메뉴 건너뛰기




Volumn 17, Issue 1, 2016, Pages

Post-weaning blood transcriptomic differences between yorkshire pigs divergently selected for residual feed intake

Author keywords

Blood transcriptome; Feed efficiency; Residual feed intake; RNA seq; Sus scrofa

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; TRANSCRIPTOME;

EID: 84960131548     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-016-2395-x     Document Type: Article
Times cited : (26)

References (85)
  • 1
    • 84887011860 scopus 로고    scopus 로고
    • Special topics--Mitigation of methane and nitrous oxide emissions from animal operations: III. A review of animal management mitigation options
    • Hristov AN, Ott T, Tricarico J, Rotz A, Waghorn G, Adesogan A, et al. Special topics--Mitigation of methane and nitrous oxide emissions from animal operations: III. A review of animal management mitigation options. J Anim Sci. 2013;91(11):5095-113.
    • (2013) J Anim Sci , vol.91 , Issue.11 , pp. 5095-5113
    • Hristov, A.N.1    Ott, T.2    Tricarico, J.3    Rotz, A.4    Waghorn, G.5    Adesogan, A.6
  • 2
    • 84960190066 scopus 로고    scopus 로고
    • National program of swine feed efficiency
    • Accessed 21 Jan
    • National program of swine feed efficiency [ http://www.swinefeedefficiency.com/project.html ]. Accessed 21 Jan. 2016.
    • (2016)
  • 5
    • 37049029612 scopus 로고    scopus 로고
    • Genetic parameters for residual feed intake in growing pigs, with emphasis on genetic relationships with carcass and meat quality traits
    • Gilbert H, Bidanel JP, Gruand J, Caritez JC, Billon Y, Guillouet P, et al. Genetic parameters for residual feed intake in growing pigs, with emphasis on genetic relationships with carcass and meat quality traits. J Anim Sci. 2007;85(12):3182-8.
    • (2007) J Anim Sci , vol.85 , Issue.12 , pp. 3182-3188
    • Gilbert, H.1    Bidanel, J.P.2    Gruand, J.3    Caritez, J.C.4    Billon, Y.5    Guillouet, P.6
  • 6
    • 38949149635 scopus 로고    scopus 로고
    • Selection response and genetic parameters for residual feed intake in Yorkshire swine
    • Cai W, Casey DS, Dekkers JC. Selection response and genetic parameters for residual feed intake in Yorkshire swine. J Anim Sci. 2008;86(2):287-98.
    • (2008) J Anim Sci , vol.86 , Issue.2 , pp. 287-298
    • Cai, W.1    Casey, D.S.2    Dekkers, J.C.3
  • 8
    • 84957944410 scopus 로고    scopus 로고
    • The genetic and biological basis of residual feed intake as a measure of feed efficiency
    • Netherland: Wageningen Academic Publishers
    • Young JM, Dekkers JCM. The genetic and biological basis of residual feed intake as a measure of feed efficiency. In: Patience JF, editor. Feed efficiency in swine. Netherland: Wageningen Academic Publishers; 2012.
    • (2012) In: Patience JF, editor. Feed efficiency in swine
    • Young, J.M.1    Dekkers, J.C.M.2
  • 9
    • 79959525266 scopus 로고    scopus 로고
    • Effect of selection for residual feed intake on feeding behavior and daily feed intake patterns in Yorkshire swine
    • Young JM, Cai W, Dekkers JC. Effect of selection for residual feed intake on feeding behavior and daily feed intake patterns in Yorkshire swine. J Anim Sci. 2011;89(3):639-47.
    • (2011) J Anim Sci , vol.89 , Issue.3 , pp. 639-647
    • Young, J.M.1    Cai, W.2    Dekkers, J.C.3
  • 10
    • 77952801394 scopus 로고    scopus 로고
    • Selection to reduce residual feed intake in pigs produces a correlated response in juvenile insulin-like growth factor-I concentration
    • Bunter KL, Cai W, Johnston DJ, Dekkers JC. Selection to reduce residual feed intake in pigs produces a correlated response in juvenile insulin-like growth factor-I concentration. J Anim Sci. 2010;88(6):1973-81.
    • (2010) J Anim Sci , vol.88 , Issue.6 , pp. 1973-1981
    • Bunter, K.L.1    Cai, W.2    Johnston, D.J.3    Dekkers, J.C.4
  • 11
    • 0033159361 scopus 로고    scopus 로고
    • Genetic parameters for production traits and measures of residual feed intake in large white swine
    • Johnson ZB, Chewning JJ, Nugent 3rd RA. Genetic parameters for production traits and measures of residual feed intake in large white swine. J Anim Sci. 1999;77(7):1679-85.
    • (1999) J Anim Sci , vol.77 , Issue.7 , pp. 1679-1685
    • Johnson, Z.B.1    Chewning, J.J.2    Nugent, R.A.3
  • 12
    • 80053121147 scopus 로고    scopus 로고
    • Effects of ad libitum and restricted feeding on early production performance and body composition of Yorkshire pigs selected for reduced residual feed intake
    • Boddicker N, Gabler NK, Spurlock ME, Nettleton D, Dekkers JC. Effects of ad libitum and restricted feeding on early production performance and body composition of Yorkshire pigs selected for reduced residual feed intake. Animal. 2011;5(9):1344-53.
    • (2011) Animal , vol.5 , Issue.9 , pp. 1344-1353
    • Boddicker, N.1    Gabler, N.K.2    Spurlock, M.E.3    Nettleton, D.4    Dekkers, J.C.5
  • 13
    • 84882573456 scopus 로고    scopus 로고
    • Evidence of decreased muscle protein turnover in gilts selected for low residual feed intake
    • Cruzen SM, Harris AJ, Hollinger K, Punt RM, Grubbs JK, Selsby JT, et al. Evidence of decreased muscle protein turnover in gilts selected for low residual feed intake. J Anim Sci. 2013;91(8):4007-16.
    • (2013) J Anim Sci , vol.91 , Issue.8 , pp. 4007-4016
    • Cruzen, S.M.1    Harris, A.J.2    Hollinger, K.3    Punt, R.M.4    Grubbs, J.K.5    Selsby, J.T.6
  • 15
    • 84899912826 scopus 로고    scopus 로고
    • Liver and skeletal muscle mitochondria proteomes are altered in pigs divergently selected for residual feed intake
    • Grubbs JK, Huff-Lonergan E, Gabler NK, M Dekkers JC, Lonergan SM. Liver and skeletal muscle mitochondria proteomes are altered in pigs divergently selected for residual feed intake. J Anim Sci. 2014;92(5):1995-2007.
    • (2014) J Anim Sci , vol.92 , Issue.5 , pp. 1995-2007
    • Grubbs, J.K.1    Huff-Lonergan, E.2    Gabler, N.K.3    Dekkers, M.J.C.4    Lonergan, S.M.5
  • 16
    • 84882685825 scopus 로고    scopus 로고
    • Divergent genetic selection for residual feed intake impacts mitochondria reactive oxygen species production in pigs
    • Grubbs JK, Fritchen AN, Huff-Lonergan E, Dekkers JC, Gabler NK, Lonergan SM. Divergent genetic selection for residual feed intake impacts mitochondria reactive oxygen species production in pigs. J Anim Sci. 2013;91(5):2133-40.
    • (2013) J Anim Sci , vol.91 , Issue.5 , pp. 2133-2140
    • Grubbs, J.K.1    Fritchen, A.N.2    Huff-Lonergan, E.3    Dekkers, J.C.4    Gabler, N.K.5    Lonergan, S.M.6
  • 17
    • 70349664037 scopus 로고    scopus 로고
    • Genetic associations of residual feed intake with serum insulin-like growth factor-I and leptin concentrations, meat quality, and carcass cross sectional fat area ratios in Duroc pigs
    • Hoque MA, Katoh K, Suzuki K. Genetic associations of residual feed intake with serum insulin-like growth factor-I and leptin concentrations, meat quality, and carcass cross sectional fat area ratios in Duroc pigs. J Anim Sci. 2009;87(10):3069-75.
    • (2009) J Anim Sci , vol.87 , Issue.10 , pp. 3069-3075
    • Hoque, M.A.1    Katoh, K.2    Suzuki, K.3
  • 18
    • 79960991407 scopus 로고    scopus 로고
    • Muscle characteristics and meat quality traits are affected by divergent selection on residual feed intake in pigs
    • Lefaucheur L, Lebret B, Ecolan P, Louveau I, Damon M, Prunier A, et al. Muscle characteristics and meat quality traits are affected by divergent selection on residual feed intake in pigs. J Anim Sci. 2011;89(4):996-1010.
    • (2011) J Anim Sci , vol.89 , Issue.4 , pp. 996-1010
    • Lefaucheur, L.1    Lebret, B.2    Ecolan, P.3    Louveau, I.4    Damon, M.5    Prunier, A.6
  • 20
    • 84905009876 scopus 로고    scopus 로고
    • Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: II. Genomewide association
    • Jiao S, Maltecca C, Gray KA, Cassady JP. Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: II. Genomewide association. J Anim Sci. 2014;92(7):2846-60.
    • (2014) J Anim Sci , vol.92 , Issue.7 , pp. 2846-2860
    • Jiao, S.1    Maltecca, C.2    Gray, K.A.3    Cassady, J.P.4
  • 21
    • 84894280861 scopus 로고    scopus 로고
    • Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs
    • Do DN, Ostersen T, Strathe AB, Mark T, Jensen J, Kadarmideen HN. Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs. BMC Genet. 2014;15:27.
    • (2014) BMC Genet , vol.15 , pp. 27
    • Do, D.N.1    Ostersen, T.2    Strathe, A.B.3    Mark, T.4    Jensen, J.5    Kadarmideen, H.N.6
  • 22
    • 84906252394 scopus 로고    scopus 로고
    • Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake
    • Do DN, Strathe AB, Ostersen T, Pant SD, Kadarmideen HN. Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake. Front Genet. 2014;5:307.
    • (2014) Front Genet , vol.5 , pp. 307
    • Do, D.N.1    Strathe, A.B.2    Ostersen, T.3    Pant, S.D.4    Kadarmideen, H.N.5
  • 23
    • 75449104615 scopus 로고    scopus 로고
    • Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency
    • Lkhagvadorj S, Qu L, Cai W, Couture OP, Barb CR, Hausman GJ, et al. Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency. Am J Physiol Regul Integr Comp Physiol. 2010;298(2):R494-507.
    • (2010) Am J Physiol Regul Integr Comp Physiol , vol.298 , Issue.2 , pp. R494-507
    • Lkhagvadorj, S.1    Qu, L.2    Cai, W.3    Couture, O.P.4    Barb, C.R.5    Hausman, G.J.6
  • 24
    • 84991227631 scopus 로고    scopus 로고
    • Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle
    • Vincent A, Louveau I, Gondret F, Trefeu C, Gilbert H, Lefaucheur L. Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle. J Anim Sci. 2015;93(6):2745-58.
    • (2015) J Anim Sci , vol.93 , Issue.6 , pp. 2745-2758
    • Vincent, A.1    Louveau, I.2    Gondret, F.3    Trefeu, C.4    Gilbert, H.5    Lefaucheur, L.6
  • 25
    • 84936802473 scopus 로고    scopus 로고
    • Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs
    • Jing L, Hou Y, Wu H, Miao Y, Li X, Cao J, et al. Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. Sci Rep. 2015;5.
    • (2015) Sci Rep. , vol.5
    • Jing, L.1    Hou, Y.2    Wu, H.3    Miao, Y.4    Li, X.5    Cao, J.6
  • 26
    • 84861819731 scopus 로고    scopus 로고
    • Using genes differentially expressed in bulls to classify steers divergently selected for high and low residual feed intake
    • Chen Y, Arthur PF, Herd RM, Quinn K, Barchia IM. Using genes differentially expressed in bulls to classify steers divergently selected for high and low residual feed intake. Anim Prod Sci. 2012;52(7):608-12.
    • (2012) Anim Prod Sci , vol.52 , Issue.7 , pp. 608-612
    • Chen, Y.1    Arthur, P.F.2    Herd, R.M.3    Quinn, K.4    Barchia, I.M.5
  • 28
    • 35248840944 scopus 로고    scopus 로고
    • The peripheral-blood transcriptome: new insights into disease and risk assessment
    • Mohr S, Liew CC. The peripheral-blood transcriptome: new insights into disease and risk assessment. Trends Mol Med. 2007;13(10):422-32.
    • (2007) Trends Mol Med , vol.13 , Issue.10 , pp. 422-432
    • Mohr, S.1    Liew, C.C.2
  • 29
    • 84928703581 scopus 로고    scopus 로고
    • Assessment of immune status using blood transcriptomics and potential implications for global health
    • Chaussabel D. Assessment of immune status using blood transcriptomics and potential implications for global health. Semin Immunol. 2015;27(1):58-66.
    • (2015) Semin Immunol , vol.27 , Issue.1 , pp. 58-66
    • Chaussabel, D.1
  • 30
    • 84881308301 scopus 로고    scopus 로고
    • Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks
    • Stevens A, Hanson D, Whatmore A, Destenaves B, Chatelain P, Clayton P. Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks. BMC Genomics. 2013;14(1):547.
    • (2013) BMC Genomics , vol.14 , Issue.1 , pp. 547
    • Stevens, A.1    Hanson, D.2    Whatmore, A.3    Destenaves, B.4    Chatelain, P.5    Clayton, P.6
  • 31
    • 43249127214 scopus 로고    scopus 로고
    • A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs
    • Idaghdour Y, Storey JD, Jadallah SJ, Gibson G. A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs. PLoS Genet. 2008;4(4):e1000052.
    • (2008) PLoS Genet , vol.4 , Issue.4
    • Idaghdour, Y.1    Storey, J.D.2    Jadallah, S.J.3    Gibson, G.4
  • 32
    • 84873701002 scopus 로고    scopus 로고
    • Associations between dietary patterns and gene expression profiles of healthy men and women: a cross-sectional study
    • Bouchard-Mercier A, Paradis A-M, Rudkowska I, Lemieux S, Couture P, Vohl M-C. Associations between dietary patterns and gene expression profiles of healthy men and women: a cross-sectional study. Nutr J. 2013;12(1):24.
    • (2013) Nutr J , vol.12 , Issue.1 , pp. 24
    • Bouchard-Mercier, A.1    Paradis, A.-M.2    Rudkowska, I.3    Lemieux, S.4    Couture, P.5    Vohl, M.-C.6
  • 33
    • 0031864895 scopus 로고    scopus 로고
    • Insulin-like growth factor (IGF)-I but not IGF-II promotes lean growth and feed efficiency in broiler chickens
    • Tomas FM, Pym RA, McMurtry JP, Francis GL. Insulin-like growth factor (IGF)-I but not IGF-II promotes lean growth and feed efficiency in broiler chickens. Gen Comp Endocrinol. 1998;110(3):262-75.
    • (1998) Gen Comp Endocrinol , vol.110 , Issue.3 , pp. 262-275
    • Tomas, F.M.1    Pym, R.A.2    McMurtry, J.P.3    Francis, G.L.4
  • 34
    • 85047688289 scopus 로고    scopus 로고
    • Association of SNP of neuropeptide Y, leptin, and IGF-1 genes with residual feed intake in confinement and under grazing condition in Angus cattle
    • Trujillo AI, Casal A, Penagaricano F, Carriquiry M, Chilibroste P. Association of SNP of neuropeptide Y, leptin, and IGF-1 genes with residual feed intake in confinement and under grazing condition in Angus cattle. J Anim Sci. 2013;91(9):4235-44.
    • (2013) J Anim Sci , vol.91 , Issue.9 , pp. 4235-4244
    • Trujillo, A.I.1    Casal, A.2    Penagaricano, F.3    Carriquiry, M.4    Chilibroste, P.5
  • 35
    • 84973358375 scopus 로고    scopus 로고
    • Assessing peripheral blood cell profile of Yorkshire pigs divergently selected for residual feed intake
    • Mpetile Z, Young JM, Gabler NK, Dekkers JC, Tuggle CK. Assessing peripheral blood cell profile of Yorkshire pigs divergently selected for residual feed intake. J Anim Sci. 2015;93(3):892-9.
    • (2015) J Anim Sci , vol.93 , Issue.3 , pp. 892-899
    • Mpetile, Z.1    Young, J.M.2    Gabler, N.K.3    Dekkers, J.C.4    Tuggle, C.K.5
  • 36
    • 0036452738 scopus 로고    scopus 로고
    • Blood cell profiles of steer progeny from parents selected for and against residual feed intake
    • Richardson EC, Herd RM, Colditz IG, Archer JA, Arthur PF. Blood cell profiles of steer progeny from parents selected for and against residual feed intake. Aust J Exp Agric. 2002;42(7):901-8.
    • (2002) Aust J Exp Agric , vol.42 , Issue.7 , pp. 901-908
    • Richardson, E.C.1    Herd, R.M.2    Colditz, I.G.3    Archer, J.A.4    Arthur, P.F.5
  • 38
    • 84973334458 scopus 로고    scopus 로고
    • Composition and quality characteristics of carcasses from pigs divergently selected for residual feed intake on high- or low-energy diets
    • Arkfeld EK, Young JM, Johnson RC, Fedler CA, Prusa K, Patience JF, et al. Composition and quality characteristics of carcasses from pigs divergently selected for residual feed intake on high- or low-energy diets. J Anim Sci. 2015;93(5):2530-45.
    • (2015) J Anim Sci , vol.93 , Issue.5 , pp. 2530-2545
    • Arkfeld, E.K.1    Young, J.M.2    Johnson, R.C.3    Fedler, C.A.4    Prusa, K.5    Patience, J.F.6
  • 40
    • 84920836456 scopus 로고    scopus 로고
    • Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples
    • Choi I, Bao H, Kommadath A, Hosseini A, Sun X, Meng Y, et al. Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. BMC Genomics. 2014;15(1):954.
    • (2014) BMC Genomics , vol.15 , Issue.1 , pp. 954
    • Choi, I.1    Bao, H.2    Kommadath, A.3    Hosseini, A.4    Sun, X.5    Meng, Y.6
  • 41
    • 84960190071 scopus 로고    scopus 로고
    • Accessed 21 Jan
    • FASTQC [ http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ]. Accessed 21 Jan. 2016.
    • (2016)
  • 42
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: a flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114-20.
    • (2014) Bioinformatics , vol.30 , Issue.15 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 45
    • 84897397058 scopus 로고    scopus 로고
    • featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
    • Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2014;30(7):923-30.
    • (2014) Bioinformatics , vol.30 , Issue.7 , pp. 923-930
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3
  • 46
    • 84879198972 scopus 로고    scopus 로고
    • Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
    • Lund SP, Nettleton D, McCarthy DJ, Smyth GK: Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates. Stat Appl Genet Mol Biol 2012, 11(5).Article 8.
    • (2012) Stat Appl Genet Mol Biol , vol.11 , Issue.5
    • Lund, S.P.1    Nettleton, D.2    McCarthy, D.J.3    Smyth, G.K.4
  • 47
    • 84949100930 scopus 로고    scopus 로고
    • Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates
    • Nguyen Y, Nettleton D, Liu H, Tuggle C. Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates. J Agric Biol Environ Stat. 2015; 20(4):577-597.
    • (2015) J Agric Biol Environ Stat , vol.20 , Issue.4 , pp. 577-597
    • Nguyen, Y.1    Nettleton, D.2    Liu, H.3    Tuggle, C.4
  • 48
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 49
    • 84896735766 scopus 로고    scopus 로고
    • voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
    • Law CW, Chen Y, Shi W, Smyth GK. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014;15(2):R29.
    • (2014) Genome Biol , vol.15 , Issue.2 , pp. R29
    • Law, C.W.1    Chen, Y.2    Shi, W.3    Smyth, G.K.4
  • 50
    • 84926507971 scopus 로고    scopus 로고
    • limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47.
    • (2015) Nucleic Acids Res , vol.43 , Issue.7 , pp. e47
    • Ritchie, M.E.1    Phipson, B.2    Wu, D.3    Hu, Y.4    Law, C.W.5    Shi, W.6
  • 51
    • 84960190072 scopus 로고    scopus 로고
    • Accessed 21 Jan
    • WGCNA tutorials [ http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/ ].Accessed 21 Jan. 2016.
    • (2016)
  • 53
    • 84877083078 scopus 로고    scopus 로고
    • IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis
    • Zhang F, Drabier R. IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis. BMC Bioinformatics. 2012;13 Suppl 15:S7.
    • (2012) BMC Bioinformatics , vol.13 , pp. S7
    • Zhang, F.1    Drabier, R.2
  • 54
    • 84960190074 scopus 로고    scopus 로고
    • Accessed 21 Jan
    • IPAD [ http://bioinfo.hsc.unt.edu/ipad/index.html ].Accessed 21 Jan. 2016.
    • (2016)
  • 55
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Ser B Methodol. 1995;57(1):289-300.
    • (1995) J R Stat Soc Ser B Methodol , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 56
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28(5):511-5.
    • (2010) Nat Biotechnol , vol.28 , Issue.5 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    Baren, M.J.6
  • 57
    • 84927722380 scopus 로고    scopus 로고
    • How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments
    • Svec D, Tichopad A, Novosadova V, Pfaffl MW, Kubista M. How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments. Biomol Detect Quantification. 2015;3:9-16.
    • (2015) Biomol Detect Quantification , vol.3 , pp. 9-16
    • Svec, D.1    Tichopad, A.2    Novosadova, V.3    Pfaffl, M.W.4    Kubista, M.5
  • 58
    • 85031962960 scopus 로고    scopus 로고
    • Fluidigm User Guide for Real-Time PCR Analysis
    • Fluidigm User Guide for Real-Time PCR Analysis [ https://www.fluidigm.com/binaries/content/documents/fluidigm/resources/real-time-pcr-analysis-ug-68000088/real-time-pcr-analysis-ug-68000088/fluidigm%3Afile ]
  • 59
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2DeltaDeltaCt method
    • Livak K, Schmittgen T. Analysis of relative gene expression data using real-time quantitative PCR and the 2DeltaDeltaCt method. Methods. 2001;25(4):402-8.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.1    Schmittgen, T.2
  • 60
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002;3(7):research0034.0031-11.
    • (2002) Genome Biol , vol.3 , Issue.7 , pp. 11-31
    • Vandesompele, J.1    Preter, K.2    Pattyn, F.3    Poppe, B.4    Roy, N.5    Paepe, A.6
  • 61
    • 84912527013 scopus 로고    scopus 로고
    • The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
    • Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, et al. The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. Nat Biotech. 2014;32(9):926-32.
    • (2014) Nat Biotech , vol.32 , Issue.9 , pp. 926-932
    • Wang, C.1    Gong, B.2    Bushel, P.R.3    Thierry-Mieg, J.4    Thierry-Mieg, D.5    Xu, J.6
  • 62
    • 84925969785 scopus 로고    scopus 로고
    • Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes
    • Tizioto PC, Coutinho LL, Decker JE, Schnabel RD, Rosa KO, Oliveira PS, et al. Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes. BMC Genomics. 2015;16:242.
    • (2015) BMC Genomics , vol.16 , pp. 242
    • Tizioto, P.C.1    Coutinho, L.L.2    Decker, J.E.3    Schnabel, R.D.4    Rosa, K.O.5    Oliveira, P.S.6
  • 63
    • 80052743566 scopus 로고    scopus 로고
    • Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake
    • Chen Y, Gondro C, Quinn K, Herd RM, Parnell PF, Vanselow B. Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake. Anim Genet. 2011;42(5):475-90.
    • (2011) Anim Genet , vol.42 , Issue.5 , pp. 475-490
    • Chen, Y.1    Gondro, C.2    Quinn, K.3    Herd, R.M.4    Parnell, P.F.5    Vanselow, B.6
  • 64
    • 84941997378 scopus 로고    scopus 로고
    • Transcriptomic analysis to elucidate the molecular mechanisms that underlie feed efficiency in meat-type chickens
    • Lee J, Karnuah AB, Rekaya R, Anthony NB, Aggrey SE. Transcriptomic analysis to elucidate the molecular mechanisms that underlie feed efficiency in meat-type chickens. Mol Genet Genomics. 2015;290(5):1673-82.
    • (2015) Mol Genet Genomics , vol.290 , Issue.5 , pp. 1673-1682
    • Lee, J.1    Karnuah, A.B.2    Rekaya, R.3    Anthony, N.B.4    Aggrey, S.E.5
  • 65
    • 84876221128 scopus 로고    scopus 로고
    • Cell Biology Symposium: feed efficiency: mitochondrial function to global gene expression
    • Bottje W, Kong BW. Cell Biology Symposium: feed efficiency: mitochondrial function to global gene expression. J Anim Sci. 2013;91(4):1582-93.
    • (2013) J Anim Sci , vol.91 , Issue.4 , pp. 1582-1593
    • Bottje, W.1    Kong, B.W.2
  • 68
    • 0035816653 scopus 로고    scopus 로고
    • Regulation of the Human MAT2B Gene Encoding the Regulatory β Subunit of Methionine Adenosyltransferase, MAT II
    • LeGros L, Halim A-B, Chamberlin ME, Geller A, Kotb M. Regulation of the Human MAT2B Gene Encoding the Regulatory β Subunit of Methionine Adenosyltransferase, MAT II. J Biol Chem. 2001;276(27):24918-24.
    • (2001) J Biol Chem , vol.276 , Issue.27 , pp. 24918-24924
    • LeGros, L.1    Halim, A.-B.2    Chamberlin, M.E.3    Geller, A.4    Kotb, M.5
  • 69
    • 84855464684 scopus 로고    scopus 로고
    • Investigation of the relationship between SLA-1 and SLA-3 gene expression and susceptibility to Escherichia coli F18 in post-weaning pigs
    • Ye L, Zi C, Pan ZY, Zhu J, Du ZD, Zhu GQ, et al. Investigation of the relationship between SLA-1 and SLA-3 gene expression and susceptibility to Escherichia coli F18 in post-weaning pigs. Comp Immunol Microbiol Infect Dis. 2012;35(1):23-30.
    • (2012) Comp Immunol Microbiol Infect Dis , vol.35 , Issue.1 , pp. 23-30
    • Ye, L.1    Zi, C.2    Pan, Z.Y.3    Zhu, J.4    Du, Z.D.5    Zhu, G.Q.6
  • 70
    • 0033598171 scopus 로고    scopus 로고
    • Nucleotide binding by TAP mediates association with peptide and release of assembled MHC class I molecules
    • Knittler MR, Alberts P, Deverson EV, Howard JC. Nucleotide binding by TAP mediates association with peptide and release of assembled MHC class I molecules. Curr Biol. 1999;9(18):999-S991.
    • (1999) Curr Biol , vol.9 , Issue.18 , pp. S991-999
    • Knittler, M.R.1    Alberts, P.2    Deverson, E.V.3    Howard, J.C.4
  • 71
    • 84866927785 scopus 로고    scopus 로고
    • Role of S5b/PSMD5 in Proteasome Inhibition Caused by TNF-α/NFΚB in Higher Eukaryotes
    • Shim Sang M, Lee Won J, Kim Y, Chang Jong W, Song S, Jung Y-K. Role of S5b/PSMD5 in Proteasome Inhibition Caused by TNF-α/NFΚB in Higher Eukaryotes. Cell Rep. 2(3):603-15
    • Cell Rep , vol.2 , Issue.3 , pp. 603-615
    • Shim Sang, M.1    Lee Won, J.2    Kim, Y.3    Chang Jong, W.4    Song, S.5    Jung, Y-K.6
  • 72
    • 84862750546 scopus 로고    scopus 로고
    • Chapter 3 - Immunoproteasomes: Structure, Function, and Antigen Presentation. In: Progress in Molecular Biology and Translational Science. Edited by Tilman G
    • Waltham: Academic Press
    • Ferrington DA, Gregerson DS. Chapter 3 - Immunoproteasomes: Structure, Function, and Antigen Presentation. In: Progress in Molecular Biology and Translational Science. Edited by Tilman G, vol. Volume 109: Waltham: Academic Press; 2012: 75-112.
    • (2012) , vol.109 , pp. 75-112
    • Ferrington, D.A.1    Gregerson, D.S.2
  • 74
    • 77957957247 scopus 로고    scopus 로고
    • The Mitochondrial Proteome and Human Disease
    • Calvo SE, Mootha VK. The Mitochondrial Proteome and Human Disease. Annu Rev Genomics Hum Genet. 2010;11(1):25-44.
    • (2010) Annu Rev Genomics Hum Genet , vol.11 , Issue.1 , pp. 25-44
    • Calvo, S.E.1    Mootha, V.K.2
  • 75
    • 65549154306 scopus 로고    scopus 로고
    • Association of mitochondrial function and feed efficiency in poultry and livestock species
    • Bottje WG, Carstens GE. Association of mitochondrial function and feed efficiency in poultry and livestock species. J Anim Sci. 2009;87(14 Suppl):E48-63.
    • (2009) J Anim Sci , vol.87 , pp. E48-63
    • Bottje, W.G.1    Carstens, G.E.2
  • 76
    • 84861906560 scopus 로고    scopus 로고
    • Relationship between the activity of mitochondrial respiratory chain complexes and feed efficiency in fat-tailed Ghezel lambs
    • Sharifabadi HR, Zamiri MJ, Rowghani E, Bottje WG. Relationship between the activity of mitochondrial respiratory chain complexes and feed efficiency in fat-tailed Ghezel lambs. J Anim Sci. 2012;90(6):1807-15.
    • (2012) J Anim Sci , vol.90 , Issue.6 , pp. 1807-1815
    • Sharifabadi, H.R.1    Zamiri, M.J.2    Rowghani, E.3    Bottje, W.G.4
  • 77
    • 84868601291 scopus 로고    scopus 로고
    • The G0/G1 Switch Gene 2 (G0S2): Regulating metabolism and beyond
    • Heckmann BL, Zhang X, Xie X, Liu J. The G0/G1 Switch Gene 2 (G0S2): Regulating metabolism and beyond. Biochim Biophys Acta. 2013;1831(2):276-81.
    • (2013) Biochim Biophys Acta , vol.1831 , Issue.2 , pp. 276-281
    • Heckmann, B.L.1    Zhang, X.2    Xie, X.3    Liu, J.4
  • 78
    • 84943422275 scopus 로고    scopus 로고
    • Lipolytic inhibitor G0/G1 switch gene 2 inhibits reactive oxygen species production and apoptosis in endothelial cells
    • Wang Y, Zhang Y, Zhu Y, Zhang P. Lipolytic inhibitor G0/G1 switch gene 2 inhibits reactive oxygen species production and apoptosis in endothelial cells, vol. 308. 2015.
    • (2015) , vol.308
    • Wang, Y.1    Zhang, Y.2    Zhu, Y.3    Zhang, P.4
  • 79
    • 84930966066 scopus 로고    scopus 로고
    • Low-Density Lipoprotein Receptor-Related Protein 6 (LRP6) Is a Novel Nutritional Therapeutic Target for Hyperlipidemia, Non-Alcoholic Fatty Liver Disease, and Atherosclerosis
    • G-w G. Low-Density Lipoprotein Receptor-Related Protein 6 (LRP6) Is a Novel Nutritional Therapeutic Target for Hyperlipidemia, Non-Alcoholic Fatty Liver Disease, and Atherosclerosis. Nutrients. 2015;7(6):4453-64.
    • (2015) Nutrients , vol.7 , Issue.6 , pp. 4453-4464
    • G-w, G.1
  • 80
    • 84903702539 scopus 로고    scopus 로고
    • Wnt signaling directs a metabolic program of glycolysis and angiogenesis in colon cancer
    • Pate KT, Stringari C, Sprowl-Tanio S, Wang K, TeSlaa T, Hoverter NP, et al. Wnt signaling directs a metabolic program of glycolysis and angiogenesis in colon cancer, vol. 33. 2014.
    • (2014) , vol.33
    • Pate, K.T.1    Stringari, C.2    Sprowl-Tanio, S.3    Wang, K.4    TeSlaa, T.5    Hoverter, N.P.6
  • 81
    • 77954851049 scopus 로고    scopus 로고
    • Wnt signaling regulates mitochondrial physiology and insulin sensitivity
    • Yoon JC, Ng A, Kim BH, Bianco A, Xavier RJ, Elledge SJ. Wnt signaling regulates mitochondrial physiology and insulin sensitivity. Genes Dev. 2010;24(14):1507-18.
    • (2010) Genes Dev , vol.24 , Issue.14 , pp. 1507-1518
    • Yoon, J.C.1    Ng, A.2    Kim, B.H.3    Bianco, A.4    Xavier, R.J.5    Elledge, S.J.6
  • 83
    • 0031043030 scopus 로고    scopus 로고
    • The Mitochondrial Carnitine Palmitoyltransferase System - From Concept to Molecular Analysis
    • McGarry JD, Brown NF. The Mitochondrial Carnitine Palmitoyltransferase System - From Concept to Molecular Analysis. Eur J Biochem. 1997;244(1):1-14.
    • (1997) Eur J Biochem , vol.244 , Issue.1 , pp. 1-14
    • McGarry, J.D.1    Brown, N.F.2
  • 84
    • 0038037734 scopus 로고    scopus 로고
    • Inhibition of hypothalamic carnitine palmitoyltransferase-1 decreases food intake and glucose production
    • Obici S, Feng Z, Arduini A, Conti R, Rossetti L. Inhibition of hypothalamic carnitine palmitoyltransferase-1 decreases food intake and glucose production. Nat Med. 2003;9(6):756-61.
    • (2003) Nat Med , vol.9 , Issue.6 , pp. 756-761
    • Obici, S.1    Feng, Z.2    Arduini, A.3    Conti, R.4    Rossetti, L.5
  • 85
    • 0017370932 scopus 로고
    • The energy cost of fat and protein deposition in the rat
    • Pullar JD, Webster AJ. The energy cost of fat and protein deposition in the rat. Br J Nutr. 1977;37(3):355-63.
    • (1977) Br J Nutr , vol.37 , Issue.3 , pp. 355-363
    • Pullar, J.D.1    Webster, A.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.