How to correct susceptibility distortions in spin-echo echo-planar images: Application to diffusion tensor imaging

NeuroImage

Volumn 20, Issue 2, 2003, Pages 870-888

  Andersson, Jesper L R ^a   Skare, Stefan ^a   Ashburner, John ^b  

^a KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^b WELLCOME TRUST CENTRE FOR NEUROIMAGING   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; DIFFUSION TENSOR IMAGING; DIFFUSION WEIGHTED IMAGING; GEOMETRY; IMAGE ANALYSIS; MAGNETISM; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING;

EID: 0142074685     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1053-8119(03)00336-7     Document Type: Article

References (43)

1. Alexander, D.C., Gee, J.C., Bajcsy, R.K., 1999. Elastic matching of diffusion tensor MRI's. Proceedings of the Computer Vision and Pattern Recognition Conference, Los Alamitos, CA, pp. 313-318.
2. Andersson J.L.R., Hutton C., Ashburner J., Turner R., Friston K. Modelling geometric deformations in EPI time series. NeuroImage. 13:2001;903-919. doi:10.1006/nimg.2001.0746.
3. Andersson J.L.R., Skare S. A model-based method for retrospective correction of geometric distortions in diffusion-weighted EPI. NeuroImage. 16:2002;177-199. doi:10.1006/nimg.2001.1039.
4. Ashburner J., Hutton C., Frackowiak R.S.J., Johnsrude I., Price C., Friston K.J. Identifying global anatomical differences deformation-based morphometry . Hum. Brain Mapp. 6:1998;348-357.
5. Ashburner J., Friston K.J. Nonlinear spatial normalization using basis functions. Hum. Brain Mapp. 7:1999;254-266.
6. Ashburner J., Andersson J.L.R., Friston K.J. High-dimensional image registration using symmetric priors. NeuroImage. 9:1999;619-628.
7. Ashburner J., Friston K.J. Voxel-based morphometry - the methods. NeuroImage. 11:2000;805-821.
8. Basser P.J., Mattiello J., Le Bihan D. Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson. B. 103:1994;247-254.
9. Bowtell, R., McIntyre, D.J.O., Commandre, M.-J., Glover, P.M., Mansfield, P., 1994. Correction of geometric distortion in echo planar images. Proceedings of the 2nd Meeting of the Society of Magnetic Resonance, p. 411.
10. Chang H., Fitzpatrick J.M. A technique for accurate magnetic resonance imaging in the presence of field inhomogeneities. IEEE Trans. Med. Imaging. 11:1992;319-329.
11. Christensen G.E., Rabbitt R.D., Miller M.I. Deformable templates using large deformation kinematics. IEEE Trans. Imaging Proc. 5:1996;1435-1447.
12. Cusack R., Papadakis N. New robust 3-D phase-unwrapping algorithms application to magnetic field-mapping and undistorting echoplanar images . NeuroImage. 16:2002;754-764. doi:10.1006/nimg.2002.1092.
13. Frahm J., Merboldt K.-D., Hänicke W. The effects of intravoxel dephasing and incomplete slice refocusing on susceptibility contrast in gradient-echo MRI. J. Magn. Reson. B. 109:1995;234-237.
14. Freeborough P.A., Fox N.C. Modelling brain deformations in Alzheimer disease by fluid registration of serial 3D MR images. J. Comput. Assist. Tomogr. 22:1998;838-843.
15. Gaser C., Volz H.P., Kiebel S., Riehemann S., Sauer H. Detecting structural changes in whole brain based on nonlinear deformations - application to schizophrenia research. NeuroImage. 10:1999;107-113.
16. Good C.D., Johnsrude I.S., Ashburner J., Henson R.N.A., Friston K.J., Frackowiak R.S.J. A voxel-based morphometric study of ageing in 465 normal adult human brains. NeuroImage. 14:2001;21-36. doi:10.1006/nimg.2001.0786.
17. Gudbjartsson H., Maier S.E., Mulkern R.V., Morocz I.A., Patz S., Jolesz F.A. Line scan diffusion imaging. Magn. Reson. Med. 36:1996;509-519.
18. Hutton C., Bork A., Josephs O., Deichmann R., Ashburner J., Turner R. Image distortion correction in fMRI a quantitative evaluation . NeuroImage. 16:2002;217-240. doi:10.1006/nimg.2001.1054.
19. Jain A.K. Fundamentals of Digital Image Processing. 1989;Prentice-Hall, New Jersey.
20. Jenkinson M. Improved unwarping of EPI images using regularised B0 maps. NeuroImage. 13:2001;S165.
21. Jenkinson M. Fast, automated, N-dimensional phase-unwrapping algorithm. Magn. Reson. Med. 49:2003;193-197.
22. 0 field variations. Magn. Reson. Med. 34:1995;65-73.
23. Jezzard P., Barnett A.S., Pierpaoli C. Characterisation of and correction for eddy current artefacts in echo planar diffusion imaging. Magn. Reson. Med. 39:1998;801-812.
24. Jones D.K., Horsfield M.A., Simmons A. Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging. Magn. Reson. Med. 42:1999;515-525.
25. Kadah Y.M., Hu X. Simulated phase evolution rewinding (sphere) a technique for reducing B0 inhomogeneity effects in MR images . Magn. Reson. Med. 38:1997;615-627.
26. Kannengießer S.A.R., Wang Y., Haacke E.M. Geometric distortion correction in gradient-echo imaging by use of dynamic time warping. Magn. Reson. Med. 42:1999;585-590.
27. Kybic J., Thévenaz P., Nirkko A., Unser M. Unwarping of unidirectionally distorted EPI images. IEEE Trans. Med. Imaging. 19:2000;80-93.
28. Le Bihan D., Breton E., Lallemand D., Grenier P., Cabanis E., Laval-Jeantet M. MR imaging of intravoxel incoherent motions application to diffusion and perfusion in neurologic disorders . Radiology. 161:1986;401-407.
29. Maes F., Collignon A., Vandermeulen D., Marchal G., Suetens P. Multimodality image registration by maximisation of mutual information. IEEE Trans. Med. Imaging. 16:1997;187-198.
30. Maguire E.A., Gadian D.G., Johnsrude I.S., Good C.D., Ashburner J., Frackowiak R.S.J., Frith C.D. Navigation-related structural changes in the hippocampi of taxi drivers. Proc. Natl. Acad. Sci. USA. 97:2000;4398-4403.
31. Marsden J.E., Tromba A.J. Vector Calculus. 2nd ed :1981;Freeman, San Fransisco.
32. May A., Ashburner J., Buchel C., McGonigle D.J., Friston K.J., Frackowiak R.S.J., Goadsby P.J. Correlation between structural and functional changes in brain in an idiopathic headache syndrome. Nat. Med. 5:1999;836-838.
33. Munger P., Crelier G.R., Peters T.M., Pike G.B. An inverse problem approach to the correction of distortion in EPI images. IEEE Trans. Med. Imaging. 19:2000;681-689.
34. Pierpaoli C., Jezzard P., Basser P.J., Barnett A., Di Chiro G. Diffusion tensor MR imaging of the human brain. Radiology. 201:1996;637-648.
35. Powell M.J.D. An efficient method for finding the minimum of several variables without calculating derivatives. Comput. J. 7:1964;155-163.
36. Skare S., Hedehus M., Moseley M.E., Li T.-Q. Condition number as a measure of noise performance of diffusion tensor data acquisition schemes with MRI. J. Magn. Reson. 147:2000;340-352.
37. Skare S., Andersson J.L.R. On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn. Reson. Imaging. 19:2001;1125-1128.
38. Studholme C., Constable R.T., Duncan J.S. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model. IEEE Trans. Med. Imag. 19:2000;1115-1127.
39. Thurfjell L., Bohm C., Greitz T., Eriksson L. Transformations and algorithms in a computerized brain atlas. IEEE Trans. Nucl. Sci. 40:1993;1187-1191.
40. Turner R., Le Bihan D., Maier J., Vavrek R., Hedges L.K., Pekar J. Echo-planar imaging of intra-voxel incoherent motion. Radiology. 177:1990;407-414.
41. Weis J., Budinsky L. Simulation of the influence of magnetic field inhomogeneity and distortion correction in MR imaging. Magn. Reson. Imaging. 8:1990;483-489.
42. Woods R.P., Grafton S.T., Watson J.D.G., Sicotte N.L., Mazziotta J.C. Automated image registration II. Intersubject validation of linear and nonlinear models . J. Comput. Assist. Tomogr. 22:(1):1998;153-165.
43. Wright I.C., McGuire P.K., Poline J.-B., Travere J.M., Murray C.D., Frith C.D., Frackowiak R.S.J., Friston K.J. A voxel-based method for the statistical analysis of gray and white matter density applied to schizophrenia. NeuroImage. 2:1995;244-252.