Patel PK, Kommajosyula N, Rosebrock A, Bensimon A, Leatherwood J, Bechhoefer J, Rhind N. 2008. The Hsk1 (Cdc7) replication kinase regulates origin efficiency. Mol Biol Cell 19:5550-5558.
-
(2008)
Mol Biol Cell
, vol.19
, pp. 5550-5558
-
-
Patel, P.K.1
Kommajosyula, N.2
Rosebrock, A.3
Bensimon, A.4
Leatherwood, J.5
Bechhoefer, J.6
Rhind, N.7
-
37
-
-
84902350415
-
Rif1 regulates initiation timing of late replication origins throughout the S. Cerevisiae genome
-
Peace JM, Ter-Zakarian A, Aparicio OM. 2014. Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome. PLoS One 9:e98501.
-
(2014)
PLoS One
, vol.9
, pp. e98501
-
-
Peace, J.M.1
Ter-Zakarian, A.2
Aparicio, O.M.3
-
38
-
-
84859230772
-
The yeast forkhead transcription factors fkh1 and fkh2 regulate lifespan and stress response together with the anaphase-promoting complex
-
Postnikoff SD, Malo ME, Wong B, Harkness TA. 2012. The yeast forkhead transcription factors fkh1 and fkh2 regulate lifespan and stress response together with the anaphase-promoting complex. PLoS Genet 8:e1002583.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002583
-
-
Postnikoff, S.D.1
Malo, M.E.2
Wong, B.3
Harkness, T.A.4
-
39
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
40
-
-
0031005357
-
Cell cycle-dependent establishment of a late replication program
-
Raghuraman MK, Brewer BJ, Fangman WL. 1997. Cell cycle-dependent establishment of a late replication program. Science 276:806-809.
-
(1997)
Science
, vol.276
, pp. 806-809
-
-
Raghuraman, M.K.1
Brewer, B.J.2
Fangman, W.L.3
-
41
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. 2001. Replication dynamics of the yeast genome. Science 294:115-121.
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
43
-
-
0033568196
-
Activation of dormant origins of DNA replication in budding yeast
-
Santocanale C, Sharma K, Diffley JF. 1999. Activation of dormant origins of DNA replication in budding yeast. Genes Dev 13:2360-2364.
-
(1999)
Genes Dev
, vol.13
, pp. 2360-2364
-
-
Santocanale, C.1
Sharma, K.2
Diffley, J.F.3
-
44
-
-
40549108563
-
Cell cycle regulation of DNA replication
-
Sclafani RA, Holzen TM. 2007. Cell cycle regulation of DNA replication. Annu Rev Genet 41:237-280.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 237-280
-
-
Sclafani, R.A.1
Holzen, T.M.2
-
45
-
-
0028966452
-
Human SEC13Rp functionsin yeast and is located on transport vesicles budding from the endoplasmic reticulum
-
Shaywitz DA, Orci L, Ravazzola M, Swaroop A, Kaiser CA. 1995. Human SEC13Rp functionsin yeast and is located on transport vesicles budding from the endoplasmic reticulum. J Cell Biol 128:769-777.
-
(1995)
J Cell Biol
, vol.128
, pp. 769-777
-
-
Shaywitz, D.A.1
Orci, L.2
Ravazzola, M.3
Swaroop, A.4
Kaiser, C.A.5
-
46
-
-
34147194965
-
The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2
-
Sherriff JA, Kent NA, Mellor J. 2007. The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2. Mol Cell Biol 27:2848-2860.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 2848-2860
-
-
Sherriff, J.A.1
Kent, N.A.2
Mellor, J.3
-
47
-
-
84907470240
-
Chromatin structure and replication origins: Determinants of chromosome replication and nuclear organization
-
Smith OK, Aladjem MI. 2014. Chromatin structure and replication origins: determinants of chromosome replication and nuclear organization. J Mol Biol 426:3330-3341.
-
(2014)
J Mol Biol
, vol.426
, pp. 3330-3341
-
-
Smith, O.K.1
Aladjem, M.I.2
-
48
-
-
84903169287
-
-
University of Cambridge, Cancer Research UK-Cambridge Institute
-
Stark R, Brown R. 2013. DiffBind: differential binding analysis of ChIP-Seq peak data. bioconductor.org, University of Cambridge, Cancer Research UK-Cambridge Institute. http://bioconductor.org/packages/release/bioc/vignettes/DiffBind/inst/doc/DiffBind.pdf.
-
(2013)
DiffBind: Differential Binding Analysis of ChIP-seq Peak Data
-
-
Stark, R.1
Brown, R.2
-
49
-
-
84155171119
-
Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing
-
Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H. 2011. Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr Biol 21:2055-2063.
-
(2011)
Curr Biol
, vol.21
, pp. 2055-2063
-
-
Tanaka, S.1
Nakato, R.2
Katou, Y.3
Shirahige, K.4
Araki, H.5
-
50
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, Van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28:511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
51
-
-
36849091351
-
Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals
-
Veis J, Klug H, Koranda M, Ammerer G. 2007. Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals. Mol Cell Biol 27:8364-8373.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 8364-8373
-
-
Veis, J.1
Klug, H.2
Koranda, M.3
Ammerer, G.4
-
52
-
-
33751578231
-
New vectors for simplified construction of BrdU-Incorporating strains of Saccharomyces cerevisiae
-
Viggiani CJ, Aparicio OM. 2006. New vectors for simplified construction of BrdU-Incorporating strains of Saccharomyces cerevisiae. Yeast 23:1045-1051.
-
(2006)
Yeast
, vol.23
, pp. 1045-1051
-
-
Viggiani, C.J.1
Aparicio, O.M.2
-
53
-
-
77956272541
-
Genome-wide analysis of DNA synthesis by BrdU immunoprecipitation on tiling microarrays (BrdU-IP-chip) in Saccharomyces cerevisiae
-
Viggiani CJ, Knott SR, Aparicio OM. 2010. Genome-wide analysis of DNA synthesis by BrdU immunoprecipitation on tiling microarrays (BrdU-IP-chip) in Saccharomyces cerevisiae. Cold Spring Harb Protoc 2010: pdb. prot5385.
-
(2010)
Cold Spring Harb Protoc
, vol.2010
-
-
Viggiani, C.J.1
Knott, S.R.2
Aparicio, O.M.3
-
54
-
-
35348860237
-
Forkhead proteins control the outcome of transcription factor binding by antiactivation
-
Voth WP, Yu Y, Takahata S, Kretschmann KL, Lieb JD, Parker RL, Milash B, Stillman DJ. 2007. Forkhead proteins control the outcome of transcription factor binding by antiactivation. EMBO J 26:4324-4334.
-
(2007)
EMBO J
, vol.26
, pp. 4324-4334
-
-
Voth, W.P.1
Yu, Y.2
Takahata, S.3
Kretschmann, K.L.4
Lieb, J.D.5
Parker, R.L.6
Milash, B.7
Stillman, D.J.8
-
55
-
-
61349201535
-
Establishing the program of origin firing during S phase in fission yeast
-
Wu PY, Nurse P. 2009. Establishing the program of origin firing during S phase in fission yeast. Cell 136:852-864.
-
(2009)
Cell
, vol.136
, pp. 852-864
-
-
Wu, P.Y.1
Nurse, P.2
-
56
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. Cerevisiae: High-resolution mapping of replication origins
-
Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM. 2001. Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294:2357-2360.
-
(2001)
Science
, vol.294
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
57
-
-
0031261584
-
The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI
-
Yamashita M, Hori Y, Shinomiya T, Obuse C, Tsurimoto T, Yoshikawa H, Shirahige K. 1997. The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI. Genes Cells 2:655-665.
-
(1997)
Genes Cells
, vol.2
, pp. 655-665
-
-
Yamashita, M.1
Hori, Y.2
Shinomiya, T.3
Obuse, C.4
Tsurimoto, T.5
Yoshikawa, H.6
Shirahige, K.7
-
58
-
-
77956253770
-
Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing
-
Yang SC, Rhind N, Bechhoefer J. 2010. Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing. Mol Syst Biol 6:404.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 404
-
-
Yang, S.C.1
Rhind, N.2
Bechhoefer, J.3
-
59
-
-
84900989853
-
The histone deacetylases Sir2 and Rpd3 act on ribosomal DNA to control the replication program in budding yeast
-
Yoshida K, Bacal J, Desmarais D, Padioleau I, Tsaponina O, Chabes A, Pantesco V, Dubois E, Parrinello H, Skrzypczak M, et al. 2014. The histone deacetylases Sir2 and Rpd3 act on ribosomal DNA to control the replication program in budding yeast. Mol Cell 54:691-697.
-
(2014)
Mol Cell
, vol.54
, pp. 691-697
-
-
Yoshida, K.1
Bacal, J.2
Desmarais, D.3
Padioleau, I.4
Tsaponina, O.5
Chabes, A.6
Pantesco, V.7
Dubois, E.8
Parrinello, H.9
Skrzypczak, M.10
-
60
-
-
0018291839
-
Replication of each copy of the yeast 2 micron DNA plasmid occurs during the S phase
-
Zakian VA, Brewer BJ, Fangman WL. 1979. Replication of each copy of the yeast 2 micron DNA plasmid occurs during the S phase. Cell 17:923-934.
-
(1979)
Cell
, vol.17
, pp. 923-934
-
-
Zakian, V.A.1
Brewer, B.J.2
Fangman, W.L.3
-
61
-
-
0037188889
-
Noc3p, a bHLH protein, plays an integral role in the initiation of DNA replication in budding yeast
-
Zhang Y, Yu Z, Fu X, Liang C. 2002. Noc3p, a bHLH protein, plays an integral role in the initiation of DNA replication in budding yeast. Cell 109:849-860.
-
(2002)
Cell
, vol.109
, pp. 849-860
-
-
Zhang, Y.1
Yu, Z.2
Fu, X.3
Liang, C.4
-
62
-
-
53849146020
-
Model-based Analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model-based Analysis of ChIP-Seq (MACS). Genome Biol 9:R137.
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
63
-
-
84878662645
-
The level of origin firing inversely affects the rate of replication fork progression
-
Zhong Y, Nellimoottil T, Peace JM, Knott SR, Villwock SK, Yee JM, Jancuska JM, Rege S, Tecklenburg M, Sclafani RA, et al. 2013. The level of origin firing inversely affects the rate of replication fork progression. J Cell Biol 201:373-383.
-
(2013)
J Cell Biol
, vol.201
, pp. 373-383
-
-
Zhong, Y.1
Nellimoottil, T.2
Peace, J.M.3
Knott, S.R.4
Villwock, S.K.5
Yee, J.M.6
Jancuska, J.M.7
Rege, S.8
Tecklenburg, M.9
Sclafani, R.A.10
|