Motion correction in MRI of the brain

Physics in Medicine and Biology

Volumn 61, Issue 5, 2016, Pages R32-R56

  Godenschweger, F ^a   Kagebein U ^a   Stucht, D ^a   Yarach, U ^a,b   Sciarra, A ^a   Yakupov, R ^a   Lusebrink F ^a   Schulze, P ^a,e   Speck, O ^a,c,d,e  

^a OTTO VON GUERICKE UNIVERSITY   (Germany)

^b CHIANG MAI UNIVERSITY   (Thailand)

^c Center for Behavioral Brain Sciences   (Germany)

^d LEIBNIZ INSTITUTE FOR NEUROBIOLOGY   (Germany)

^e GERMAN CENTER FOR NEURODEGENERATIVE DISEASES DZNE   (Germany)

Author keywords

cross calibration; motion artefact; motion tracking; MRI; navigator; optical tracking; prospective retrospective motion correction

Indexed keywords

ADAPTIVE OPTICS; DATA ACQUISITION; MAGNETIC RESONANCE IMAGING;

CROSS CALIBRATION; MOTION ARTEFACTS; MOTION CORRECTION; MOTION TRACKING; NAVIGATOR; OPTICAL TRACKING;

MOTION ANALYSIS;

ANATOMY AND HISTOLOGY; ARTIFACT; BRAIN; HEAD MOVEMENT; HUMAN; IMAGE PROCESSING; NUCLEAR MAGNETIC RESONANCE IMAGING; PHYSIOLOGY; PROCEDURES; SIGNAL NOISE RATIO; STANDARDS;

ARTIFACTS; BRAIN; HEAD MOVEMENTS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; SIGNAL-TO-NOISE RATIO;

EID: 84959378320     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/61/5/R32     Document Type: Review

References (144)

1. Ackerman J et al 1986 Rapid 3D tracking of small RF coils Proc. 5th Annual Meeting of ISMRM (Montréal, Canada,) pp 1131-2
2. Aksoy M 2010 Real time prospective motion - correction ii - practical solutions Current Concepts of Motion Correction for MRI & MRS; ISMRM Workshop Series
3. Aksoy M et al 2006 A self-navigated spiral in and out pulse sequence design for retrospective motion correction Proc. 14th Scientific Meeting of ISMRM p 3197
4. Aksoy M et al 2012 Hybrid prospective and retrospective head motion correction to mitigate cross-calibration errors Magn. Reson. Med. 67 1237-51
5. Anderson A W and Gore J C 1994 Analysis and correction of motion artifacts in diffusion weighted imaging Magn. Reson. Med. 32 379-87
6. Andersson J L R, Skare S and Ashburner J 2003 How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging NeuroImage 20 870-88
7. Anderson A G et al 2011 Retrospective registration-based MRI motion correction with interleaved radial trajectories Proc. - Int. Symp. on Biomedical Imaging pp 1528-31
8. Andre J B et al 2015 Toward quantifying the prevalence, severity, and cost associated with patient motion during clinical MR examinations J. Am. Coll. Radiol. 12 689-95
9. Andrews-Shigaki B C et al 2011 Prospective motion correction for magnetic resonance spectroscopy using single camera retro-grate reflector optical tracking J. Magn. Reson. Imag. 33 498-504
10. Atkinson D and Hill D L G 2001 Automatic motion correction using prior knowledge Proc. 9th Annual Meeting ISMRM p 747
11. Atkinson D et al 1997 Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion IEEE Trans. Med. Imag. 16 903-10
12. Atkinson D et al 1999 Automatic compensation of motion artifacts in MRI Magn. Reson. Med. 41 163-70
13. Atkinson D et al 2004 Coil-based artifact reduction Magn. Reson. Med. 52 825-30
14. Atkinson D et al 2006 Nonlinear phase correction of navigated multi-coil diffusion images Magn. Reson. Med. 56 1135-9
15. Baldwin L N et al 2007 Characterization, prediction, and correction of geometric distortion in 3 T MR images Med. Phys. 34 388-99
16. Bammer R, Aksoy M and Liu C 2007 Augmented generalized SENSE reconstruction to correct for rigid body motion Magn. Reson. Med. 57 90-102
17. Bammer R et al 2011 Impact of motion on parallel transmission Proc. 19th Scientific Meeting ISMRM p 4590
18. Banerjee S et al 2013 Parallel and partial Fourier imaging with prospective motion correction Magn. Reson. Med. 69 421-33
19. Barmet C, De Zanche N and Pruessmann K P 2008 Spatiotemporal magnetic field monitoring for MR Magn. Reson. Med. 60 187-97
20. Batchelor P G et al 2005 Matrix description of general motion correction applied to multishot images Magn. Reson. Med. 54 1273-80
21. Bernstein M A, King K F and Zhou X J 2004 Handbook of MRI Pulse Sequences (Amsterdam: Elsevier)
22. Bertelsen A et al 2009 Tractography in the fetal brain with correction of fetal and maternal motion using model-based slice to volume registration Proc. 17th Scientific Meeting ISMRM p 3416
23. Boegle R, Maclaren J and Zaitsev M 2010 Combining prospective motion correction and distortion correction for EPI: towards a comprehensive correction of motion and susceptibility-induced artifacts Magn. Reson. Mater. Phys. Biol. Med. 23 263-73
24. Bookwalter C A, Griswold M A and Duerk J L 2010 Multiple overlapping k-space junctions for investigating translating objects (MOJITO) IEEE Trans. Med. Imag. 29 339-49
25. Boussel L et al 2006 Swallowing, arterial pulsation, and breathing induce motion artifacts in carotid artery MRI J. Magn. Reson. Imag. 23 413-5
26. Butts K et al 1996 Diffusion-weighted interleaved echo-planar imaging with a pair of orthogonal navigator echoes Magn. Reson. Med. 35 763-70
27. Bydder M, Larkman D J and Hajnal J V 2002 Detection and elimination of motion artifacts by regeneration of k-space Magn. Reson. Med. 47 677-86
28. Chen N K and Wyrwicz A M 1999 Correction for EPI distortions using multi-echo gradient-echo imaging Magn. Reson. Med. 41 1206-13
29. Chen N K and Wyrwicz A M 2001 Optimized distortion correction technique for echo planar imaging Magn. Reson. Med. 45 525-8
30. Cheng J Y et al 2012 Nonrigid motion correction in 3D using autofocusing with localized linear translations Magn. Reson. Med. 68 1785-97
31. Clare S, Evans J and Jezzard P 2006 Requirements for room temperature shimming of the human brain Magn. Reson. Med. 55 210-4
32. de Crespigny A J et al 1995 Navigated diffusion imaging of normal and ischemic human brain Magn. Reson. Med. 33 720-8
33. Derbyshire J A et al 1998 Dynamic scan-plane tracking using MR position monitoring J. Magn. Reson. Imag. 8 924-32
34. Doran S J et al 2005 A complete distortion correction for MR images: I. Gradient warp correction Phys. Med. Biol. 50 1343-61
35. Duerst Y et al 2014 Real-time feedback for spatiotemporal field stabilization in MR systems Magn. Reson. Med. 73 884-93
36. Dumoulin C L, Souza S P and Darrow R D 1993 Real-time position monitoring of invasive devices using magnetic resonance Magn. Reson. Med. 29 411-5
37. Ehman R L and Felmlee J P 1989 Adaptive technique for high-definition MR imaging of moving structures Radiology 173 255-63
38. Firmin D and Keegan J 2001 Navigator echoes in cardiac magnetic resonance J. Cardiovasc. Magn. Reson. 3 183-93
39. Forman C et al 2011 Self-encoded marker for optical prospective head motion correction in MRI Med. Image Anal. 15 708-19
40. Fu Z W et al 1995 Orbital navigator echoes for motion measurements in magnetic resonance imaging Magn. Reson. Med. 34 746-53
41. Gai N and Axel L 1996 Correction of motion artifacts in linogram and projection reconstruction MRI using geometry and consistency constraints Med. Phys. 23 251-62
42. Haacke E M and Patrick J L 1986 Reducing motion artifacts in two-dimensional Fourier transform imaging Magn. Reson. Imag. 4 359-76
43. Hedley M, Yan H and Rosenfeld D 1991 Motion artifact correction in MRI using generalized projections IEEE Trans. Med. Imag. 10 40-6
44. Heiland S 2008 From A as in aliasing to Z as in zipper: artifacts in MRI Clin. Neuroradiol. 18 25-36
45. Hennig J 1999 K-space sampling strategies Eur. Radiol. 9 1020-31
46. Herbst M et al 2012 Prospective motion correction with continuous gradient updates in diffusion weighted imaging Magn. Reson. Med. 67 326-38
47. Herbst M et al 2015 Prospective motion correction of segmented diffusion weighted EPI Magn. Reson. Med. 4 1675-81
48. Hess A T et al 2011 Real-time motion and B0 corrected single voxel spectroscopy using volumetric navigators Magn. Reson. Med. 66 314-23
49. Hu H H et al 2005 Continuously moving table MRI with SENSE: application in peripheral contrast enhanced MR angiography Magn. Reson. Med. 54 1025-31
50. Hu X and Kim S G 1994 Reduction of signal fluctuation in functional MRI using navigator echoes Magn. Reson. Med. 31 495-503
51. Huizinga W et al 2014 Groupwise registration for correcting subject motion and eddy current distortions in diffusion MRI using a PCA based dissimilarity metric MICCAI Workshop on Computational Diffusion MRI and Brain Connectivity ed T Schultz et al (Berlin: Springer) pp 163-74
52. Hutton C et al 2002 Image distortion correction in fMRI: a quantitative evaluation NeuroImage 16 217-40
53. Jenkinson M et al 2002 Improved optimization for the robust and accurate linear registration and motion correction of brain images NeuroImage 17 825-41
54. Jenkinson M and Smith S 2001 A global optimisation method for robust affine registration of brain images Med. Image Anal. 5 143-56
55. Jezzard P and Balaban R S 1995 Correction for geometric distortion in echo-planar images from B-0 field variations Magn. Reson. Med. 34 65-73
56. Jezzard P and Clare S 1999 Sources of distortion in functional MRI data Human Brain Mapp. 8 80-5
57. Jiang A et al 1995 Motion detection and correction in functional MR imaging Human Brain Mapp. 3 224-35
58. Kadashevich I, Danishad A and Speck O 2011 Automatic motion selection in one step cross-calibration for prospective MR motion correction Magn. Reson. Mater. Phys. Biol. Med. 24 266-7
59. Kalman R E 1960 A new approach to linear filtering and prediction problems Trans. ASME - J. Basic Eng. 82 35-45
60. Katscher U et al 2003 Transmit SENSE Magn. Reson. Med. 49 144-50
61. Keating B and Ernst T 2012 Real-time dynamic frequency and shim correction for single-voxel magnetic resonance spectroscopy Magn. Reson. Med. 68 1339-45
62. Kim B et al 1999 Motion correction in fMRI via registration of individual slices into an anatomical volume Magn. Reson. Med. 41 964-72
63. Kim K et al 2010 Intersection based motion correction of multislice MRI for 3-D in utero fetal brain image formation IEEE Trans. Med. Imag. 29 146-58
64. Kober T et al 2011 Head motion detection using FID navigators Magn. Reson. Med. 66 135-43
65. Kochunov P et al 2006 Retrospective motion correction protocol for high-resolution anatomical MRI Human Brain Mapp. 27 957-62
66. Korin H W et al 1995 Spatial-frequency-tuned markers and adaptive correction for rotational motion Magn. Reson. Med. 33 663-9
67. Krueger S et al 2006 Prospective intra-image compensation for non-periodic rigid body motion using active markers Proc. 14th Scientific Meeting ISMRM p 3196
68. Lauzon M L and Rutt B K 1993 Generalized K-space analysis and correction of motion effects in MR imaging Magn. Reson. Med. 30 438-46
69. Lee C C et al 1996 Real-time adaptive motion correction in functional MRI Magn. Reson. Med. 36 436-44
70. Lee C C et al 1998 A prospective approach to correct for inter-image head rotation in fMRI Magn. Reson. Med. 39 234-43
71. Lin W and Song H K 2006 Improved optimization strategies for autofocusing motion compensation in MRI via the analysis of image metric maps Magn. Reson. Imag. 24 751-60
72. Lin W et al 2010 Motion correction using an enhanced floating navigator and GRAPPA operations Magn. Reson. Med. 63 339-48
73. Liu C, Moseley M E and Bammer R 2005 Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling Magn. Reson. Med. 54 1412-22
74. Liu C et al 2004 Self-navigated interleaved spiral (SNAILS): application to high-resolution diffusion tensor imaging Magn. Reson. Med. 52 1388-96
75. Loktyushin A et al 2013 Blind retrospective motion correction of MR images Magn. Reson. Med. 70 1608-18
76. Maclaren J et al 2009 A Kalman filtering framework for prospective motion correction Proc. 17th Scientific Meeting ISMRM p 4602
77. Maclaren J et al 2010 Navigator accuracy requirements for prospective motion correction Magn. Reson. Med. 63 162-70
78. Maclaren J et al 2011 Combined prospective and retrospective motion correction to relax navigator requirements Magn. Reson. Med. 65 1724-32
79. Maclaren J et al 2012 Measurement and correction of microscopic head motion during magnetic resonance imaging of the brain PLoS One 7 e48088
80. Maclaren J et al 2013 Prospective motion correction in brain imaging: a review Magn. Reson. Med. 69 621-36
81. Manduca A et al 2000 Autocorrection in MR imaging: adaptive motion correction without navigator echoes Radiology 215 904-9
82. Mangin J F et al 2002 Distortion correction and robust tensor estimation for MR diffusion imaging Med. Image Anal. 6 191-8
83. Marsland S, Twining C J and Taylor C J 2008 A minimum description length objective function for groupwise non-rigid image registration Image Vision Comput. 26 333-46
84. McGee K P et al 2000a Image metric-based correction (autocorrection) of motion effects: analysis of image metrics J. Magn. Reson. Imag. 11 174-81
85. McGee K P et al 2000b Rapid autocorrection using prescan navigator echoes Magn. Reson. Med. 43 583-8
86. Mendes J, Kholmovski E and Parker D L 2009 Rigid-body motion correction with self-navigation MRI Magn. Reson. Med. 61 739-47
87. Metz C T et al 2011 Nonrigid registration of dynamic medical imaging data using nD + t B-splines and a groupwise optimization approach Med. Image Anal. 15 238-49
88. Miller E G, Matsakis N E and Viola P A 2000 Learning from one example through shared densities on transforms Proc. IEEE Conf. on Computer Vision and Pattern Recognition 1 464-71
89. Nehrke K and Börnert P 2005 Prospective correction of affine motion for arbitrary MR sequences on a clinical scanner Magn. Reson. Med. 54 1130-8
90. Norris D G and Driesel W 2001 Online motion correction for diffusion-weighted imaging using navigator echoes: application to RARE imaging without sensitivity loss Magn. Reson. Med. 45 729-33
91. Ooi M B et al 2009 Prospective real-time correction for arbitrary head motion using active markers Magn. Reson. Med. 62 943-54
92. Ooi M B et al 2011 Echo-planar imaging with prospective slice-by-slice motion correction using active markers Magn. Reson. Med. 66 73-81
93. Ooi M B et al 2013a Combined prospective and retrospective correction to reduce motion-induced image misalignment and geometric distortions in EPI Magn. Reson. Med. 69 803-11
94. Ooi M B et al 2013b Prospective motion correction using inductively coupled wireless RF coils Magn. Reson. Med. 70 639-47
95. Ordidge R J et al 1994 Correction of motional artifacts in diffusion-weighted MR images using navigator echoes Magn. Reson. Imag. 12 455-60
96. Paschal C B and Morris H D 2004 K-space in the clinic J. Magn. Reson. Imag. 19 145-59
97. Pipe J G 1999 Motion correction with PROPELLER MRI: application to head motion and free-breathing cardiac imaging Magn. Reson. Med. 42 963-9
98. Polzin J A et al 2004 Correction for gradient nonlinearity in continuously moving table MR imaging Magn. Reson. Med. 52 181-7
99. Qin L et al 2009 Prospective head-movement correction for high-resolution MRI using an in-bore optical tracking system Magn. Reson. Med. 62 924-34
100. Qin L et al 2013 Prospective motion correction using tracking coils Magn. Reson. Med. 69 749-59
101. Reber P J et al 1998 Correction of off resonance-related distortion in echo-planar imaging using EPI-based field maps Magn. Reson. Med. 39 328-30
102. Robson M D, Anderson A W and Gore J C 1997 Diffusion-weighted multiple shot echo planar imaging of humans without navigation Magn. Reson. Med. 38 82-8
103. Rousseau F et al 2005 A novel approach to high resolution fetal brain MR imaging Med. Image Comput. Comput.-Assist. Intervention 8 548-55
104. Schulz J et al 2012 An embedded optical tracking system for motion-corrected magnetic resonance imaging at 7 T Magn. Reson. Mater. Phys. Biol. Med. 25 443-53
105. Sengupta S et al 2013 Prospective real-time head motion correction using inductively coupled wireless NMR probes Magn. Reson. Med. 72 971-85
106. Setsompop K et al 2006 Parallel RF transmission with eight channels at 3 tesla Magn. Reson. Med. 56 1163-71
107. Shankaranarayanan A et al 2001 Two-step navigatorless correction algorithm for radial k-space MRI acquisitions Magn. Reson. Med. 45 277-88
108. Shechter G and McVeigh E R 2003 MR motion correction of 3D affine deformations Proc. 11th Scientific Meeting of ISMRM p 1054
109. Singh A et al 2015 Optical tracking with two markers for robust prospective motion correction for brain imaging Magn. Reson. Mater. Phys. Biol. Med. 28 523-34
110. Speck O, Hennig J and Zaitsev M 2006 Prospective real-time slice-by-slice motion correction for fMRI in freely moving subjects Magn. Reson. Mater. Phys. Biol. Med. 19 55-61
111. Splitthoff D N and Zaitsev M 2009 SENSE shimming (SSH): a fast approach for determining B0 field inhomogeneities using sensitivity coding Magn. Reson. Med. 62 1319-25
112. Stucht D et al 2015 Highest resolution in vivo human brain MRI using prospective motion rcorrection PLoS One 10 e0133921
113. Studholme C 2011 Mapping fetal brain development in utero using magnetic resonance imaging: the Big Bang of brain mapping Annu. Rev. Biomed. Eng. 13 345-68
114. Sulikowska A et al 2014 Will field shifts due to head rotation compromise motion correction? Proc. 22nd Scientific Meeting of ISMRM p 885
115. Sumanaweera T S et al 1994 Characterization of spatial distortion in magnetic resonance imaging and its implications for stereotactic surgery Neurosurgery 35 696-704
116. Sutton B P, Noll D C and Fessler J A 2004 Dynamic field map estimation using a spiral-in/spiral-out acquisition Magn. Reson. Med. 51 1194-204
117. Thesen S et al 2000 Prospective Acquisition Correction for head motion with image-based tracking for real-time fMRI Magn. Reson. Med. 44 457-65
118. Tisdall M D et al 2012 Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI Magn. Reson. Med. 68 389-99
119. Tremblay M, Tam F and Graham S J 2005 Retrospective coregistration of functional magnetic resonance imaging data using external monitoring Magn. Reson. Med. 53 141-9
120. Umeyama S 1991 Least-squares estimation of transformation parameters between two point patterns IEEE Trans. Pattern Anal. Mach. Intell. 13 376-80
121. Vaillant G et al 2014 Retrospective rigid motion correction in k-space for segmented radial MRI IEEE Trans. Med. Imag. 33 1-10
122. van Heeswijk R et al 2012 Motion compensation strategies in magnetic resonance imaging Crit. Rev. Biomed. Eng. 40 99-119
123. van der Kouwe A J W, Benner T and Dale A M 2006 Real-time rigid body motion correction and shimming using cloverleaf navigators Magn. Reson. Med. 56 1019-32
124. van der Kouwe A J W and Dale A M 2001 Real-time motion correction using octant navigators Neuroimage 13 48
125. van der Kouwe A et al 2009 Real-time prospective rigid-body motion correction with the EndoScout gradient-based tracking system Proc. 17th Scientific Meeting ISMRM p 4623
126. Wachinger C and Navab N 2013 Simultaneous registration of multiple images: similarity metrics and efficient optimization IEEE Trans. Pattern Anal. Mach. Intell. 35 1221-33
127. Walton L et al 1997 Stereotactic localization with magnetic resonance imaging: a phantom study to compare the accuracy obtained using two-dimensional and three-dimensional data acquisitions Neurosurgery 41 131-7
128. Wang D et al 2004 Geometric distortion in clinical MRI systems: I. Evaluation using a 3D phantom Magn. Reson. Imag. 22 1211-21
129. Ward H A et al 2000 Prospective multiaxial motion correction for fMRI Magn. Reson. Med. 43 459-69
130. Ward H A, Riederer S J and Jack C R 2002 Real-time autoshimming for echo planar timecourse imaging Magn. Reson. Med. 48 771-80
131. Weih K S et al 2004 Online motion correction for diffusion-weighted segmented-EPI and FLASH imaging Magn. Reson. Mater. Phys. Biol. Med. 16 277-83
132. Welch E B et al 2002 Spherical navigator echoes for full 3D rigid body motion measurement in MRI Magn. Reson. Med. 47 32-41
133. Welch E B et al 2004 Self-navigated motion correction using moments of spatial projections in radial MRI Magn. Reson. Med. 52 337-45
134. White N et al 2010 PROMO: real-time prospective motion correction in MRI using image-based tracking Magn. Reson. Med. 63 91-105
135. Yang Q X et al 2002 Analysis of wave behavior in lossy dielectric samples at high field Magn. Reson. Med. 47 982-9
136. Yarach U et al 2015a Correction of gradient nonlinearity artifacts in prospective motion correction for 7 T MRI Magn. Reson. Med. 73 1562-9
137. Yarach U et al 2015b The correction of motion-induced coil sensitivity miscalibration in parallel imaging with prospective motion correction Proc. 23rd Scientific Meeting, Int. Society for Magnetic Resonance in Medicine p 2558
138. Zahneisen B et al 2014 Fast noniterative calibration of an external motion tracking device Magn. Reson. Med. 71 1489-500
139. Zahneisen B et al 2015 Reverse retrospective motion correction Magn. Reson. Med. (doi: 10.1002/mrm.25830)
140. Zahneisen B and Ernst T 2016 Homogeneous coordinates in motion correction Magn. Reson. Med. 5 274-9
141. Zaitsev M, Maclaren J and Herbst M 2015 Motion artifacts in MRI: a complex problem with many partial solutions J. Magn. Reson. Imag. 2 881-901
142. Zaitsev M et al 2006 Magnetic resonance imaging of freely moving objects: prospective real-time motion correction using an external optical motion tracking system Neuroimage 31 1038-50
143. Zeng H and Constable R T 2002 Image distortion correction in EPI: comparison of field mapping with point spread function mapping Magn. Reson. Med. 48 137-46
144. Zhou X J et al 1998 Concomitant magnetic-field-induced artifacts in axial echo planar imaging Magn. Reson. Med. 39 596-605