메뉴 건너뛰기




Volumn 7, Issue , 2016, Pages

SsODN-mediated knock-in with CRISPR-Cas for large genomic regions in zygotes

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME P450 2D6; GUIDE RNA; MESSENGER RNA; OLIGODEOXYNUCLEOTIDE; DIFFERENTIATION ANTIGEN; IMMUNOGLOBULIN RECEPTOR; OLIGODEOXYRIBONUCLEOTIDE; SIRPA PROTEIN, HUMAN;

EID: 84955569113     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms10431     Document Type: Article
Times cited : (283)

References (51)
  • 1
    • 84892678484 scopus 로고    scopus 로고
    • Gene targeting technologies in rats: Zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats
    • Mashimo, T. Gene targeting technologies in rats: zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats. Dev. Growth Differ. 56, 46-52 (2014).
    • (2014) Dev. Growth Differ. , vol.56 , pp. 46-52
    • Mashimo, T.1
  • 2
    • 84898778301 scopus 로고    scopus 로고
    • A guide to genome engineering with programmable nucleases
    • Kim, H. & Kim, J. S. A guide to genome engineering with programmable nucleases. Nat. Rev. Genet. 15, 321-334 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 321-334
    • Kim, H.1    Kim, J.S.2
  • 3
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu, P. D., Lander, E. S. & Zhang, F. Development and applications of CRISPR-Cas9 for genome engineering. Cell 157, 1262-1278 (2014).
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 4
    • 84902185906 scopus 로고    scopus 로고
    • Genome engineering with targetable nucleases
    • Carroll, D. Genome engineering with targetable nucleases. Annu. Rev. Biochem. 83, 409-439 (2014).
    • (2014) Annu. Rev. Biochem. , vol.83 , pp. 409-439
    • Carroll, D.1
  • 5
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-Cas systems for editing, regulating and targeting genomes
    • Sander, J. D. & Joung, J. K. CRISPR-Cas systems for editing, regulating and targeting genomes. Nat. Biotechnol. 32, 347-355 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 6
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali, P., Esvelt, K. M. & Church, G. M. Cas9 as a versatile tool for engineering biology. Nat. Methods 10, 957-963 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 7
    • 84883819602 scopus 로고    scopus 로고
    • Heritable gene targeting in the mouse and rat using a CRISPR-Cas system
    • Li, D. et al. Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat. Biotechnol. 31, 681-683 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 681-683
    • Li, D.1
  • 8
    • 84883779087 scopus 로고    scopus 로고
    • Simultaneous generation and germline transmission of multiple gene mutations in rat using CRISPR-Cas systems
    • Li, W., Teng, F., Li, T. & Zhou, Q. Simultaneous generation and germline transmission of multiple gene mutations in rat using CRISPR-Cas systems. Nat. Biotechnol. 31, 684-686 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 684-686
    • Li, W.1    Teng, F.2    Li, T.3    Zhou, Q.4
  • 9
    • 84887255745 scopus 로고    scopus 로고
    • Heritable gene-targeting with gRNA/Cas9 in rats
    • Hu, X. et al. Heritable gene-targeting with gRNA/Cas9 in rats. Cell Res. 23, 1322-1325 (2013).
    • (2013) Cell Res. , vol.23 , pp. 1322-1325
    • Hu, X.1
  • 10
    • 78651322138 scopus 로고    scopus 로고
    • Targeted integration in rat and mouse embryos with zinc-finger nucleases
    • Cui, X. et al. Targeted integration in rat and mouse embryos with zinc-finger nucleases. Nat. Biotechnol. 29, 64-67 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 64-67
    • Cui, X.1
  • 11
    • 77957005768 scopus 로고    scopus 로고
    • Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases
    • Meyer, M., de Angelis, M. H., Wurst, W. & Kuhn, R. Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases. Proc. Natl Acad. Sci. USA 107, 15022-15026 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 15022-15026
    • Meyer, M.1    De Angelis, M.H.2    Wurst, W.3    Kuhn, R.4
  • 12
    • 84892582306 scopus 로고    scopus 로고
    • Efficient genome engineering by targeted homologous recombination in mouse embryos using transcription activator-like effector nucleases
    • Sommer, D. et al. Efficient genome engineering by targeted homologous recombination in mouse embryos using transcription activator-like effector nucleases. Nat. Commun. 5, 3045 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3045
    • Sommer, D.1
  • 13
    • 84905649363 scopus 로고    scopus 로고
    • Efficient gene targeting by homology-directed repair in rat zygotes using TALE nucleases
    • Remy, S. et al. Efficient gene targeting by homology-directed repair in rat zygotes using TALE nucleases. Genome Res. 24, 1371-1383 (2014).
    • (2014) Genome Res. , vol.24 , pp. 1371-1383
    • Remy, S.1
  • 14
    • 84908365348 scopus 로고    scopus 로고
    • Generation of eGFP and Cre knockin rats by CRISPR/Cas9
    • Ma, Y. et al. Generation of eGFP and Cre knockin rats by CRISPR/Cas9. FEBS J. 281, 3779-3790 (2014).
    • (2014) FEBS J. , vol.281 , pp. 3779-3790
    • Ma, Y.1
  • 15
    • 84923779856 scopus 로고    scopus 로고
    • CRISPR/Cas-mediated genome editing in the rat via direct injection of one-cell embryos
    • Shao, Y. et al. CRISPR/Cas-mediated genome editing in the rat via direct injection of one-cell embryos. Nat. Protoc. 9, 2493-2512 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 2493-2512
    • Shao, Y.1
  • 16
    • 33747889217 scopus 로고    scopus 로고
    • Differential usage of non-homologous end-joining and homologous recombination in double strand break repair
    • Sonoda, E., Hochegger, H., Saberi, A., Taniguchi, Y. & Takeda, S. Differential usage of non-homologous end-joining and homologous recombination in double strand break repair. DNA Repair (Amst) 5, 1021-1029 (2006).
    • (2006) DNA Repair (Amst) , vol.5 , pp. 1021-1029
    • Sonoda, E.1    Hochegger, H.2    Saberi, A.3    Taniguchi, Y.4    Takeda, S.5
  • 17
    • 38049155945 scopus 로고    scopus 로고
    • Regulation of DNA double-strand break repair pathway choice
    • Shrivastav, M., De Haro, L. P. & Nickoloff, J. A. Regulation of DNA double-strand break repair pathway choice. Cell Res. 18, 134-147 (2008).
    • (2008) Cell Res. , vol.18 , pp. 134-147
    • Shrivastav, M.1    De Haro, L.P.2    Nickoloff, J.A.3
  • 18
    • 84908031939 scopus 로고    scopus 로고
    • Making designer mutants in model organisms
    • Peng, Y. et al. Making designer mutants in model organisms. Development 141, 4042-4054 (2014).
    • (2014) Development , vol.141 , pp. 4042-4054
    • Peng, Y.1
  • 19
    • 33749590905 scopus 로고    scopus 로고
    • Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing
    • Storici, F., Snipe, J. R., Chan, G. K., Gordenin, D. A. & Resnick, M. A. Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing. Mol. Cell. Biol. 26, 7645-7657 (2006).
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 7645-7657
    • Storici, F.1    Snipe, J.R.2    Chan, G.K.3    Gordenin, D.A.4    Resnick, M.A.5
  • 20
    • 77950521498 scopus 로고    scopus 로고
    • Zinc-finger nucleaseinduced gene repair with oligodeoxynucleotides: Wanted and unwanted target locus modifications
    • Radecke, S., Radecke, F., Cathomen, T. & Schwarz, K. Zinc-finger nucleaseinduced gene repair with oligodeoxynucleotides: wanted and unwanted target locus modifications. Mol. Ther. 18, 743-753 (2010).
    • (2010) Mol. Ther. , vol.18 , pp. 743-753
    • Radecke, S.1    Radecke, F.2    Cathomen, T.3    Schwarz, K.4
  • 21
    • 80052292973 scopus 로고    scopus 로고
    • High-frequency genome editing using ssDNA oligonucleotides with zinc-finger nucleases
    • Chen, F. et al. High-frequency genome editing using ssDNA oligonucleotides with zinc-finger nucleases. Nat. Methods 8, 753-755 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 753-755
    • Chen, F.1
  • 22
    • 84874628805 scopus 로고    scopus 로고
    • Direct production of mouse disease models by embryo microinjection of TALENs and oligodeoxynucleotides
    • Wefers, B. et al. Direct production of mouse disease models by embryo microinjection of TALENs and oligodeoxynucleotides. Proc. Natl Acad. Sci. USA 110, 3782-3787 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 3782-3787
    • Wefers, B.1
  • 23
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang, H. et al. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153, 910-918 (2013).
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1
  • 24
    • 84884289608 scopus 로고    scopus 로고
    • One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering
    • Yang, H. et al. One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 154, 1370-1379 (2013).
    • (2013) Cell , vol.154 , pp. 1370-1379
    • Yang, H.1
  • 25
    • 84890050551 scopus 로고    scopus 로고
    • Correction of a genetic disease in mouse via use of CRISPR-Cas9
    • Wu, Y. et al. Correction of a genetic disease in mouse via use of CRISPR-Cas9. Cell Stem Cell 13, 659-662 (2013).
    • (2013) Cell Stem Cell , vol.13 , pp. 659-662
    • Wu, Y.1
  • 26
    • 84903555108 scopus 로고    scopus 로고
    • Allele-specific genome editing and correction of disease-associated phenotypes in rats using the CRISPR-Cas platform
    • Yoshimi, K., Kaneko, T., Voigt, B. & Mashimo, T. Allele-specific genome editing and correction of disease-associated phenotypes in rats using the CRISPR-Cas platform. Nat. Commun. 5, 4240 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4240
    • Yoshimi, K.1    Kaneko, T.2    Voigt, B.3    Mashimo, T.4
  • 27
    • 0033052063 scopus 로고    scopus 로고
    • Cytoplasmic polyadenylation in development and beyond
    • Richter, J. D. Cytoplasmic polyadenylation in development and beyond. Microbiol. Mol. Biol. Rev. 63, 446-456 (1999).
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 446-456
    • Richter, J.D.1
  • 28
    • 41149138114 scopus 로고    scopus 로고
    • Multifunctional deadenylase complexes diversify mRNA control
    • Goldstrohm, A. C. & Wickens, M. Multifunctional deadenylase complexes diversify mRNA control. Nat. Rev. Mol. Cell Biol. 9, 337-344 (2008).
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 337-344
    • Goldstrohm, A.C.1    Wickens, M.2
  • 29
    • 84861911071 scopus 로고    scopus 로고
    • Translational control by changes in poly(A) tail length: Recycling mRNAs
    • Weill, L., Belloc, E., Bava, F. A. & Mendez, R. Translational control by changes in poly(A) tail length: recycling mRNAs. Nat. Struct. Mol. Biol. 19, 577-585 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 577-585
    • Weill, L.1    Belloc, E.2    Bava, F.A.3    Mendez, R.4
  • 30
    • 84874613680 scopus 로고    scopus 로고
    • Obligate ligation-gated recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joining
    • Maresca, M., Lin, V. G., Guo, N. & Yang, Y. Obligate ligation-gated recombination (ObLiGaRe): custom-designed nuclease-mediated targeted integration through nonhomologous end joining. Genome Res. 23, 539-546 (2013).
    • (2013) Genome Res. , vol.23 , pp. 539-546
    • Maresca, M.1    Lin, V.G.2    Guo, N.3    Yang, Y.4
  • 31
    • 84455162074 scopus 로고    scopus 로고
    • Modeling human cytochrome P450 2D6 metabolism and drug-drug interaction by a novel panel of knockout and humanized mouse lines
    • Scheer, N. et al. Modeling human cytochrome P450 2D6 metabolism and drug-drug interaction by a novel panel of knockout and humanized mouse lines. Mol. Pharmacol. 81, 63-72 (2012).
    • (2012) Mol. Pharmacol. , vol.81 , pp. 63-72
    • Scheer, N.1
  • 32
    • 84892642774 scopus 로고    scopus 로고
    • The endogenous substrates of brain CYP2D
    • Wang, X., Li, J., Dong, G. & Yue, J. The endogenous substrates of brain CYP2D. Eur. J. Pharmacol. 724, 211-218 (2014).
    • (2014) Eur. J. Pharmacol. , vol.724 , pp. 211-218
    • Wang, X.1    Li, J.2    Dong, G.3    Yue, J.4
  • 33
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013).
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 34
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013).
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 35
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • Cho, S. W., Kim, S., Kim, J. M. & Kim, J. S. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 31, 230-232 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 36
    • 84911465736 scopus 로고    scopus 로고
    • CRISPR/Cas9-mediated conversion of eGFP-into Gal4-transgenic lines in zebrafish
    • Auer, T. O., Duroure, K., Concordet, J. P. & Del Bene, F. CRISPR/Cas9-mediated conversion of eGFP-into Gal4-transgenic lines in zebrafish. Nat. Protoc. 9, 2823-2840 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 2823-2840
    • Auer, T.O.1    Duroure, K.2    Concordet, J.P.3    Del Bene, F.4
  • 37
    • 84891722219 scopus 로고    scopus 로고
    • Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homologyindependent DNA repair
    • Auer, T. O., Duroure, K., De Cian, A., Concordet, J. P. & Del Bene, F. Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homologyindependent DNA repair. Genome Res. 24, 142-153 (2014).
    • (2014) Genome Res. , vol.24 , pp. 142-153
    • Auer, T.O.1    Duroure, K.2    De Cian, A.3    Concordet, J.P.4    Del Bene, F.5
  • 38
    • 84923105032 scopus 로고    scopus 로고
    • Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9
    • Nakade, S. et al. Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9. Nat. Commun. 5, 5560 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 5560
    • Nakade, S.1
  • 39
    • 84889597147 scopus 로고    scopus 로고
    • Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
    • Sakuma, T. et al. Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity. Sci. Rep. 3, 3379 (2013).
    • (2013) Sci. Rep. , vol.3 , pp. 3379
    • Sakuma, T.1
  • 40
    • 84895536932 scopus 로고    scopus 로고
    • Generation of TALEN-mediated GRdim knock-in rats by homologous recombination
    • Ponce de Leon, V., Merillat, A. M., Tesson, L., Anegon, I. & Hummler, E. Generation of TALEN-mediated GRdim knock-in rats by homologous recombination. PLoS ONE 9, e88146 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e88146
    • Ponce De Leon, V.1    Merillat, A.M.2    Tesson, L.3    Anegon, I.4    Hummler, E.5
  • 41
    • 84888433920 scopus 로고    scopus 로고
    • Human antibody expression in transgenic rats: Comparison of chimeric IgH loci with human VH, D and JH but bearing different rat C-gene regions
    • Ma, B. et al. Human antibody expression in transgenic rats: comparison of chimeric IgH loci with human VH, D and JH but bearing different rat C-gene regions. J. Immunol. Methods 400-401, 78-86 (2013).
    • (2013) J. Immunol. Methods 400 , vol.401 , pp. 78-86
    • Ma, B.1
  • 42
    • 0034220360 scopus 로고    scopus 로고
    • Generation of transgenic rats with YACs and BACs: Preparation procedures and integrity of microinjected DNA
    • Takahashi, R. et al. Generation of transgenic rats with YACs and BACs: preparation procedures and integrity of microinjected DNA. Exp. Anim. 49, 229-233 (2000).
    • (2000) Exp. Anim. , vol.49 , pp. 229-233
    • Takahashi, R.1
  • 43
    • 74949133880 scopus 로고    scopus 로고
    • Targeted chromosomal deletions in human cells using zinc finger nucleases
    • Lee, H. J., Kim, E. & Kim, J. S. Targeted chromosomal deletions in human cells using zinc finger nucleases. Genome Res. 20, 81-89 (2010).
    • (2010) Genome Res. , vol.20 , pp. 81-89
    • Lee, H.J.1    Kim, E.2    Kim, J.S.3
  • 44
    • 84905388288 scopus 로고    scopus 로고
    • Characterization of genomic deletion efficiency mediated by clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells
    • Canver, M. C. et al. Characterization of genomic deletion efficiency mediated by clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells. J. Biol. Chem. 289, 21312-21324 (2014).
    • (2014) J. Biol. Chem. , vol.289 , pp. 21312-21324
    • Canver, M.C.1
  • 45
    • 33749037701 scopus 로고    scopus 로고
    • Mechanism of homologous recombination: Mediators and helicases take on regulatory functions
    • Sung, P. & Klein, H. Mechanism of homologous recombination: mediators and helicases take on regulatory functions. Nat. Rev. Mol. Cell Biol. 7, 739-750 (2006).
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 739-750
    • Sung, P.1    Klein, H.2
  • 46
    • 84903142681 scopus 로고    scopus 로고
    • A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy
    • Liu, C. et al. A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy. Nucleic Acids Res. 42, 6106-6127 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 6106-6127
    • Liu, C.1
  • 47
    • 84897571308 scopus 로고    scopus 로고
    • Poly(A)-tail profiling reveals an embryonic switch in translational control
    • Subtelny, A. O., Eichhorn, S. W., Chen, G. R., Sive, H. & Bartel, D. P. Poly(A)-tail profiling reveals an embryonic switch in translational control. Nature 508, 66-71 (2014).
    • (2014) Nature , vol.508 , pp. 66-71
    • Subtelny, A.O.1    Eichhorn, S.W.2    Chen, G.R.3    Sive, H.4    Bartel, D.P.5
  • 48
    • 0032101696 scopus 로고    scopus 로고
    • Meiotic maturation in Xenopus requires polyadenylation of multiple mRNAs
    • Barkoff, A., Ballantyne, S. & Wickens, M. Meiotic maturation in Xenopus requires polyadenylation of multiple mRNAs. EMBO J. 17, 3168-3175 (1998).
    • (1998) EMBO J. , vol.17 , pp. 3168-3175
    • Barkoff, A.1    Ballantyne, S.2    Wickens, M.3
  • 49
    • 0028604498 scopus 로고
    • Coordinate initiation of Drosophila development by regulated polyadenylation of maternal messenger RNAs
    • Salles, F. J., Lieberfarb, M. E., Wreden, C., Gergen, J. P. & Strickland, S. Coordinate initiation of Drosophila development by regulated polyadenylation of maternal messenger RNAs. Science 266, 1996-1999 (1994).
    • (1994) Science , vol.266 , pp. 1996-1999
    • Salles, F.J.1    Lieberfarb, M.E.2    Wreden, C.3    Gergen, J.P.4    Strickland, S.5
  • 50
    • 27744480074 scopus 로고    scopus 로고
    • Noninvasive visualization of molecular events in the mammalian zygote
    • Yamagata, K. et al. Noninvasive visualization of molecular events in the mammalian zygote. Genesis 43, 71-79 (2005).
    • (2005) Genesis , vol.43 , pp. 71-79
    • Yamagata, K.1
  • 51
    • 84890014631 scopus 로고    scopus 로고
    • Efficient generation of large-scale genome-modified mice using gRNA and CAS9 endonuclease
    • Fujii, W., Kawasaki, K., Sugiura, K. & Naito, K. Efficient generation of large-scale genome-modified mice using gRNA and CAS9 endonuclease. Nucleic Acids Res. 41, e187 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. e187
    • Fujii, W.1    Kawasaki, K.2    Sugiura, K.3    Naito, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.