Augmented generalized SENSE reconstruction to correct for rigid body motion

Magnetic Resonance in Medicine

Volumn 57, Issue 1, 2007, Pages 90-102

  Bammer, Roland ^a   Aksoy, Murat ^a   Liu, Chunlei ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

Motion; MRI; Parallel imaging; SENSE; Spiral imaging

Indexed keywords

IMAGE ENHANCEMENT; IMAGE QUALITY; ITERATIVE METHODS; SPACE FLIGHT;

AUTOMATIC REGISTRATION; CONVENTIONAL SPIRALS; CORRECTION APPROACHES; K-SPACE TRAJECTORIES; MOTION; PARALLEL IMAGING; SENSE; SPIRAL IMAGING;

MAGNETIC RESONANCE IMAGING;

ARTICLE; ARTIFACT REDUCTION; BODY MOVEMENT; COMPUTER SIMULATION; HUMAN; HUMAN EXPERIMENT; IMAGE DISPLAY; IMAGE ENHANCEMENT; IMAGE QUALITY; IMAGE RECONSTRUCTION; MATHEMATICAL ANALYSIS; MEASUREMENT ERROR; METHODOLOGY; MOTION; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; RADIOLOGICAL PROCEDURES; SENSE METHOD; TECHNIQUE;

EID: 33846167110     PISSN: 07403194     EISSN: 15222594     Source Type: Journal    
DOI: 10.1002/mrm.21106     Document Type: Article

References (45)

1. Larkman DJ, Atkinson D, Hajnal JV. Artifact reduction using parallel imaging methods. Top Magn Reson Imaging 2004;15:267-275.
2. Pipe JG, Farthing VG, Forbes KP. Multishot diffusion-weighted FSE using PROPELLER MRI. Magn Reson Med 2002;47:42-52.
3. Bydder M, Larkman DJ, Hajnal JV. Detection and elimination of motion artifacts by regeneration of k-space. Magn Reson Med 2002;47:677-686.
4. Atkinson D, Hill DL. Reconstruction after rotational motion. Magn Reson Med 2003;49:183-187.
5. Bydder M, Atkinson D, Larkman DJ, Hill DL, Hajnal JV. SMASH navigators. Magn Reson Med 2003;49:493-500.
6. Thesen S, Heid O, Mueller E, Schad LR. Prospective acquisition correction for head motion with image-based tracking for real-time fMRI. Magn Reson Med 2000;44:457-465.
7. Ward HA, Riederer SJ, Grimm RC, Ehman RL, Felmlee JP, Jack Jr CR, Prospective multiaxial motion correction for fMRI. Magn Reson Med 2000;43:459-469.
8. Gonzales R, Woods R. Digital image processing. Reading, MA: Addison-Wesley Publishing Company; 1993.
9. Hutchinson M, Raff U. Fast MRI data acquisition using multiple detectors. Magn Reson Med 1988;6:87-91.
10. Ra JB, Rim CY. Fast imaging using subencoding data sets from multiple detectors. Magn Reson Med 1993;30:142-145.
11. Zhu Y, Hardy CJ, Sodickson DK, Giaquinto RO, Dumoulin CL, Kenwood G, Niendorf T, Lejay H, McKenzie CA, Ohliger MA, Rofsky NM. Highly parallel volumetric imaging with a 32-element RF coil array. Magn Reson Med 2004;52:869-877.
12. Weiger M, Pruessmann KP, Boesiger P. 2D SENSE for faster 3D MRI. MAGMA 2002;14:10-19.
13. Jakob PM, Griswold MA, Edelman RR, Manning WJ, Sodickson DK. Accelerated cardiac imaging using the SMASH technique. J Cardiovasc Magn Reson 1999;1.
14. Griswold MA, Jakob PM, Chen Q, Goldfarb JW, Manning WJ, Edelman RR, Sodickson DK. Resolution enhancement in single-shot imaging using simultaneous acquisition of spatial harmonics (SMASH). Magn Reson Med 1999;41:1236-1245.
15. BammerR, Auer M, Keeling SL, Augustin M, Stables LA, Prokesch RW, Stollberger R, Moseley ME, Fazekas F. Diffusion tensor imaging using single-shot SENSE-EPI. Magn Reson Med 2002;48:128-136.
16. Sodickson DK, Manning WJ. Simultaneous acquisition of spatial harmonics (SMASH): fast imaging with radiofrequency coil arrays. Magn Reson Med 1997;38:591-603.
17. Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, Kiefer B, Haase A. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 2002;47:1202-1210.
18. Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn Reson Med 1999;42:952-962.
19. Jackson JI, Meyer CH, Nishimura DH, Macovski A. Selection of a convolution function for fourier inversion using gridding. IEEE Trans Med Imaging 1991;10:473-478.
20. Rasche V, Proksa R, Sinkus R, Bornert P, Eggers H. Resampling of data between arbitrary grids using convolution interpolation. IEEE Trans Med Imaging 1999;18:385-392.
21. Golub GH, Van Loan CF. Matrix computations. Baltimore, MD: Johns Hopkins University Press; 1983.
22. Pruessmann KP, Weiger M, Bornert P, Boesiger P. Advances in sensitivity encoding with arbitrary k-space trajectories. Magn Reson Med 2001;46:638-651.
23. Liu C, Moseley ME, Bammer R. Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-Cartesian k-space sampling. Magn Reson Med 2005;54:1412-1422.
24. Wajer FTA, Pruessmann KP. Major speedup of reconstruction for sensitivity encoding with arbitrary trajectories. In: Proceedings of the 9th Annual Meeting of ISMRM, Glasgow, Scotland, 2001 (Abstract 767).
25. Frigo M, Johnson S. The design and implementation of FFTW3. 2005. p 216-231.
26. Eggers H, Boernert P, Boesiger P. Comparison of gridding- and convolution-based iterative reconstruction algorithms for sensitivity-encoded non-Cartesian acquisitions. In: Proceedings of the 10th Annual Meeting of ISMRM, Honolulu, HI, USA, 2002 (Abstract 743).
27. Batchelor PG, Atkinson D, Irarrazaval P, Hill DL, Hajnal J, Larkman D. Matrix description of general motion correction applied to multishot images. Magn Reson Med 2005;54:1273-1280.
28. Kim DH, Adalsteinsson E, Spielman DM. Simple analytic variable density spiral design. Magn Reson Med 2003;50:214-219.
29. Liu C, Bammer R, Kim DH, Moseley ME. Self-navigated interleaved spiral (SNAILS): application to high-resolution diffusion tensor imaging. Magn Reson Med 2004;52:1388-1396.
30. Wells III WM, Viola P, Atsumi H, Nakajima S, Kikinis R. Multi-modal volume registration by maximization of mutual information. Med Image Anal 1996;1:35-51.
31. Studholme C, Constable RT, Duncan JS. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model. IEEE Trans Med Imaging 2000;19:1115-1127.
32. Woods RP, Grafton ST, Holmes CJ, Cherry SR, Mazziotta JC. Automated image registration: I. General methods and intrasubject, intramodality validation. J Comput Assist Tomogr 1998;22:139-152.
33. Ashburner J, Friston KJ. Voxel-based morphometry-the methods. Neuroimage 2000;11 Pt 1:805-821.
34. Press W, Teukolsky S, Vetterling W, Flannery B. Numerical recipes in C. Cambridge, MA: Cambridge University Press; 1992.
35. Friston KJ, Ashburner J, Frith C, Poline JB, Heather JD, Frackowiak R. Spatial registration and normalization of images. Hum Brain Mapp 1995;2:165-189.
36. Park S, Schowengerdt R. Image reconstruction by parametric cubic convolution. Comput Vis Graph Image Process 1983;23:258-272.
37. Pluim JP, Maintz JB, Viergever MA. Mutual-information-based registration of medical images: a survey. IEEE Trans Med Imaging 2003;22:986-1004.
38. Lempel A, Ziv J. On the complexity of finite sequences. IEEE Trans Inform Theory 1976;22:75-81.
39. Aksoy M, Liu C, Moseley ME, Bammer R. A self-navigated spiral in & out pulse sequence design for retrospective motion correction. In: Proceedings of the 14th Annual Meeting of ISMRM, Seattle, WA, USA (Abstract 3197).
40. Glover GH, Lai S. Self-navigated spiral fMRI: interleaved versus single-shot. Magn Reson Med 1998;39:361-368.
41. Bammer R, Auer M. Correction of eddy-current induced image warping in diffusion-weighted single-shot EPI using constrained non-rigid mutual information image registration. In: Proceedings of the 9th Annual Meeting of ISMRM, Glasgow, Scotland, 2001 (Abstract 508).
42. Pipe JG. Motion correction with PROPELLER MRI: application to head motion and free-breathing cardiac imaging. Magn Reson Med 1999;42:963-969.
43. Zech CJ, Herrmann KA, Huber A, Dietrich O, Stemmer A, Herzog P, Reiser MF, Schoenberg SO. High-resolution MR-imaging of the liver with T2-weighted sequences using integrated parallel imaging: comparison of prospective motion correction and respiratory triggering. J Magn Reson Imaging 2004;20:443-450.
44. Kannengiesser SAR, Brenner AR, Noll TG. Accelerated image reconstruction for sensitivity encoded imaging with arbitrary k-space trajectories. In: Proceedings of the 8th Annual Meeting of ISMRM, Denver, CO, USA, 2000 (Abstract 155).
45. Griswold M, Heidemann R, Jakob P. Direct parallel imaging reconstruction of radially sampled data using GRAPPA with relative shifts. In: Proceedings of the 11th Annual Meeting of ISMRM, Toronto, Canada, 2003 (Abstract 2349).