Systematic evaluation of spliced alignment programs for RNA-seq data

Nature Methods

Volumn 10, Issue 12, 2013, Pages 1185-1191

  Engström, Pär G ^a,j   Steijger, Tamara ^a   Sipos, Botond ^a   Grant, Gregory R ^b   Kahles, André ^c,d   Rätsch, Gunnar ^c,d   Goldman, Nick ^a   Hubbard, Tim J ^e   Harrow, Jennifer ^e   Guigó, Roderic ^f,g   Bertone, Paul ^a,h,i   Alioto, Tyler ^a,c   Behr, Jonas ^c,d   Bohnert, Regina ^d   Campagna, Davide ^l   Davis, Carrie A ^m   Dobin, Alexander ^m   Gingeras, Thomas R ^m   Jean, Géraldine ^d   Kosarev, Peter ⁿ   Li, Sheng ^o   Liu, Jinze ^p   Mason, Christopher E ^o   Molodtsov, Vladimir ⁿ   Ning, Zemin ^e   Ponstingl, Hannes ^e   Prins, Jan F ^q   Ribeca, Paolo ^k   Seledtsov, Igor ⁿ   Solovyev, Victor ^r   Valle, Giorgio ^l   Vitulo, Nicola ^l   Wang, Kai ^p   Wu, Thomas D ^s   Zeller, Georg ^d   more..

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^d FRIEDRICH MIESCHER LABORATORY OF THE MAX PLANCK SOCIETY   (Germany)

^e WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^f CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^g UNIVERSITAT POMPEU FABRA   (Spain)

^h EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

ⁱ UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^j STOCKHOLM UNIVERSITY   (Sweden)

^k Centro Nacional de Analisis Genomico   (Spain)

^l UNIVERSITY OF PADOVA   (Italy)

^m Simons Center for Quantitative Biology   (United States)

ⁿ SOFTBERRY INC   (United States)

^o WEILL CORNELL MEDICAL COLLEGE   (United States)

^p UNIVERSITY OF KENTUCKY   (United States)

^q University of North Carolina   (United States)

^r UNIVERSITY OF LONDON   (United Kingdom)

^s GENENTECH INC   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR RNA;

ANIMAL TISSUE; ARTICLE; EXON; GENE STRUCTURE; HUMAN; HUMAN CELL; INDEL MUTATION; LEUKEMIA CELL; MOUSE; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ALIGNMENT; SIMULATION;

ANIMALS; CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; EXONS; FALSE POSITIVE REACTIONS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; K562 CELLS; MICE; REPRODUCIBILITY OF RESULTS; RNA SPLICING; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 84888861753     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2722     Document Type: Article

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