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Volumn 16, Issue 12, 2015, Pages 727-741

The expanding world of small RNAs in plants

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; COMPLEMENTARY RNA; DICER; MICRORNA; PLANT DNA; PLANT RNA; RNA DIRECTED RNA POLYMERASE; RNA POLYMERASE II; SMALL INTERFERING RNA; VEGETABLE PROTEIN; RIBONUCLEASE III; SMALL CYTOPLASMIC RNA;

EID: 84948069527     PISSN: 14710072     EISSN: 14710080     Source Type: Journal    
DOI: 10.1038/nrm4085     Document Type: Review
Times cited : (724)

References (178)
  • 1
    • 84877677064 scopus 로고    scopus 로고
    • Classification and comparison of small RNAs from plants
    • Axtell M. J. Classification, and comparison of small RNAs from plants. Annu. Rev. Plant Biol. 64, 137-159 (2013
    • (2013) Annu. Rev. Plant Biol , vol.64 , pp. 137-159
    • Axtell, M.J.1
  • 2
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing, and DNA methylation patterning
    • Henderson I. R., et al. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing, and DNA methylation patterning. Nat. Genet. 38, 721-725 (2006
    • (2006) Nat. Genet , vol.38 , pp. 721-725
    • Henderson, I.R.1
  • 3
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes, and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli V., Mallory A. C., Bartel D. P., & Vaucheret H. Partially redundant functions of Arabidopsis DICER-like enzymes, and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol. 15, 1494-1500 (2005
    • (2005) Curr. Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 4
    • 84873606896 scopus 로고    scopus 로고
    • Evolution of animal, and plant Dicers: Early parallel duplications, and recurrent adaptation of antiviral RNA binding in plants
    • Mukherjee K., Campos H., & Kolaczkowski B. Evolution of animal, and plant Dicers: early parallel duplications, and recurrent adaptation of antiviral RNA binding in plants. Mol. Biol. Evol. 30, 627-641 (2013
    • (2013) Mol. Biol. Evol , vol.30 , pp. 627-641
    • Mukherjee, K.1    Campos, H.2    Kolaczkowski, B.3
  • 6
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: Matchmaking for Argonautes
    • Czech B., & Hannon G. J. Small RNA sorting: matchmaking for Argonautes. Nat. Rev. Genet. 12, 19-31 (2010
    • (2010) Nat. Rev. Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 7
    • 79960186717 scopus 로고    scopus 로고
    • The inside-out mechanism of dicers from budding yeasts
    • Weinberg D. E., Nakanishi K., Patel D. J., & Bartel D. P. The inside-out mechanism of Dicers from budding yeasts. Cell 146, 262-276 (2011
    • (2011) Cell , vol.146 , pp. 262-276
    • Weinberg, D.E.1    Nakanishi, K.2    Patel, D.J.3    Bartel, D.P.4
  • 8
    • 84899741616 scopus 로고    scopus 로고
    • The diversity, biogenesis, and activities of endogenous silencing small rnas in arabidopsis
    • Bologna N. G., & Voinnet O. The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis. Annu. Rev. Plant Biol. 65, 473-503 (2014
    • (2014) Annu. Rev. Plant Biol , vol.65 , pp. 473-503
    • Bologna, N.G.1    Voinnet, O.2
  • 9
    • 78649806773 scopus 로고    scopus 로고
    • MicroRNAs prevent precocious gene expression, and enable pattern formation during plant embryogenesis
    • Nodine M. D., & Bartel D. P. MicroRNAs prevent precocious gene expression, and enable pattern formation during plant embryogenesis. Genes Dev. 24, 2678-2692 (2010
    • (2010) Genes Dev , vol.24 , pp. 2678-2692
    • Nodine, M.D.1    Bartel, D.P.2
  • 10
    • 0036834508 scopus 로고    scopus 로고
    • Dicer like1 blind men, and elephants in arabidopsis development
    • Schauer S. E., Jacobsen S. E., Meinke D. W., & Ray A. DICER LIKE1: blind men, and elephants in Arabidopsis development. Trends Plant Sci. 7, 487-491 (2002
    • (2002) Trends Plant Sci , vol.7 , pp. 487-491
    • Schauer, S.E.1    Jacobsen, S.E.2    Meinke, D.W.3    Ray, A.4
  • 11
    • 33644795388 scopus 로고    scopus 로고
    • Loss of function of osdcl1 affects microrna accumulation, and causes developmental defects in rice
    • Liu B., et al. Loss of function of OsDCL1 affects microRNA accumulation, and causes developmental defects in rice. Plant Physiol. 139, 296-305 (2005
    • (2005) Plant Physiol , vol.139 , pp. 296-305
    • Liu, B.1
  • 12
    • 84961289490 scopus 로고    scopus 로고
    • The dicer like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence, and vegetative growth in maize
    • Thompson B. E., et al. The dicer like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence, and vegetative growth in maize. Plant Cell 26, 4702-4717 (2014
    • (2014) Plant Cell , vol.26 , pp. 4702-4717
    • Thompson, B.E.1
  • 13
    • 79953086307 scopus 로고    scopus 로고
    • Evolution and functional diversification of MIRNA genes
    • Cuperus J. T., Fahlgren N., & Carrington J. C. Evolution, and functional diversification of MIRNA genes. Plant Cell 23, 431-442 (2011
    • (2011) Plant Cell , vol.23 , pp. 431-442
    • Cuperus, J.T.1    Fahlgren, N.2    Carrington, J.C.3
  • 14
    • 34547115664 scopus 로고    scopus 로고
    • High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth, and death of MIRNA genes
    • Fahlgren N., et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth, and death of MIRNA genes. PLoS ONE 2, e219 (2007
    • (2007) Plos One , vol.2 , pp. e219
    • Fahlgren, N.1
  • 15
    • 78650514497 scopus 로고    scopus 로고
    • SiRNAs from miRNA sites mediate DNA methylation of target genes
    • Chellappan P., et al. siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Res. 38, 6883-6894 (2010
    • (2010) Nucleic Acids Res , vol.38 , pp. 6883-6894
    • Chellappan, P.1
  • 16
    • 56649102410 scopus 로고    scopus 로고
    • Evolution of Arabidopsis MIR genes generates novel microRNA classes
    • Vazquez F., Blevins T., Ailhas J., Boller T., & Meins F. Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res. 36, 6429-6438 (2008
    • (2008) Nucleic Acids Res , vol.36 , pp. 6429-6438
    • Vazquez, F.1    Blevins, T.2    Ailhas, J.3    Boller, T.4    Meins, F.5
  • 17
    • 77951974552 scopus 로고    scopus 로고
    • DNA methylation mediated by a microRNA pathway
    • Wu L., et al. DNA methylation mediated by a microRNA pathway. Mol. Cell 38, 465-475 (2010
    • (2010) Mol. Cell , vol.38 , pp. 465-475
    • Wu, L.1
  • 18
    • 33845688601 scopus 로고    scopus 로고
    • A diverse, and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan R., Vaucheret H., Trejo J., & Bartel D. P. A diverse, and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20, 3407-3425 (2006
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 19
    • 61449126060 scopus 로고    scopus 로고
    • Novel long non-protein coding RNAs involved in Arabidopsis differentiation, and stress responses
    • Ben Amor B., et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation, and stress responses. Genome Res. 19, 57-69 (2009
    • (2009) Genome Res , vol.19 , pp. 57-69
    • Ben Amor, B.1
  • 20
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in arabidopsis thaliana
    • Allen E., et al. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36, 1282-1290 (2004
    • (2004) Nat. Genet , vol.36 , pp. 1282-1290
    • Allen, E.1
  • 21
    • 77953214518 scopus 로고    scopus 로고
    • MicroRNA gene evolution in Arabidopsis lyrata, and Arabidopsis thaliana
    • Fahlgren N., et al. MicroRNA gene evolution in Arabidopsis lyrata, and Arabidopsis thaliana. Plant Cell 22, 1074-1089 (2010
    • (2010) Plant Cell , vol.22 , pp. 1074-1089
    • Fahlgren, N.1
  • 22
    • 79955379930 scopus 로고    scopus 로고
    • Vive la différence: Biogenesis, and evolution of microRNAs in plants, and animals
    • Axtell M. J., Westholm J. O., & Lai E. C. Vive la différence: biogenesis, and evolution of microRNAs in plants, and animals. Genome Biol. 12, 221 (2011
    • (2011) Genome Biol , vol.12 , pp. 221
    • Axtell, M.J.1    Westholm, J.O.2    Lai, E.C.3
  • 23
    • 42449099982 scopus 로고    scopus 로고
    • Dual coding of siRNAs, and miRNAs by plant transposable elements
    • Piriyapongsa J., & Jordan I. K. Dual coding of siRNAs, and miRNAs by plant transposable elements. RNA 14, 814-821 (2008
    • (2008) RNA , vol.14 , pp. 814-821
    • Piriyapongsa, J.1    Jordan, I.K.2
  • 24
    • 83355173057 scopus 로고    scopus 로고
    • Evolution of microrna genes in oryza sativa, and arabidopsis thaliana: An update of the inverted duplication model
    • Zhang Y., Jiang W. K., & Gao L. Z. Evolution of microRNA genes in Oryza sativa, and Arabidopsis thaliana: an update of the inverted duplication model. PLoS ONE 6, e28073 (2011
    • (2011) Plos One , vol.6 , pp. e28073
    • Zhang, Y.1    Jiang, W.K.2    Gao, L.Z.3
  • 25
    • 0037224921 scopus 로고    scopus 로고
    • A biochemical framework for RNA silencing in plants
    • Tang G., Reinhart B. J., Bartel D. P., & Zamore P. D. A biochemical framework for RNA silencing in plants. Genes Dev. 17, 49-63 (2003
    • (2003) Genes Dev , vol.17 , pp. 49-63
    • Tang, G.1    Reinhart, B.J.2    Bartel, D.P.3    Zamore, P.D.4
  • 26
    • 34447498668 scopus 로고    scopus 로고
    • Transitivity in arabidopsis can be primed, requires the redundant action of the antiviral dicer-like 4, and dicer-like 2, and is compromised by viral-encoded suppressor proteins
    • Moissiard G., Parizotto E. A., Himber C., & Voinnet O. Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4, and Dicer-like 2, and is compromised by viral-encoded suppressor proteins. RNA 13, 1268-1278 (2007
    • (2007) RNA , vol.13 , pp. 1268-1278
    • Moissiard, G.1    Parizotto, E.A.2    Himber, C.3    Voinnet, O.4
  • 27
    • 69549127823 scopus 로고    scopus 로고
    • Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications, and possible losses before, and after the divergence of major eukaryotic groups
    • Zong J., Yao X., Yin J., Zhang D., & Ma H. Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications, and possible losses before, and after the divergence of major eukaryotic groups. Gene 447, 29-39 (2009
    • (2009) Gene , vol.447 , pp. 29-39
    • Zong, J.1    Yao, X.2    Yin, J.3    Zhang, D.4    Ma, H.5
  • 28
    • 77950367420 scopus 로고    scopus 로고
    • Arabidopsis RNA-dependent RNA polymerases, and dicer-like proteins in antiviral defense, and small interfering RNA biogenesis during turnip mosaic virus infection
    • Garcia-Ruiz H., et al. Arabidopsis RNA-dependent RNA polymerases, and dicer-like proteins in antiviral defense, and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell 22, 481-496 (2010
    • (2010) Plant Cell , vol.22 , pp. 481-496
    • Garcia-Ruiz, H.1
  • 29
    • 84872533627 scopus 로고    scopus 로고
    • RNA interference in the nucleus: Roles for small RNAs in transcription, epigenetics, and beyond
    • Castel S. E., & Martienssen R. A. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics, and beyond. Nat. Rev. Genet. 14, 100-112 (2013
    • (2013) Nat. Rev. Genet , vol.14 , pp. 100-112
    • Castel, S.E.1    Martienssen, R.A.2
  • 30
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements, and the epigenetic regulation of the genome
    • Slotkin R. K., & Martienssen R. Transposable elements, and the epigenetic regulation of the genome. Nat. Rev. Genet. 8, 272-285 (2007
    • (2007) Nat. Rev. Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 31
    • 84904506347 scopus 로고    scopus 로고
    • RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
    • Matzke M. A., & Mosher R. A. RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat. Rev. Genet. 15, 394-408 (2014
    • (2014) Nat. Rev. Genet , vol.15 , pp. 394-408
    • Matzke, M.A.1    Mosher, R.A.2
  • 32
    • 84920741570 scopus 로고    scopus 로고
    • Respective contributions of Arabidopsis DCL2, and DCL4 to RNA silencing
    • Parent J. S., Bouteiller N., Elmayan T., & Vaucheret H. Respective contributions of Arabidopsis DCL2, and DCL4 to RNA silencing. Plant J. 81, 223-232 (2015
    • (2015) Plant J. , vol.81 , pp. 223-232
    • Parent, J.S.1    Bouteiller, N.2    Elmayan, T.3    Vaucheret, H.4
  • 33
    • 76249093088 scopus 로고    scopus 로고
    • RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
    • Wang X. B., et al. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 107, 484-489 (2010
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 484-489
    • Wang, X.B.1
  • 34
    • 24944491201 scopus 로고    scopus 로고
    • A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
    • Yoshikawa M., Peragine A., Park M. Y., & Poethig R. S. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 19, 2164-2175 (2005
    • (2005) Genes Dev , vol.19 , pp. 2164-2175
    • Yoshikawa, M.1    Peragine, A.2    Park, M.Y.3    Poethig, R.S.4
  • 35
    • 20244378840 scopus 로고    scopus 로고
    • Specific interactions between Dicer-like proteins, and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana
    • Hiraguri A., et al. Specific interactions between Dicer-like proteins, and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol. Biol. 57, 173-188 (2005
    • (2005) Plant Mol. Biol , vol.57 , pp. 173-188
    • Hiraguri, A.1
  • 36
    • 79251485649 scopus 로고    scopus 로고
    • Modifications of small RNAs, and their associated proteins
    • Kim Y. K., Heo I., & Kim V. N. Modifications of small RNAs, and their associated proteins. Cell 143, 703-709 (2010
    • (2010) Cell , vol.143 , pp. 703-709
    • Kim, Y.K.1    Heo, I.2    Kim, V.N.3
  • 37
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs, and siRNAs from a 3 end uridylation activity in Arabidopsis
    • Li J., Yang Z., Yu B., Liu J., & Chen X. Methylation protects miRNAs, and siRNAs from a 3? end uridylation activity in Arabidopsis. Curr. Biol. 15, 1501-1507 (2005
    • (2005) Curr. Biol , vol.15 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 38
    • 84883162907 scopus 로고    scopus 로고
    • Plant micrornas display differential 3 truncation, and tailing modifications that are argonaute1 dependent, and conserved across species
    • Zhai J., et al. Plant microRNAs display differential 3? truncation, and tailing modifications that are ARGONAUTE1 dependent, and conserved across species. Plant Cell 25, 2417-2428 (2013
    • (2013) Plant Cell , vol.25 , pp. 2417-2428
    • Zhai, J.1
  • 39
    • 13644256193 scopus 로고    scopus 로고
    • Methylation as a crucial step in plant microRNA biogenesis
    • Yu B., et al. Methylation as a crucial step in plant microRNA biogenesis. Science 307, 932-935 (2005
    • (2005) Science , vol.307 , pp. 932-935
    • Yu, B.1
  • 40
    • 84860301401 scopus 로고    scopus 로고
    • The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation
    • Zhao Y., et al. The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Curr. Biol. 22, 689-694 (2012
    • (2012) Curr. Biol , vol.22 , pp. 689-694
    • Zhao, Y.1
  • 41
    • 84860307087 scopus 로고    scopus 로고
    • Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis
    • Ren G., Chen X., & Yu B. Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis. Curr. Biol. 22, 695-700 (2012
    • (2012) Curr. Biol , vol.22 , pp. 695-700
    • Ren, G.1    Chen, X.2    Yu, B.3
  • 42
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran V., & Chen X. Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321, 1490-1492 (2008
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 43
    • 0036339614 scopus 로고    scopus 로고
    • HEN1 functions pleiotropically in Arabidopsis development, and acts in C function in the flower
    • Chen X., Liu J., Cheng Y., & Jia D. HEN1 functions pleiotropically in Arabidopsis development, and acts in C function in the flower. Development 129, 1085-1094 (2002
    • (2002) Development , vol.129 , pp. 1085-1094
    • Chen, X.1    Liu, J.2    Cheng, Y.3    Jia, D.4
  • 44
    • 77649255166 scopus 로고    scopus 로고
    • Uridylation of mature miRNAs, and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas
    • Ibrahim F., et al. Uridylation of mature miRNAs, and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas. Proc. Natl Acad. Sci. USA 107, 3906-3911 (2010
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 3906-3911
    • Ibrahim, F.1
  • 45
    • 80052527459 scopus 로고    scopus 로고
    • Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    • Wyman S. K., et al. Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Res. 21, 1450-1461 (2011
    • (2011) Genome Res , vol.21 , pp. 1450-1461
    • Wyman, S.K.1
  • 46
    • 70349820140 scopus 로고    scopus 로고
    • Lin28 recruits the TUTase Zcchc11 to inhibit let 7 maturation in mouse embryonic stem cells
    • Hagan J. P., Piskounova E., & Gregory R. I. Lin28 recruits the TUTase Zcchc11 to inhibit let 7 maturation in mouse embryonic stem cells. Nat. Struct. Mol. Biol. 16, 1021-1025 (2009
    • (2009) Nat. Struct. Mol. Biol , vol.16 , pp. 1021-1025
    • Hagan, J.P.1    Piskounova, E.2    Gregory, R.I.3
  • 47
    • 68749102148 scopus 로고    scopus 로고
    • TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation
    • Heo I., et al. TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation. Cell 138, 696-708 (2009
    • (2009) Cell , vol.138 , pp. 696-708
    • Heo, I.1
  • 48
    • 84868153864 scopus 로고    scopus 로고
    • Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let 7 microRNAs
    • Heo I., et al. Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let 7 microRNAs. Cell 151, 521-532 (2012
    • (2012) Cell , vol.151 , pp. 521-532
    • Heo, I.1
  • 49
    • 70349442298 scopus 로고    scopus 로고
    • CDE 1 affects chromosome segregation through uridylation of CSR 1 bound siRNAs
    • Van Wolfswinkel J. C., et al. CDE 1 affects chromosome segregation through uridylation of CSR 1 bound siRNAs. Cell 139, 135-148 (2009
    • (2009) Cell , vol.139 , pp. 135-148
    • Van Wolfswinkel, J.C.1
  • 50
    • 84863631177 scopus 로고    scopus 로고
    • PiRNAs initiate an epigenetic memory of nonself RNA in the C elegans germline
    • Shirayama M., et al. piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell 150, 65-77 (2012
    • (2012) Cell , vol.150 , pp. 65-77
    • Shirayama, M.1
  • 51
    • 84890836064 scopus 로고    scopus 로고
    • Protection of germline gene expression by the C elegans Argonaute CSR 1
    • Wedeles C. J., Wu M. Z., & Claycomb J. M. Protection of germline gene expression by the C. elegans Argonaute CSR 1. Dev. Cell 27, 664-671 (2013
    • (2013) Dev. Cell , vol.27 , pp. 664-671
    • Wedeles, C.J.1    Wu, M.Z.2    Claycomb, J.M.3
  • 52
    • 84899654405 scopus 로고    scopus 로고
    • Methylation protects microRNAs from an AGO1 associated activity that uridylates 5′ RNA fragments generated by AGO1 cleavage
    • Ren G., et al. Methylation protects microRNAs from an AGO1 associated activity that uridylates 5′ RNA fragments generated by AGO1 cleavage. Proc. Natl Acad. Sci. USA 111, 6365-6370 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 6365-6370
    • Ren, G.1
  • 53
    • 84930372546 scopus 로고    scopus 로고
    • Synergistic, and independent actions of multiple terminal nucleotidyl transferases in the 3 tailing of small RNAs in Arabidopsis
    • Wang X., et al. Synergistic, and independent actions of multiple terminal nucleotidyl transferases in the 3? tailing of small RNAs in Arabidopsis. PLoS Genet. 11, e1005091 (2015
    • (2015) PLoS Genet , vol.11 , pp. e1005091
    • Wang, X.1
  • 54
    • 84930348374 scopus 로고    scopus 로고
    • Distinct, and cooperative activities of HESO1, and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis
    • Tu B., et al. Distinct, and cooperative activities of HESO1, and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. PLoS Genet. 11, e1005119 (2015
    • (2015) PLoS Genet , vol.11 , pp. e1005119
    • Tu, B.1
  • 55
    • 84888418863 scopus 로고    scopus 로고
    • HAMR: High-throughput annotation of modified ribonucleotides
    • Ryvkin P., et al. HAMR: high-throughput annotation of modified ribonucleotides. RNA 19, 1684-1692 (2013
    • (2013) RNA , vol.19 , pp. 1684-1692
    • Ryvkin, P.1
  • 56
    • 65849172363 scopus 로고    scopus 로고
    • Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
    • Ebhardt H. A., et al. Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res. 37, 2461-2470 (2009
    • (2009) Nucleic Acids Res , vol.37 , pp. 2461-2470
    • Ebhardt, H.A.1
  • 57
    • 65449131636 scopus 로고    scopus 로고
    • Bioinformatics analysis suggests base modifications of tRNAs, and miRNAs in Arabidopsis thaliana
    • Iida K., Jin H., & Zhu J. K. Bioinformatics analysis suggests base modifications of tRNAs, and miRNAs in Arabidopsis thaliana. BMC Genomics 10, 155 (2009
    • (2009) BMC Genomics , vol.10 , pp. 155
    • Iida, K.1    Jin, H.2    Zhu, J.K.3
  • 58
    • 84920198394 scopus 로고    scopus 로고
    • Comparative expression profiling of mirnas between the cytoplasmic male sterile line meixianga, and its maintainer line meixiangb during rice anther development
    • Yan J., Zhang H., Zheng Y., & Ding Y. Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA, and its maintainer line MeixiangB during rice anther development. Planta 241, 109-123 (2015
    • (2015) Planta , vol.241 , pp. 109-123
    • Yan, J.1    Zhang, H.2    Zheng, Y.3    Ding, Y.4
  • 59
    • 84899033539 scopus 로고    scopus 로고
    • The contribution of pseudouridine to stabilities, and structure of RNAs
    • Kierzek E., et al. The contribution of pseudouridine to stabilities, and structure of RNAs. Nucleic Acids Res. 42, 3492-3501 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. 3492-3501
    • Kierzek, E.1
  • 60
    • 84922180958 scopus 로고    scopus 로고
    • Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast, and human cells
    • Carlile T. M., et al. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast, and human cells. Nature 515, 143-146 (2014
    • (2014) Nature , vol.515 , pp. 143-146
    • Carlile, T.M.1
  • 61
    • 84907527348 scopus 로고    scopus 로고
    • Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA, and mRNA
    • Schwartz S., et al. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA, and mRNA. Cell 159, 148-162 (2014
    • (2014) Cell , vol.159 , pp. 148-162
    • Schwartz, S.1
  • 62
    • 0029790980 scopus 로고    scopus 로고
    • The yeast protein Arc1p binds to tRNA, and functions as a cofactor for the methionyl-, and glutamyl-tRNA synthetases
    • Simos G., et al. The yeast protein Arc1p binds to tRNA, and functions as a cofactor for the methionyl-, and glutamyl-tRNA synthetases. EMBO J. 15, 5437-5448 (1996
    • (1996) EMBO J. , vol.15 , pp. 5437-5448
    • Simos, G.1
  • 63
    • 0034556628 scopus 로고    scopus 로고
    • Cloning, and characterization of the Schizosaccharomyces pombe tRNA: Pseudouridine synthase Pus1p
    • Hellmuth K., et al. Cloning, and characterization of the Schizosaccharomyces pombe tRNA: pseudouridine synthase Pus1p. Nucleic Acids Res. 28, 4604-4610 (2000
    • (2000) Nucleic Acids Res , vol.28 , pp. 4604-4610
    • Hellmuth, K.1
  • 64
    • 82955207556 scopus 로고    scopus 로고
    • MicroRNAs as master regulators of the plant NB LRR defense gene family via the production of phased, trans-acting siRNAs
    • Zhai J., et al. MicroRNAs as master regulators of the plant NB LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev. 25, 2540-2553 (2011
    • (2011) Genes Dev , vol.25 , pp. 2540-2553
    • Zhai, J.1
  • 65
    • 84883166485 scopus 로고    scopus 로고
    • Secondary, small interfering RNAs in posttranscriptional regulatory networks
    • Fei Q., Xia R., & Meyers B. C. Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell 25, 2400-2415 (2013
    • (2013) Plant Cell , vol.25 , pp. 2400-2415
    • Fei, Q.1    Xia, R.2    Phased, C.M.B.3
  • 66
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E., Xie Z., Gustafson A. M., & Carrington J. C. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207-221 (2005
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 67
    • 33750440526 scopus 로고    scopus 로고
    • Two-hit trigger for siRNA biogenesis in plants
    • Axtell M. J., Jan C., Rajagopalan R., & Bartel D. P. A. Two-hit trigger for siRNA biogenesis in plants. Cell 127, 565-577 (2006
    • (2006) Cell , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.A.4
  • 68
    • 84857136650 scopus 로고    scopus 로고
    • Plant secondary siRNA production determined by microRNA-duplex structure
    • Manavella P. A., Koenig D., & Weigel D. Plant secondary siRNA production determined by microRNA-duplex structure. Proc. Natl Acad. Sci. USA 109, 2461-2466 (2012
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 2461-2466
    • Manavella, P.A.1    Koenig, D.2    Weigel, D.3
  • 69
    • 33745804463 scopus 로고    scopus 로고
    • MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
    • Ronemus M., Vaughn M. W., & Martienssen R. A. MicroRNA-targeted, and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 18, 1559-1574 (2006
    • (2006) Plant Cell , vol.18 , pp. 1559-1574
    • Ronemus, M.1    Vaughn, M.W.2    Martienssen, R.A.3
  • 70
    • 68149119262 scopus 로고    scopus 로고
    • Clusters, and superclusters of phased small RNAs in the developing inflorescence of rice
    • Johnson C., et al. Clusters, and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res. 19, 1429-1440 (2009
    • (2009) Genome Res , vol.19 , pp. 1429-1440
    • Johnson, C.1
  • 71
    • 84878572794 scopus 로고    scopus 로고
    • Biogenesis and function of rice small RNAs from non-coding RNA precursors
    • Arikit S., Zhai J., & Meyers B. C. Biogenesis, and function of rice small RNAs from non-coding RNA precursors. Curr. Opin. Plant Biol. 16, 170-179 (2013
    • (2013) Curr. Opin. Plant Biol , vol.16 , pp. 170-179
    • Arikit, S.1    Zhai, J.2    Meyers, B.C.3
  • 72
    • 84924308731 scopus 로고    scopus 로고
    • Spatiotemporally dynamic, cell-type-dependent premeiotic, and meiotic phasiRNAs in maize anthers
    • Zhai J., et al. Spatiotemporally dynamic, cell-type-dependent premeiotic, and meiotic phasiRNAs in maize anthers. Proc. Natl Acad. Sci. USA 112, 3146-3151 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 3146-3151
    • Zhai, J.1
  • 73
    • 84864441023 scopus 로고    scopus 로고
    • Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis, and spikelet development
    • Song X., et al. Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis, and spikelet development. Plant J. 71, 378-389 (2012
    • (2012) Plant J. , vol.71 , pp. 378-389
    • Song, X.1
  • 74
    • 84856288115 scopus 로고    scopus 로고
    • Roles of DCL4, and DCL3b in rice phased small RNA biogenesis
    • Song X., et al. Roles of DCL4, and DCL3b in rice phased small RNA biogenesis. Plant J. 69, 462-474 (2012
    • (2012) Plant J. , vol.69 , pp. 462-474
    • Song, X.1
  • 75
    • 84860126087 scopus 로고    scopus 로고
    • A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats, and other mRNAs
    • Shivaprasad P. V., et al. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats, and other mRNAs. Plant Cell 24, 859-874 (2012
    • (2012) Plant Cell , vol.24 , pp. 859-874
    • Shivaprasad, P.V.1
  • 76
    • 84961288187 scopus 로고    scopus 로고
    • An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    • Arikit S., et al. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell 26, 4584-4601 (2014
    • (2014) Plant Cell , vol.26 , pp. 4584-4601
    • Arikit, S.1
  • 77
    • 84897127295 scopus 로고    scopus 로고
    • MiRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
    • Creasey K. M., et al. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature 508, 411-415 (2014
    • (2014) Nature , vol.508 , pp. 411-415
    • Creasey, K.M.1
  • 78
    • 59349118366 scopus 로고    scopus 로고
    • Epigenetic reprogramming, and small RNA silencing of transposable elements in pollen
    • Slotkin R. K., et al. Epigenetic reprogramming, and small RNA silencing of transposable elements in pollen. Cell 136, 461-472 (2009
    • (2009) Cell , vol.136 , pp. 461-472
    • Slotkin, R.K.1
  • 79
    • 84891713248 scopus 로고    scopus 로고
    • Epigenomic consequences of immortalized plant cell suspension culture
    • Tanurdzic M., et al. Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol. 6, e302 (2008
    • (2008) PLoS Biol , vol.6 , pp. e302
    • Tanurdzic, M.1
  • 80
    • 79953746026 scopus 로고    scopus 로고
    • An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
    • Ito H., et al. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 472, 115-119 (2011
    • (2011) Nature , vol.472 , pp. 115-119
    • Ito, H.1
  • 81
    • 55449108640 scopus 로고    scopus 로고
    • Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats
    • May B. P., Lippman Z. B., Fang Y., Spector D. L., & Martienssen R. A. Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet. 1, e79 (2005
    • (2005) PLoS Genet , vol.1 , pp. e79
    • May, B.P.1    Lippman, Z.B.2    Fang, Y.3    Spector, D.L.4    Martienssen, R.A.5
  • 82
    • 84917731599 scopus 로고    scopus 로고
    • Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences
    • Roberts J. T., Cardin S. E., & Borchert G. M. Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences. Mob. Genet. Elements 4, e29255 (2014
    • (2014) Mob. Genet. Elements , vol.4 , pp. e29255
    • Roberts, J.T.1    Cardin, S.E.2    Borchert, G.M.3
  • 83
    • 84874763221 scopus 로고    scopus 로고
    • Stalled spliceosomes are a signal for RNAi-mediated genome defense
    • Dumesic P. A., et al. Stalled spliceosomes are a signal for RNAi-mediated genome defense. Cell 152, 957-968 (2013
    • (2013) Cell , vol.152 , pp. 957-968
    • Dumesic, P.A.1
  • 84
    • 84902117162 scopus 로고    scopus 로고
    • The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing
    • Zhang Z., et al. The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing. Cell 157, 1353-1363 (2014
    • (2014) Cell , vol.157 , pp. 1353-1363
    • Zhang, Z.1
  • 85
    • 80053567859 scopus 로고    scopus 로고
    • Intron splicing suppresses RNA silencing in Arabidopsis
    • Christie M., Croft L. J., & Carroll B. J. Intron splicing suppresses RNA silencing in Arabidopsis. Plant J. 68, 159-167 (2011
    • (2011) Plant J. , vol.68 , pp. 159-167
    • Christie, M.1    Croft, L.J.2    Carroll, B.J.3
  • 86
    • 47249089938 scopus 로고    scopus 로고
    • Dual roles of the nuclear cap-binding complex, and SERRATE in pre-mRNA splicing, and microRNA processing in Arabidopsis thaliana
    • Laubinger S., et al. Dual roles of the nuclear cap-binding complex, and SERRATE in pre-mRNA splicing, and microRNA processing in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 105, 8795-8800 (2008
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 8795-8800
    • Laubinger, S.1
  • 87
    • 84856646524 scopus 로고    scopus 로고
    • Serrate is required for intron suppression of RNA silencing in arabidopsis
    • Christie M., & Carroll B. J. SERRATE is required for intron suppression of RNA silencing in Arabidopsis. Plant Signal. Behav. 6, 2035-2037 (2011
    • (2011) Plant Signal. Behav , vol.6 , pp. 2035-2037
    • Christie, M.1    Carroll, B.J.2
  • 88
    • 84893296046 scopus 로고    scopus 로고
    • The serrate protein is involved in alternative splicing in arabidopsis thaliana
    • Raczynska K. D., et al. The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res. 42, 1224-1244 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. 1224-1244
    • Raczynska, K.D.1
  • 89
    • 84863038938 scopus 로고    scopus 로고
    • The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis
    • Ausin I., Greenberg M. V., Li C. F., & Jacobsen S. E. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics 7, 29-33 (2012
    • (2012) Epigenetics , vol.7 , pp. 29-33
    • Ausin, I.1    Greenberg, M.V.2    Li, C.F.3    Jacobsen, S.E.4
  • 90
    • 84922373670 scopus 로고    scopus 로고
    • Detection of Pol IV/RDR2 dependent transcripts at the genomic scale in Arabidopsis reveals features, and regulation of siRNA biogenesis
    • Li S., et al. Detection of Pol IV/RDR2 dependent transcripts at the genomic scale in Arabidopsis reveals features, and regulation of siRNA biogenesis. Genome Res. 25, 235-245 (2015
    • (2015) Genome Res , vol.25 , pp. 235-245
    • Li, S.1
  • 91
    • 54949147637 scopus 로고    scopus 로고
    • Splicing factors facilitate RNAi-directed silencing in fission yeast
    • Bayne E. H., et al. Splicing factors facilitate RNAi-directed silencing in fission yeast. Science 322, 602-606 (2008
    • (2008) Science , vol.322 , pp. 602-606
    • Bayne, E.H.1
  • 92
    • 76749101560 scopus 로고    scopus 로고
    • Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeast
    • Bernard P., Drogat J., Dheur S., Genier S., & Javerzat J. P. Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeast. Mol. Cell. Biol. 30, 1145-1157 (2010
    • (2010) Mol. Cell. Biol , vol.30 , pp. 1145-1157
    • Bernard, P.1    Drogat, J.2    Dheur, S.3    Genier, S.4    Javerzat, J.P.5
  • 93
    • 77949319206 scopus 로고    scopus 로고
    • Involvement of the spliceosomal U4 small nuclear RNA in heterochromatic gene silencing at fission yeast centromeres
    • Chinen M., Morita M., Fukumura K., & Tani T. Involvement of the spliceosomal U4 small nuclear RNA in heterochromatic gene silencing at fission yeast centromeres. J. Biol. Chem. 285, 5630-5638 (2010
    • (2010) J. Biol. Chem , vol.285 , pp. 5630-5638
    • Chinen, M.1    Morita, M.2    Fukumura, K.3    Tani, T.4
  • 94
    • 84901611020 scopus 로고    scopus 로고
    • The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast
    • Kallgren S. P., et al. The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast. PLoS Genet. 10, e1004334 (2014
    • (2014) PLoS Genet , vol.10 , pp. e1004334
    • Kallgren, S.P.1
  • 95
    • 37849008803 scopus 로고    scopus 로고
    • Arabidopsis FIERY1 XRN2, and XRN3 are endogenous RNA silencing suppressors
    • Gy I., et al. Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell 19, 3451-3461 (2007
    • (2007) Plant Cell , vol.19 , pp. 3451-3461
    • Gy, I.1
  • 96
    • 8344240473 scopus 로고    scopus 로고
    • A link between mRNA turnover, and RNA interference in Arabidopsis
    • Gazzani S., Lawrenson T., Woodward C., Headon D., & Sablowski R. A link between mRNA turnover, and RNA interference in Arabidopsis. Science 306, 1046-1048 (2004
    • (2004) Science , vol.306 , pp. 1046-1048
    • Gazzani, S.1    Lawrenson, T.2    Woodward, C.3    Headon, D.4    Sablowski, R.5
  • 97
    • 84877300996 scopus 로고    scopus 로고
    • Cytoplasmic, and nuclear quality control, and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants
    • Moreno A. B., et al. Cytoplasmic, and nuclear quality control, and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Res. 41, 4699-4708 (2013
    • (2013) Nucleic Acids Res , vol.41 , pp. 4699-4708
    • Moreno, A.B.1
  • 98
    • 84868194698 scopus 로고    scopus 로고
    • The Arabidopsis DCP2 gene is required for proper mRNA turnover, and prevents transgene silencing in Arabidopsis
    • Thran M., Link K., & Sonnewald U. The Arabidopsis DCP2 gene is required for proper mRNA turnover, and prevents transgene silencing in Arabidopsis. Plant J. 72, 368-377 (2012
    • (2012) Plant J. , vol.72 , pp. 368-377
    • Thran, M.1    Link, K.2    Sonnewald, U.3
  • 99
    • 44449142226 scopus 로고    scopus 로고
    • A link between RNA metabolism, and silencing affecting Arabidopsis development
    • Gregory B. D., et al. A link between RNA metabolism, and silencing affecting Arabidopsis development. Dev. Cell 14, 854-866 (2008
    • (2008) Dev. Cell , vol.14 , pp. 854-866
    • Gregory, B.D.1
  • 100
    • 84928755185 scopus 로고    scopus 로고
    • Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis
    • Zhang X., et al. Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis. Science 348, 120-123 (2015
    • (2015) Science , vol.348 , pp. 120-123
    • Zhang, X.1
  • 101
    • 84937152839 scopus 로고    scopus 로고
    • In plants, decapping prevents RDR6 dependent production of small interfering RNAs from endogenous mRNAs
    • Martínez de Alba A. E., et al. In plants, decapping prevents RDR6 dependent production of small interfering RNAs from endogenous mRNAs. Nucleic Acids Res. 43, 2902-2913 (2015
    • (2015) Nucleic Acids Res , vol.43 , pp. 2902-2913
    • Martínez De Alba, A.E.1
  • 102
    • 34249057729 scopus 로고    scopus 로고
    • RNAi-dependent, and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing
    • Bühler M., Haas W., Gygi S. P., & Moazed D. RNAi-dependent, and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing. Cell 129, 707-721 (2007
    • (2007) Cell , vol.129 , pp. 707-721
    • Bühler, M.1    Haas, W.2    Gygi, S.P.3    Moazed, D.4
  • 103
    • 84872958560 scopus 로고    scopus 로고
    • RNAi triggered by specialized machinery silences developmental genes, and retrotransposons
    • Yamanaka S., et al. RNAi triggered by specialized machinery silences developmental genes, and retrotransposons. Nature 493, 557-560 (2013
    • (2013) Nature , vol.493 , pp. 557-560
    • Yamanaka, S.1
  • 104
    • 84921685377 scopus 로고    scopus 로고
    • Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis
    • Cao M., et al. Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis. Proc. Natl Acad. Sci. USA 111, 14613-14618 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 14613-14618
    • Cao, M.1
  • 105
    • 79957761869 scopus 로고    scopus 로고
    • The 21 nucleotide, but not 22 nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative Argonautes in Arabidopsis thaliana
    • Wang X. B., et al. The 21 nucleotide, but not 22 nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative Argonautes in Arabidopsis thaliana. Plant Cell 23, 1625-1638 (2011
    • (2011) Plant Cell , vol.23 , pp. 1625-1638
    • Wang, X.B.1
  • 106
    • 64049086954 scopus 로고    scopus 로고
    • SGS3, and RDR6 interact, and colocalize in cytoplasmic SGS3/RDR6 bodies
    • Kumakura N., et al. SGS3, and RDR6 interact, and colocalize in cytoplasmic SGS3/RDR6 bodies. FEBS Lett. 583, 1261-1266 (2009
    • (2009) FEBS Lett , vol.583 , pp. 1261-1266
    • Kumakura, N.1
  • 107
    • 0001047645 scopus 로고
    • The suppressor-mutator system of control of gene action in maize
    • McClintock B. The suppressor-mutator system of control of gene action in maize. Carnegie Inst. Washington Year Book 57, 415-429 (1958
    • (1958) Carnegie Inst Washington Year Book , vol.57 , pp. 415-429
    • McClintock, B.1
  • 108
    • 84877040915 scopus 로고    scopus 로고
    • The initiation of epigenetic silencing of active transposable elements is triggered by RDR6, and 21-22 nucleotide small interfering RNAs
    • Nuthikattu S., et al. The initiation of epigenetic silencing of active transposable elements is triggered by RDR6, and 21-22 nucleotide small interfering RNAs. Plant Physiol. 162, 116-131 (2013
    • (2013) Plant Physiol , vol.162 , pp. 116-131
    • Nuthikattu, S.1
  • 109
    • 84920441660 scopus 로고    scopus 로고
    • Argonaute 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation
    • McCue A. D., et al. ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation. EMBO J. 34, 20-35 (2015
    • (2015) EMBO J. , vol.34 , pp. 20-35
    • McCue, A.D.1
  • 110
    • 84883454804 scopus 로고    scopus 로고
    • Reconstructing de novo silencing of an active plant retrotransposon
    • Mari-Ordonez A., et al. Reconstructing de novo silencing of an active plant retrotransposon. Nat. Genet. 45, 1029-1039 (2013
    • (2013) Nat. Genet , vol.45 , pp. 1029-1039
    • Mari-Ordonez, A.1
  • 111
    • 77950342461 scopus 로고    scopus 로고
    • The Arabidopsis RNA-directed DNA methylation Argonautes functionally diverge based on their expression, and interaction with target loci
    • Havecker E. R., et al. The Arabidopsis RNA-directed DNA methylation Argonautes functionally diverge based on their expression, and interaction with target loci. Plant Cell 22, 321-334 (2010
    • (2010) Plant Cell , vol.22 , pp. 321-334
    • Havecker, E.R.1
  • 112
    • 77249170184 scopus 로고    scopus 로고
    • Establishing maintaining, and modifying DNA methylation patterns in plants, and animals
    • Law J. A., & Jacobsen S. E. Establishing, maintaining, and modifying DNA methylation patterns in plants, and animals. Nat. Rev. Genet. 11, 204-220 (2010
    • (2010) Nat. Rev. Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 113
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV, and V: Purveyors of non-coding RNA for plant gene silencing
    • Haag J. R., & Pikaard C. S. Multisubunit RNA polymerases IV, and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 12, 483-492 (2011
    • (2011) Nat. Rev. Mol. Cell Biol , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 114
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation DNA methylation, and transcriptional gene silencing
    • Zheng X., Zhu J., Kapoor A., & Zhu J. K. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation, and transcriptional gene silencing. EMBO J. 26, 1691-1701 (2007
    • (2007) EMBO J. , vol.26 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.K.4
  • 115
    • 3042801584 scopus 로고    scopus 로고
    • Chromatin conversations: Mechanisms, and implications of paramutation
    • Chandler V. L., & Stam M. Chromatin conversations: mechanisms, and implications of paramutation. Nat. Rev. Genet. 5, 532-544 (2004
    • (2004) Nat. Rev. Genet , vol.5 , pp. 532-544
    • Chandler, V.L.1    Stam, M.2
  • 116
    • 84869501857 scopus 로고    scopus 로고
    • Paramutation a trans-homolog interaction affecting heritable gene regulation
    • Hollick J. B. Paramutation: a trans-homolog interaction affecting heritable gene regulation. Curr. Opin. Plant Biol. 15, 536-543 (2012
    • (2012) Curr. Opin. Plant Biol , vol.15 , pp. 536-543
    • Hollick, J.B.1
  • 117
    • 0033120047 scopus 로고    scopus 로고
    • An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis
    • Luff B., Pawlowski L., & Bender J. An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol. Cell 3, 505-511 (1999
    • (1999) Mol. Cell , vol.3 , pp. 505-511
    • Luff, B.1    Pawlowski, L.2    Bender, J.3
  • 118
    • 0032829710 scopus 로고    scopus 로고
    • Arabidopsis PAI gene arrangements, cytosine methylation, and expression
    • Melquist S., Luff B., & Bender J. Arabidopsis PAI gene arrangements, cytosine methylation, and expression. Genetics 153, 401-413 (1999
    • (1999) Genetics , vol.153 , pp. 401-413
    • Melquist, S.1    Luff, B.2    Bender, J.3
  • 119
    • 79955093180 scopus 로고    scopus 로고
    • Paramutation a process for acquiring trans-generational regulatory states
    • Erhard K. F., & Hollick J. B. Paramutation: a process for acquiring trans-generational regulatory states. Curr. Opin. Plant Biol. 14, 210-216 (2011
    • (2011) Curr. Opin. Plant Biol , vol.14 , pp. 210-216
    • Erhard, K.F.1    Hollick, J.B.2
  • 120
    • 84887311291 scopus 로고    scopus 로고
    • Specific tandem repeats are sufficient for paramutation-induced trans-generational silencing
    • Belele C. L., et al. Specific tandem repeats are sufficient for paramutation-induced trans-generational silencing. PLoS Genet. 9, e1003773 (2013
    • (2013) PLoS Genet , vol.9 , pp. e1003773
    • Belele, C.L.1
  • 121
    • 84866981889 scopus 로고    scopus 로고
    • Dual binding of chromomethylase domains to H3K9me2 containing nucleosomes directs DNA methylation in plants
    • Du J., et al. Dual binding of chromomethylase domains to H3K9me2 containing nucleosomes directs DNA methylation in plants. Cell 151, 167-180 (2012
    • (2012) Cell , vol.151 , pp. 167-180
    • Du, J.1
  • 122
    • 84879417659 scopus 로고    scopus 로고
    • Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
    • Law J. A., et al. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature 498, 385-389 (2013
    • (2013) Nature , vol.498 , pp. 385-389
    • Law, J.A.1
  • 123
    • 84895897598 scopus 로고    scopus 로고
    • SRA-, and SET-domain-containing proteins link RNA polymerase v occupancy to DNA methylation
    • Johnson L. M., et al. SRA-, and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature 507, 124-128 (2014
    • (2014) Nature , vol.507 , pp. 124-128
    • Johnson, L.M.1
  • 124
    • 84921364518 scopus 로고    scopus 로고
    • Epigenetic transitions leading to heritable RNA-mediated de novo silencing in Arabidopsis thaliana
    • Bond D. M., & Baulcombe D. C. Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 112, 917-922 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 917-922
    • Bond, D.M.1    Baulcombe, D.C.2
  • 125
    • 84896704687 scopus 로고    scopus 로고
    • Polyploids as a 'model system' for the study of heterosis
    • Washburn J. D., & Birchler J. A. Polyploids as a 'model system' for the study of heterosis. Plant Reprod. 27, 1-5 (2014
    • (2014) Plant Reprod , vol.27 , pp. 1-5
    • Washburn, J.D.1    Birchler, J.A.2
  • 126
    • 84879412664 scopus 로고    scopus 로고
    • Genomic and epigenetic insights into the molecular bases of heterosis
    • Chen Z. J. Genomic, and epigenetic insights into the molecular bases of heterosis. Nat. Rev. Genet. 14, 471-482 (2013
    • (2013) Nat. Rev. Genet , vol.14 , pp. 471-482
    • Chen, Z.J.1
  • 127
    • 84862777313 scopus 로고    scopus 로고
    • Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility
    • Ng D. W. K., Lu J., & Chen Z. J. Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. Curr. Opin. Plant Biol. 15, 154-161 (2012
    • (2012) Curr. Opin. Plant Biol , vol.15 , pp. 154-161
    • Ng, D.W.K.1    Lu, J.2    Chen, Z.J.3
  • 129
    • 70449588694 scopus 로고    scopus 로고
    • Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids, and allopolyploids
    • Ha M., et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids, and allopolyploids. Proc. Natl Acad. Sci. USA 106, 17835-17840 (2009
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 17835-17840
    • Ha, M.1
  • 130
    • 84857189983 scopus 로고    scopus 로고
    • Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics, and small silencing RNAs
    • Shivaprasad P. V., Dunn R. M., Santos B. A., Bassett A., & Baulcombe D. C. Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics, and small silencing RNAs. EMBO J. 31, 257-266 (2011
    • (2011) EMBO J. , vol.31 , pp. 257-266
    • Shivaprasad, P.V.1    Dunn, R.M.2    Santos, B.A.3    Bassett, A.4    Baulcombe, D.C.5
  • 131
    • 84862979828 scopus 로고    scopus 로고
    • Repeat associated small RNAs vary among parents, and following hybridization in maize
    • Barber W. T., et al. Repeat associated small RNAs vary among parents, and following hybridization in maize. Proc. Natl Acad. Sci. USA 109, 10444-10449 (2012
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 10444-10449
    • Barber, W.T.1
  • 132
    • 84860109530 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA methylation, and gene expression changes in two Arabidopsis ecotypes, and their reciprocal hybrids
    • Shen H., et al. Genome-wide analysis of DNA methylation, and gene expression changes in two Arabidopsis ecotypes, and their reciprocal hybrids. Plant Cell 24, 875-892 (2012
    • (2012) Plant Cell , vol.24 , pp. 875-892
    • Shen, H.1
  • 133
    • 33745668459 scopus 로고    scopus 로고
    • Parent-dependent loss of gene silencing during interspecies hybridization
    • Josefsson C., Dilkes B., & Comai L. Parent-dependent loss of gene silencing during interspecies hybridization. Curr. Biol. 16, 1322-1328 (2006
    • (2006) Curr. Biol , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3
  • 134
    • 84857374101 scopus 로고    scopus 로고
    • Rapid establishment of genetic incompatibility through natural epigenetic variation
    • Durand S., Bouché N., Perez Strand E., Loudet O., & Camilleri C. Rapid establishment of genetic incompatibility through natural epigenetic variation. Curr. Biol. 22, 326-331 (2012
    • (2012) Curr. Biol , vol.22 , pp. 326-331
    • Durand, S.1    Bouché, N.2    Perez Strand, E.3    Loudet, O.4    Camilleri, C.5
  • 135
    • 0035155845 scopus 로고    scopus 로고
    • Duplication and suppression of chloroplast protein translocation genes in maize
    • Settles A. M., Baron A., Barkan A., & Martienssen R. A. Duplication, and suppression of chloroplast protein translocation genes in maize. Genetics 157, 349-360 (2001
    • (2001) Genetics , vol.157 , pp. 349-360
    • Settles, A.M.1    Baron, A.2    Barkan, A.3    Martienssen, R.A.4
  • 136
    • 20044378849 scopus 로고    scopus 로고
    • Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
    • Slotkin R. K., Freeling M., & Lisch D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat. Genet. 37, 641-644 (2005
    • (2005) Nat. Genet , vol.37 , pp. 641-644
    • Slotkin, R.K.1    Freeling, M.2    Lisch, D.3
  • 137
    • 84862777814 scopus 로고    scopus 로고
    • A role for small RNAs in DNA double-strand break repair
    • Wei W., et al. A role for small RNAs in DNA double-strand break repair. Cell 149, 101-112 (2012
    • (2012) Cell , vol.149 , pp. 101-112
    • Wei, W.1
  • 138
    • 66149084316 scopus 로고    scopus 로고
    • QiRNA is a new type of small interfering RNA induced by DNA damage
    • Lee H. C., et al. qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 459, 274-277 (2009
    • (2009) Nature , vol.459 , pp. 274-277
    • Lee, H.C.1
  • 139
    • 41449089409 scopus 로고    scopus 로고
    • RNA interference guides histone modification during the S phase of chromosomal replication
    • Kloc A., Zaratiegui M., Nora E., & Martienssen R. RNA interference guides histone modification during the S phase of chromosomal replication. Curr. Biol. 18, 490-495 (2008
    • (2008) Curr. Biol , vol.18 , pp. 490-495
    • Kloc, A.1    Zaratiegui, M.2    Nora, E.3    Martienssen, R.4
  • 140
    • 80455176844 scopus 로고    scopus 로고
    • RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II
    • Zaratiegui M., et al. RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature 479, 135-138 (2011
    • (2011) Nature , vol.479 , pp. 135-138
    • Zaratiegui, M.1
  • 141
    • 84902287755 scopus 로고    scopus 로고
    • On the role of some argonaute proteins in meiosis, and DNA repair in arabidopsis thaliana
    • Oliver C., Santos J. L., & Pradillo M. On the role of some ARGONAUTE proteins in meiosis, and DNA repair in Arabidopsis thaliana. Front. Plant Sci. 5, 177 (2014
    • (2014) Front. Plant Sci , vol.5 , pp. 177
    • Oliver, C.1    Santos, J.L.2    Pradillo, M.3
  • 143
    • 84864647205 scopus 로고    scopus 로고
    • Site-specific dicer, and drosha RNA products control the DNA-damage response
    • Francia S., et al. Site-specific DICER, and DROSHA RNA products control the DNA-damage response. Nature 488, 231-235 (2012
    • (2012) Nature , vol.488 , pp. 231-235
    • Francia, S.1
  • 144
    • 79952314830 scopus 로고    scopus 로고
    • Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair
    • Chiolo I., et al. Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair. Cell 144, 732-744 (2011
    • (2011) Cell , vol.144 , pp. 732-744
    • Chiolo, I.1
  • 145
    • 84899898213 scopus 로고    scopus 로고
    • Ago2 facilitates Rad51 recruitment, and DNA double-strand break repair by homologous recombination
    • Gao M., et al. Ago2 facilitates Rad51 recruitment, and DNA double-strand break repair by homologous recombination. Cell Res. 24, 532-541 (2014
    • (2014) Cell Res , vol.24 , pp. 532-541
    • Gao, M.1
  • 146
    • 55249089227 scopus 로고    scopus 로고
    • Genome-wide identification, organization, and phylogenetic analysis of Dicer-like, Argonaute, and RNA-dependent RNA polymerase gene families, and their expression analysis during reproductive development, and stress in rice
    • Kapoor M., et al. Genome-wide identification, organization, and phylogenetic analysis of Dicer-like, Argonaute, and RNA-dependent RNA polymerase gene families, and their expression analysis during reproductive development, and stress in rice. BMC Genomics 9, 451 (2008
    • (2008) BMC Genomics , vol.9 , pp. 451
    • Kapoor, M.1
  • 147
    • 79952901988 scopus 로고    scopus 로고
    • Production of viable gametes without meiosis in maize deficient for an argonaute protein
    • Singh M., et al. Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein. Plant Cell 23, 443-458 (2011
    • (2011) Plant Cell , vol.23 , pp. 443-458
    • Singh, M.1
  • 149
    • 77950086568 scopus 로고    scopus 로고
    • Control of female gamete formation by a small RNA pathway in Arabidopsis
    • Olmedo-Monfil V., et al. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 464, 628-632 (2010
    • (2010) Nature , vol.464 , pp. 628-632
    • Olmedo-Monfil, V.1
  • 150
    • 84899637850 scopus 로고    scopus 로고
    • Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs
    • Komiya R., et al. Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs. Plant J. 78, 385-397 (2014
    • (2014) Plant J. , vol.78 , pp. 385-397
    • Komiya, R.1
  • 151
    • 84863338031 scopus 로고    scopus 로고
    • Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis
    • Tucker M. R., et al. Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis. Development 139, 1399-1404 (2012
    • (2012) Development , vol.139 , pp. 1399-1404
    • Tucker, M.R.1
  • 152
    • 35348889711 scopus 로고    scopus 로고
    • A germ cell specific gene of the argonaute family is essential for the progression of premeiotic mitosis, and meiosis during sporogenesis in rice
    • Nonomura K. I., et al. A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis, and meiosis during sporogenesis in rice. Plant Cell 19, 2583-2594 (2007
    • (2007) Plant Cell , vol.19 , pp. 2583-2594
    • Nonomura, K.I.1
  • 153
    • 84912061909 scopus 로고    scopus 로고
    • Mammalian piRNAs: Biogenesis, function, and mysteries
    • Fu Q., & Wang P. J. Mammalian piRNAs: biogenesis, function, and mysteries. Spermatogenesis 4, e27889 (2014
    • (2014) Spermatogenesis , vol.4 , pp. e27889
    • Fu, Q.1    Wang, P.J.2
  • 154
    • 84874525489 scopus 로고    scopus 로고
    • Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures
    • Poulsen C., Vaucheret H., & Brodersen P. Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell 25, 22-37 (2013
    • (2013) Plant Cell , vol.25 , pp. 22-37
    • Poulsen, C.1    Vaucheret, H.2    Brodersen, P.3
  • 155
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide
    • Mi S., et al. Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5′ terminal nucleotide. Cell 133, 116-127 (2008
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.1
  • 156
    • 44349094874 scopus 로고    scopus 로고
    • The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins
    • Takeda A., Iwasaki S., Watanabe T., Utsumi M., & Watanabe Y. The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins. Plant Cell Physiol. 49, 493-500 (2008
    • (2008) Plant Cell Physiol , vol.49 , pp. 493-500
    • Takeda, A.1    Iwasaki, S.2    Watanabe, T.3    Utsumi, M.4    Watanabe, Y.5
  • 157
    • 84866140582 scopus 로고    scopus 로고
    • Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs
    • Frank F., Hauver J., Sonenberg N., & Nagar B. Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs. EMBO J. 31, 3588-3595 (2012
    • (2012) EMBO J. , vol.31 , pp. 3588-3595
    • Frank, F.1    Hauver, J.2    Sonenberg, N.3    Nagar, B.4
  • 158
    • 79953857473 scopus 로고    scopus 로고
    • Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
    • Zhu H., et al. Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 145, 242-256 (2011
    • (2011) Cell , vol.145 , pp. 242-256
    • Zhu, H.1
  • 159
    • 63349100127 scopus 로고    scopus 로고
    • The argonaute10 gene modulates shoot apical meristem maintenance, and establishment of leaf polarity by repressing mir165/166 in arabidopsis
    • Liu Q., et al. The ARGONAUTE10 gene modulates shoot apical meristem maintenance, and establishment of leaf polarity by repressing miR165/166 in Arabidopsis. Plant J. 58, 27-40 (2009
    • (2009) Plant J. , vol.58 , pp. 27-40
    • Liu, Q.1
  • 160
    • 79953744170 scopus 로고    scopus 로고
    • Argonaute10, and argonaute1 regulate the termination of floral stem cells through two micrornas in arabidopsis
    • Ji L., et al. ARGONAUTE10, and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet. 7, e1001358 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1001358
    • Ji, L.1
  • 161
    • 41149158475 scopus 로고    scopus 로고
    • Specificity of argonaute7-miR390 interaction, and dual functionality in TAS3 trans-acting siRNA formation
    • Montgomery T. A., et al. Specificity of ARGONAUTE7-miR390 interaction, and dual functionality in TAS3 trans-acting siRNA formation. Cell 133, 128-141 (2008
    • (2008) Cell , vol.133 , pp. 128-141
    • Montgomery, T.A.1
  • 162
    • 84879688354 scopus 로고    scopus 로고
    • Arabidopsis argonaute7 selects mir390 through multiple checkpoints during risc assembly
    • Endo Y., Iwakawa H. O., & Tomari Y. Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly. EMBO Rep. 14, 652-658 (2013
    • (2013) EMBO Rep , vol.14 , pp. 652-658
    • Endo, Y.1    Iwakawa, H.O.2    Tomari, Y.3
  • 163
    • 79955499404 scopus 로고    scopus 로고
    • Arabidopsis Argonaute 2 regulates innate immunity via miRNA393∗-mediated silencing of a Golgi-localized SNARE gene MEMB12
    • Zhang X., et al. Arabidopsis Argonaute 2 regulates innate immunity via miRNA393∗-mediated silencing of a Golgi-localized SNARE gene, MEMB12. Mol. Cell 42, 356-366 (2011
    • (2011) Mol. Cell , vol.42 , pp. 356-366
    • Zhang, X.1
  • 164
    • 84922319019 scopus 로고    scopus 로고
    • ARGONAUTE PIWI domain, and microRNA duplex structure regulate small RNA sorting in Arabidopsis
    • Zhang X., et al. ARGONAUTE PIWI domain, and microRNA duplex structure regulate small RNA sorting in Arabidopsis. Nat. Commun. 5, 5468 (2014
    • (2014) Nat. Commun , vol.5 , pp. 5468
    • Zhang, X.1
  • 165
    • 61849115258 scopus 로고    scopus 로고
    • Pattern formation via small RNA mobility
    • Chitwood D. H., et al. Pattern formation via small RNA mobility. Genes Dev. 23, 549-554 (2009
    • (2009) Genes Dev , vol.23 , pp. 549-554
    • Chitwood, D.H.1
  • 166
    • 77952403409 scopus 로고    scopus 로고
    • Small silencing RNAs in plants are mobile, and direct epigenetic modification in recipient cells
    • Molnar A., et al. Small silencing RNAs in plants are mobile, and direct epigenetic modification in recipient cells. Science 328, 872-875 (2010
    • (2010) Science , vol.328 , pp. 872-875
    • Molnar, A.1
  • 168
    • 77952679512 scopus 로고    scopus 로고
    • Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
    • Carlsbecker A., et al. Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 465, 316-321 (2010
    • (2010) Nature , vol.465 , pp. 316-321
    • Carlsbecker, A.1
  • 169
    • 84904868326 scopus 로고    scopus 로고
    • Small RNAs break out: The molecular cell biology of mobile small RNAs
    • Sarkies P., & Miska E. A. Small RNAs break out: the molecular cell biology of mobile small RNAs. Nat. Rev. Mol. Cell Biol. 15, 525-535 (2014
    • (2014) Nat. Rev. Mol. Cell Biol , vol.15 , pp. 525-535
    • Sarkies, P.1    Miska, E.A.2
  • 170
    • 67650461957 scopus 로고    scopus 로고
    • Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
    • Mosher R. A., et al. Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature 460, 283-286 (2009
    • (2009) Nature , vol.460 , pp. 283-286
    • Mosher, R.A.1
  • 171
    • 84867053720 scopus 로고    scopus 로고
    • Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
    • Calarco J. P., et al. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 151, 194-205 (2012
    • (2012) Cell , vol.151 , pp. 194-205
    • Calarco, J.P.1
  • 172
    • 84866140080 scopus 로고    scopus 로고
    • Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
    • Ibarra C. A., et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 337, 1360-1364 (2012
    • (2012) Science , vol.337 , pp. 1360-1364
    • Ibarra, C.A.1
  • 173
    • 84879629508 scopus 로고    scopus 로고
    • RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis
    • Vu T. M., et al. RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development 140, 2953-2960 (2013
    • (2013) Development , vol.140 , pp. 2953-2960
    • Vu, T.M.1
  • 174
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
    • Borsani O., Zhu J., Verslues P. E., Sunkar R., & Zhu J. K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123, 1279-1291 (2005
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 175
    • 36849089086 scopus 로고    scopus 로고
    • A novel class of bacteria-induced small RNAs in Arabidopsis
    • Katiyar-Agarwal S., Gao S., Vivian-Smith A., & Jin H. A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev. 21, 3123-3134 (2007
    • (2007) Genes Dev , vol.21 , pp. 3123-3134
    • Katiyar-Agarwal, S.1    Gao, S.2    Vivian-Smith, A.3    Jin, H.4
  • 176
    • 77952415941 scopus 로고    scopus 로고
    • Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis
    • Ron M., Alandete Saez M., Eshed Williams L., Fletcher J. C., & McCormick S. Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis. Genes Dev. 24, 1010-1021 (2010
    • (2010) Genes Dev , vol.24 , pp. 1010-1021
    • Ron, M.1    Alandete Saez, M.2    Eshed Williams, L.3    Fletcher, J.C.4    McCormick, S.5
  • 177
    • 61849147413 scopus 로고    scopus 로고
    • Triggering the formation of tasiRNAs in Arabidopsis thaliana: The role of microRNA miR173
    • Felippes F. F., & Weigel D. Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Rep. 10, 264-270 (2009
    • (2009) EMBO Rep , vol.10 , pp. 264-270
    • Felippes, F.F.1    Weigel, D.2
  • 178
    • 84859199684 scopus 로고    scopus 로고
    • Gene expression, and stress response mediated by the epigenetic regulation of a transposable element small RNA
    • McCue A. D., Nuthikattu S., Reeder S. H., & Slotkin R. K. Gene expression, and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet. 8, e1002474 (2012
    • (2012) PLoS Genet , vol.8 , pp. e1002474
    • McCue, A.D.1    Nuthikattu, S.2    Reeder, S.H.3    Slotkin, R.K.4


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