메뉴 건너뛰기




Volumn 25, Issue 12, 2015, Pages 1886-1892

Replication timing is regulated by the number of MCMs loaded at origins

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; HELICASE; MCM HELICASE; UNCLASSIFIED DRUG; MINICHROMOSOME MAINTENANCE PROTEIN; PROTEIN BINDING;

EID: 84956605207     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.195305.115     Document Type: Article
Times cited : (71)

References (59)
  • 2
    • 84863872155 scopus 로고    scopus 로고
    • Replication timing and its emergence from stochastic processes
    • Bechhoefer J, Rhind N. 2012. Replication timing and its emergence from stochastic processes. Trends Genet 28: 374-381.
    • (2012) Trends Genet , vol.28 , pp. 374-381
    • Bechhoefer, J.1    Rhind, N.2
  • 4
    • 84928925884 scopus 로고    scopus 로고
    • Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly
    • Belsky JA, MacAlpine HK, Lubelsky Y, Hartemink AJ, MacAlpine DM. 2015. Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly. Genes Dev 29: 212-224.
    • (2015) Genes Dev , vol.29 , pp. 212-224
    • Belsky, J.A.1    MacAlpine, H.K.2    Lubelsky, Y.3    Hartemink, A.J.4    MacAlpine, D.M.5
  • 5
    • 10944235448 scopus 로고    scopus 로고
    • ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication
    • Bowers JL, Randell JC, Chen S, Bell SP. 2004. ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication. Mol Cell 16: 967-978.
    • (2004) Mol Cell , vol.16 , pp. 967-978
    • Bowers, J.L.1    Randell, J.C.2    Chen, S.3    Bell, S.P.4
  • 7
    • 36348988518 scopus 로고    scopus 로고
    • DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI
    • Czajkowsky DM, Liu J, Hamlin JL, Shao Z. 2008. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. J Mol Biol 375: 12-19.
    • (2008) J Mol Biol , vol.375 , pp. 12-19
    • Czajkowsky, D.M.1    Liu, J.2    Hamlin, J.L.3    Shao, Z.4
  • 8
    • 84898051697 scopus 로고    scopus 로고
    • Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity
    • Davé A, Cooley C, Garg M, Bianchi A. 2014. Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity. Cell Rep 7: 53-61.
    • (2014) Cell Rep , vol.7 , pp. 53-61
    • Davé, A.1    Cooley, C.2    Garg, M.3    Bianchi, A.4
  • 10
    • 84858053395 scopus 로고    scopus 로고
    • Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases
    • De Piccoli G, Katou Y, Itoh T, Nakato R, Shirahige K, Labib K. 2012. Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases. Mol Cell 45: 696-704.
    • (2012) Mol Cell , vol.45 , pp. 696-704
    • De Piccoli, G.1    Katou, Y.2    Itoh, T.3    Nakato, R.4    Shirahige, K.5    Labib, K.6
  • 11
    • 0028098812 scopus 로고
    • Two steps in the assembly of complexes at yeast replication origins in vivo
    • Diffley JF, Cocker JH, Dowell SJ, Rowley A. 1994. Two steps in the assembly of complexes at yeast replication origins in vivo. Cell 78: 303-316.
    • (1994) Cell , vol.78 , pp. 303-316
    • Diffley, J.F.1    Cocker, J.H.2    Dowell, S.J.3    Rowley, A.4
  • 12
    • 0030951331 scopus 로고    scopus 로고
    • Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast
    • Donovan S, Harwood J, Drury LS, Diffley JF. 1997. Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast. Proc Natl Acad Sci 94: 5611-5616.
    • (1997) Proc Natl Acad Sci , vol.94 , pp. 5611-5616
    • Donovan, S.1    Harwood, J.2    Drury, L.S.3    Diffley, J.F.4
  • 14
    • 0037031834 scopus 로고    scopus 로고
    • MCM2-7 complexes bind chromatin in a distributed pattern surrounding the origin recognition complex in Xenopus egg extracts
    • Edwards MC, Tutter AV, Cvetic C, Gilbert CH, Prokhorova TA, Walter JC. 2002. MCM2-7 complexes bind chromatin in a distributed pattern surrounding the origin recognition complex in Xenopus egg extracts. J Biol Chem 277: 33049-33057.
    • (2002) J Biol Chem , vol.277 , pp. 33049-33057
    • Edwards, M.C.1    Tutter, A.V.2    Cvetic, C.3    Gilbert, C.H.4    Prokhorova, T.A.5    Walter, J.C.6
  • 15
    • 0033516667 scopus 로고    scopus 로고
    • Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex
    • Elrod-Erickson M, Pabo CO. 1999. Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex. J Biol Chem 274: 19281-19285.
    • (1999) J Biol Chem , vol.274 , pp. 19281-19285
    • Elrod-Erickson, M.1    Pabo, C.O.2
  • 16
    • 0026571672 scopus 로고
    • A position effect on the time of replication origin activation in yeast
    • Ferguson BM, Fangman WL. 1992. A position effect on the time of replication origin activation in yeast. Cell 68: 333-339.
    • (1992) Cell , vol.68 , pp. 333-339
    • Ferguson, B.M.1    Fangman, W.L.2
  • 19
    • 84898648796 scopus 로고    scopus 로고
    • A chromatin structure-based model accurately predicts DNA replication timing in human cells
    • Gindin Y, Valenzuela MS, Aladjem MI, Meltzer PS, Bilke S. 2014. A chromatin structure-based model accurately predicts DNA replication timing in human cells. Mol Syst Biol 10: 722.
    • (2014) Mol Syst Biol , vol.10 , pp. 722
    • Gindin, Y.1    Valenzuela, M.S.2    Aladjem, M.I.3    Meltzer, P.S.4    Bilke, S.5
  • 22
    • 58149202426 scopus 로고    scopus 로고
    • Cell cycle analysis of budding yeast using SYTOX Green
    • Unit 7.23
    • Haase SB. 2004. Cell cycle analysis of budding yeast using SYTOX Green. Curr Protoc Cytom Chapter 7: Unit 7.23. doi: 10.1002/0471142956.cy0723s26.
    • (2004) Curr Protoc Cytom Chapter , vol.7
    • Haase, S.B.1
  • 23
    • 84888432841 scopus 로고    scopus 로고
    • High-resolution replication profiles define the stochastic nature of genome replication initiation and termination
    • Hawkins M, Retkute R, Müller CA, Saner N, Tanaka TU, de Moura AP, Nieduszynski CA. 2013. High-resolution replication profiles define the stochastic nature of genome replication initiation and termination. Cell Rep 5: 1132-1141.
    • (2013) Cell Rep , vol.5 , pp. 1132-1141
    • Hawkins, M.1    Retkute, R.2    Müller, C.A.3    Saner, N.4    Tanaka, T.U.5    De Moura, A.P.6    Nieduszynski, C.A.7
  • 25
    • 84884698163 scopus 로고    scopus 로고
    • A link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast
    • Hoggard T, Shor E, Müller CA, Nieduszynski CA, Fox CA. 2013. A link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast. PLoS Genet 9: e1003798.
    • (2013) PLoS Genet , vol.9 , pp. e1003798
    • Hoggard, T.1    Shor, E.2    Müller, C.A.3    Nieduszynski, C.A.4    Fox, C.A.5
  • 26
    • 65449160972 scopus 로고    scopus 로고
    • Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiæ
    • Knott SR, Viggiani CJ, Tavaré S, Aparicio OM. 2009. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiæ. Genes Dev 23: 1077-1090.
    • (2009) Genes Dev , vol.23 , pp. 1077-1090
    • Knott, S.R.1    Viggiani, C.J.2    Tavaré, S.3    Aparicio, O.M.4
  • 28
    • 77953011587 scopus 로고    scopus 로고
    • MRC1-dependent scaling of the budding yeast DNA replication timing program
    • Koren A, Soifer I, Barkai N. 2010. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res 20: 781-790.
    • (2010) Genome Res , vol.20 , pp. 781-790
    • Koren, A.1    Soifer, I.2    Barkai, N.3
  • 29
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 33
    • 82455164158 scopus 로고    scopus 로고
    • Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
    • Mantiero D, Mackenzie A, Donaldson A, Zegerman P. 2011. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J 30: 4805-4814.
    • (2011) EMBO J , vol.30 , pp. 4805-4814
    • Mantiero, D.1    Mackenzie, A.2    Donaldson, A.3    Zegerman, P.4
  • 34
    • 0028365292 scopus 로고
    • Replicator dominance in a eukaryotic chromosome
    • Marahrens Y, Stillman B. 1994. Replicator dominance in a eukaryotic chromosome. EMBO J 13: 3395-3400.
    • (1994) EMBO J , vol.13 , pp. 3395-3400
    • Marahrens, Y.1    Stillman, B.2
  • 36
    • 84876073691 scopus 로고    scopus 로고
    • Quantitative, genome-wide analysis of eukaryotic replication initiation and termination
    • McGuffee SR, Smith DJ, Whitehouse I. 2013. Quantitative, genome-wide analysis of eukaryotic replication initiation and termination. Mol Cell 50: 123-135.
    • (2013) Mol Cell , vol.50 , pp. 123-135
    • McGuffee, S.R.1    Smith, D.J.2    Whitehouse, I.3
  • 40
    • 84902350415 scopus 로고    scopus 로고
    • Rif1 regulates initiation timing of late replication origins throughout the S. Cerevisiæ genome
    • Peace JM, Ter-Zakarian A, Aparicio OM. 2014. Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiæ genome. PLoS One 9: e98501.
    • (2014) PLoS One , vol.9 , pp. e98501
    • Peace, J.M.1    Ter-Zakarian, A.2    Aparicio, O.M.3
  • 41
    • 0035197623 scopus 로고    scopus 로고
    • Completion of replication map of Saccharomyces cerevisiæ chromosome III
    • Poloumienko A, Dershowitz A, De J, Newlon CS. 2001. Completion of replication map of Saccharomyces cerevisiæ chromosome III. Mol Biol Cell 12: 3317-3327.
    • (2001) Mol Biol Cell , vol.12 , pp. 3317-3327
    • Poloumienko, A.1    Dershowitz, A.2    De J Newlon, C.S.3
  • 42
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • R Core Team. 2014. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.Rproject.org/.
    • (2014) R: A Language and Environment for Statistical Computing
  • 44
    • 50849103022 scopus 로고    scopus 로고
    • An intrinsic checkpoint model for regulation of replication origins
    • Rhind N. 2008. An intrinsic checkpoint model for regulation of replication origins. Cell Cycle 7: 2619-2620.
    • (2008) Cell Cycle , vol.7 , pp. 2619-2620
    • Rhind, N.1
  • 45
    • 84899511001 scopus 로고    scopus 로고
    • The three most important things about origins: Location, location, location
    • Rhind N. 2014. The three most important things about origins: location, location, location. Mol Syst Biol 10: 723.
    • (2014) Mol Syst Biol , vol.10 , pp. 723
    • Rhind, N.1
  • 47
    • 77649233258 scopus 로고    scopus 로고
    • Reconciling stochastic origin firing with defined replication timing
    • Rhind N, Yang SC, Bechhoefer J. 2010. Reconciling stochastic origin firing with defined replication timing. Chromosome Res 18: 35-43.
    • (2010) Chromosome Res , vol.18 , pp. 35-43
    • Rhind, N.1    Yang, S.C.2    Bechhoefer, J.3
  • 49
    • 0022781481 scopus 로고
    • Mutations in ARS1 increase the rate of simple loss of plasmids in Saccharomyces cerevisiæ
    • Strich R, Woontner M, Scott JF. 1986. Mutations in ARS1 increase the rate of simple loss of plasmids in Saccharomyces cerevisiæ. Yeast 2: 169-178.
    • (1986) Yeast , vol.2 , pp. 169-178
    • Strich, R.1    Woontner, M.2    Scott, J.F.3
  • 50
    • 84155171119 scopus 로고    scopus 로고
    • Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing
    • Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H. 2011. Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr Biol 21: 2055-2063.
    • (2011) Curr Biol , vol.21 , pp. 2055-2063
    • Tanaka, S.1    Nakato, R.2    Katou, Y.3    Shirahige, K.4    Araki, H.5
  • 51
    • 77950519650 scopus 로고    scopus 로고
    • Dynamic changes in histone acetylation regulate origins of DNA replication
    • Unnikrishnan A, Gafken PR, Tsukiyama T. 2010. Dynamic changes in histone acetylation regulate origins of DNA replication. Nat Struct Mol Biol 17: 430-437.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 430-437
    • Unnikrishnan, A.1    Gafken, P.R.2    Tsukiyama, T.3
  • 53
    • 61349201535 scopus 로고    scopus 로고
    • Establishing the program of origin firing during S phase in fission yeast
    • Wu PY, Nurse P. 2009. Establishing the program of origin firing during S phase in fission yeast. Cell 136: 852-864.
    • (2009) Cell , vol.136 , pp. 852-864
    • Wu, P.Y.1    Nurse, P.2
  • 55
    • 34547236841 scopus 로고    scopus 로고
    • Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. Cerevisiæ
    • Xu W, Aparicio JG, Aparicio OM, Tavaré S. 2006. Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiæ. BMC Genomics 7: 276.
    • (2006) BMC Genomics , vol.7 , pp. 276
    • Xu, W.1    Aparicio, J.G.2    Aparicio, O.M.3    Tavaré, S.4
  • 56
    • 0036668464 scopus 로고    scopus 로고
    • Mapping of early firing origins on a replication profile of budding yeast
    • Yabuki N, Terashima H, Kitada K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789.
    • (2002) Genes Cells , vol.7 , pp. 781-789
    • Yabuki, N.1    Terashima, H.2    Kitada, K.3
  • 57
    • 77956253770 scopus 로고    scopus 로고
    • Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing
    • Yang SC, Rhind N, Bechhoefer J. 2010. Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing. Mol Syst Biol 6: 404.
    • (2010) Mol Syst Biol , vol.6 , pp. 404
    • Yang, S.C.1    Rhind, N.2    Bechhoefer, J.3
  • 59
    • 0034004129 scopus 로고    scopus 로고
    • Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase
    • Zou L, Stillman B. 2000. Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase. Mol Cell Biol 20: 3086-3096.
    • (2000) Mol Cell Biol , vol.20 , pp. 3086-3096
    • Zou, L.1    Stillman, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.