메뉴 건너뛰기




Volumn 140, Issue 14, 2013, Pages 2953-2960

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis

Author keywords

Arabidopsis; DNA methylation; Endosperm; Imprinting; RdDM; Seed

Indexed keywords

DNA METHYLTRANSFERASE 1; RNA DIRECTED DNA POLYMERASE; RNA POLYMERASE; SMALL INTERFERING RNA;

EID: 84879629508     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.092981     Document Type: Article
Times cited : (79)

References (57)
  • 1
    • 70349104647 scopus 로고    scopus 로고
    • Genomic imprinting: Employing and avoiding epigenetic processes
    • Bartolomei, M. S. (2009). Genomic imprinting: employing and avoiding epigenetic processes. Genes Dev. 23, 2124-2133.
    • (2009) Genes Dev. , vol.23 , pp. 2124-2133
    • Bartolomei, M.S.1
  • 3
    • 84881495324 scopus 로고    scopus 로고
    • Hypothesis: Selection of imprinted genes is driven by silencing deleterious gene activity in somatic tissues
    • doi 10.1101/ sqb.2012.77.014514
    • Berger, F., Vu, M.T., Li, J. and Chen, B. (2013). Hypothesis: Selection of imprinted genes is driven by silencing deleterious gene activity in somatic tissues. Cold Spring Harb. Symp. Quant. Biol. 77, doi 10.1101/ sqb.2012.77.014514.
    • (2013) Cold Spring Harb. Symp. Quant. Biol. , vol.77
    • Berger, F.1    Vu, M.T.2    Li, J.3    Chen, B.4
  • 4
    • 79955619429 scopus 로고    scopus 로고
    • Germline specification and function in plants
    • Berger, F. and Twell, D. (2011). Germline specification and function in plants. Annu. Rev. Plant Biol. 62, 461-484.
    • (2011) Annu. Rev. Plant Biol. , vol.62 , pp. 461-484
    • Berger, F.1    Twell, D.2
  • 7
    • 0037046810 scopus 로고    scopus 로고
    • Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • Cao, X. and Jacobsen, S. E. (2002). Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol. 12, 1138-1144.
    • (2002) Curr. Biol. , vol.12 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 9
    • 58149347080 scopus 로고    scopus 로고
    • A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
    • Daxinger, L., Kanno, T., Bucher, E., van der Winden, J., Naumann, U., Matzke, A. J. and Matzke, M. (2009). A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J. 28, 48-57.
    • (2009) EMBO J. , vol.28 , pp. 48-57
    • Daxinger, L.1    Kanno, T.2    Bucher, E.3    van der Winden, J.4    Naumann, U.5    Matzke, A.J.6    Matzke, M.7
  • 10
    • 70349329406 scopus 로고    scopus 로고
    • Epigenetic asymmetry in the zygote and mammalian development
    • Feil, R. (2009). Epigenetic asymmetry in the zygote and mammalian development. Int. J. Dev. Biol. 53, 191-201.
    • (2009) Int. J. Dev. Biol. , vol.53 , pp. 191-201
    • Feil, R.1
  • 11
    • 34047093266 scopus 로고    scopus 로고
    • Convergent evolution of genomic imprinting in plants and mammals
    • Feil, R. and Berger, F. (2007). Convergent evolution of genomic imprinting in plants and mammals. Trends Genet. 23, 192-199.
    • (2007) Trends Genet. , vol.23 , pp. 192-199
    • Feil, R.1    Berger, F.2
  • 12
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • Feng, S., Jacobsen, S. E. and Reik, W. (2010). Epigenetic reprogramming in plant and animal development. Science 330, 622-627.
    • (2010) Science , vol.330 , pp. 622-627
    • Feng, S.1    Jacobsen, S.E.2    Reik, W.3
  • 13
    • 79960530899 scopus 로고    scopus 로고
    • Genomic imprinting: The emergence of an epigenetic paradigm
    • Ferguson-Smith, A. C. (2011). Genomic imprinting: the emergence of an epigenetic paradigm. Nat. Rev. Genet. 12, 565-575.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 565-575
    • Ferguson-Smith, A.C.1
  • 14
    • 0029738387 scopus 로고    scopus 로고
    • Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
    • Finnegan, E. J., Peacock, W. J. and Dennis, E. S. (1996). Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl. Acad. Sci. USA 93, 8449-8454.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8449-8454
    • Finnegan, E.J.1    Peacock, W.J.2    Dennis, E.S.3
  • 16
    • 57749088579 scopus 로고    scopus 로고
    • F-actin organization and pollen tube tip growth in Arabidopsis are dependent on the gametophytespecific Armadillo repeat protein ARO1
    • Gebert, M., Dresselhaus, T. and Sprunck, S. (2008). F-actin organization and pollen tube tip growth in Arabidopsis are dependent on the gametophytespecific Armadillo repeat protein ARO1. Plant Cell 20, 2798-2814.
    • (2008) Plant Cell , vol.20 , pp. 2798-2814
    • Gebert, M.1    Dresselhaus, T.2    Sprunck, S.3
  • 17
    • 59249109669 scopus 로고    scopus 로고
    • DNA demethylation by DNA repair
    • Gehring, M., Reik, W. and Henikoff, S. (2009). DNA demethylation by DNA repair. Trends Genet. 25, 82-90.
    • (2009) Trends Genet. , vol.25 , pp. 82-90
    • Gehring, M.1    Reik, W.2    Henikoff, S.3
  • 18
    • 80051745935 scopus 로고    scopus 로고
    • Genomic analysis of parentof-origin allelic expression in Arabidopsis thaliana seeds
    • Gehring, M., Missirian, V. and Henikoff, S. (2011). Genomic analysis of parentof-origin allelic expression in Arabidopsis thaliana seeds. PLoS ONE 6, e23687.
    • (2011) PLoS ONE , vol.6
    • Gehring, M.1    Missirian, V.2    Henikoff, S.3
  • 19
    • 3242887908 scopus 로고    scopus 로고
    • Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana
    • Guitton, A. E., Page, D. R., Chambrier, P., Lionnet, C., Faure, J. E., Grossniklaus, U. and Berger, F. (2004). Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana. Development 131, 2971-2981.
    • (2004) Development , vol.131 , pp. 2971-2981
    • Guitton, A.E.1    Page, D.R.2    Chambrier, P.3    Lionnet, C.4    Faure, J.E.5    Grossniklaus, U.6    Berger, F.7
  • 21
    • 45349108094 scopus 로고    scopus 로고
    • Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading
    • Henderson, I. R. and Jacobsen, S. E. (2008). Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 22, 1597-1606.
    • (2008) Genes Dev. , vol.22 , pp. 1597-1606
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 22
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr, A. J., Jensen, M. B., Dalmay, T. and Baulcombe, D. C. (2005). RNA polymerase IV directs silencing of endogenous DNA. Science 308, 118-120.
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 25
    • 58149169134 scopus 로고    scopus 로고
    • The two male gametes share equal ability to fertilize the egg cell in Arabidopsis thaliana
    • Ingouff, M., Sakata, T., Li, J., Sprunck, S., Dresselhaus, T. and Berger, F. (2009). The two male gametes share equal ability to fertilize the egg cell in Arabidopsis thaliana. Curr. Biol. 19, R19-R20.
    • (2009) Curr. Biol. , vol.19
    • Ingouff, M.1    Sakata, T.2    Li, J.3    Sprunck, S.4    Dresselhaus, T.5    Berger, F.6
  • 26
    • 70349786302 scopus 로고    scopus 로고
    • Epigenetic resetting of a gene imprinted in plant embryos
    • Jahnke, S. and Scholten, S. (2009). Epigenetic resetting of a gene imprinted in plant embryos. Curr. Biol. 19, 1677-1681.
    • (2009) Curr. Biol. , vol.19 , pp. 1677-1681
    • Jahnke, S.1    Scholten, S.2
  • 27
    • 70349623177 scopus 로고    scopus 로고
    • Gamete-specific epigenetic mechanisms shape genomic imprinting
    • Jullien, P. E. and Berger, F. (2009). Gamete-specific epigenetic mechanisms shape genomic imprinting. Curr. Opin. Plant Biol. 12, 637-642.
    • (2009) Curr. Opin. Plant Biol. , vol.12 , pp. 637-642
    • Jullien, P.E.1    Berger, F.2
  • 28
    • 50249117653 scopus 로고    scopus 로고
    • Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis
    • Jullien, P. E., Mosquna, A., Ingouff, M., Sakata, T., Ohad, N. and Berger, F. (2008). Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol. 6, e194.
    • (2008) PLoS Biol. , vol.6
    • Jullien, P.E.1    Mosquna, A.2    Ingouff, M.3    Sakata, T.4    Ohad, N.5    Berger, F.6
  • 29
    • 84867405328 scopus 로고    scopus 로고
    • DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana
    • Jullien, P. E., Susaki, D., Yelagandula, R., Higashiyama, T. and Berger, F. (2012). DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana. Curr. Biol. 22, 1825-1830.
    • (2012) Curr. Biol. , vol.22 , pp. 1825-1830
    • Jullien, P.E.1    Susaki, D.2    Yelagandula, R.3    Higashiyama, T.4    Berger, F.5
  • 30
    • 77954933966 scopus 로고    scopus 로고
    • Retrotransposon silencing by DNA methylation contributed to the evolution of placentation and genomic imprinting in mammals
    • Kaneko-Ishino, T. and Ishino, F. (2010). Retrotransposon silencing by DNA methylation contributed to the evolution of placentation and genomic imprinting in mammals. Dev. Growth Differ. 52, 533-543.
    • (2010) Dev. Growth Differ. , vol.52 , pp. 533-543
    • Kaneko-Ishino, T.1    Ishino, F.2
  • 31
    • 1542288827 scopus 로고    scopus 로고
    • FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development
    • Katz, A., Oliva, M., Mosquna, A., Hakim, O. and Ohad, N. (2004). FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J. 37, 707-719.
    • (2004) Plant J. , vol.37 , pp. 707-719
    • Katz, A.1    Oliva, M.2    Mosquna, A.3    Hakim, O.4    Ohad, N.5
  • 33
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J. A. and Jacobsen, S. E. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11, 204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 36
    • 79959818388 scopus 로고    scopus 로고
    • A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm
    • Luo, M., Taylor, J. M., Spriggs, A., Zhang, H., Wu, X., Russell, S., Singh, M. and Koltunow, A. (2011). A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm. PLoS Genet. 7, e1002125.
    • (2011) PLoS Genet. , vol.7
    • Luo, M.1    Taylor, J.M.2    Spriggs, A.3    Zhang, H.4    Wu, X.5    Russell, S.6    Singh, M.7    Koltunow, A.8
  • 40
    • 42549096814 scopus 로고    scopus 로고
    • PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
    • Mosher, R. A., Schwach, F., Studholme, D. and Baulcombe, D. C. (2008). PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc. Natl. Acad. Sci. USA 105, 3145-3150.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 3145-3150
    • Mosher, R.A.1    Schwach, F.2    Studholme, D.3    Baulcombe, D.C.4
  • 41
    • 67650461957 scopus 로고    scopus 로고
    • Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
    • Mosher, R. A., Melnyk, C. W., Kelly, K. A., Dunn, R. M., Studholme, D. J. and Baulcombe, D. C. (2009). Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature 460, 283-286.
    • (2009) Nature , vol.460 , pp. 283-286
    • Mosher, R.A.1    Melnyk, C.W.2    Kelly, K.A.3    Dunn, R.M.4    Studholme, D.J.5    Baulcombe, D.C.6
  • 42
    • 80053915058 scopus 로고    scopus 로고
    • An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs
    • Mosher, R. A., Tan, E. H., Shin, J., Fischer, R. L., Pikaard, C. S. and Baulcombe, D. C. (2011). An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs. PLoS ONE 6, e25756.
    • (2011) PLoS ONE , vol.6
    • Mosher, R.A.1    Tan, E.H.2    Shin, J.3    Fischer, R.L.4    Pikaard, C.S.5    Baulcombe, D.C.6
  • 44
    • 14844323069 scopus 로고    scopus 로고
    • An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors
    • Okamura, K., Yamada, Y., Sakaki, Y. and Ito, T. (2004). An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors. DNA Res. 11, 381-390.
    • (2004) DNA Res. , vol.11 , pp. 381-390
    • Okamura, K.1    Yamada, Y.2    Sakaki, Y.3    Ito, T.4
  • 45
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera, Y., Haag, J. R., Ream, T., Costa Nunes, P., Pontes, O. and Pikaard, C. S. (2005). Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120, 613-622.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa Nunes, P.4    Pontes, O.5    Pikaard, C.S.6
  • 46
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • Pontier, D., Yahubyan, G., Vega, D., Bulski, A., Saez-Vasquez, J., Hakimi, M. A., Lerbs-Mache, S., Colot, V. and Lagrange, T. (2005). Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev. 19, 2030-2040.
    • (2005) Genes Dev. , vol.19 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.A.6    Lerbs-Mache, S.7    Colot, V.8    Lagrange, T.9
  • 47
    • 34547747862 scopus 로고    scopus 로고
    • Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatinremodeling factor DDM1
    • Saze, H. and Kakutani, T. (2007). Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatinremodeling factor DDM1. EMBO J. 26, 3641-3652.
    • (2007) EMBO J. , vol.26 , pp. 3641-3652
    • Saze, H.1    Kakutani, T.2
  • 48
    • 0038670503 scopus 로고    scopus 로고
    • Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
    • Saze, H., Mittelsten Scheid, O. and Paszkowski, J. (2003). Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat. Genet. 34, 65-69.
    • (2003) Nat. Genet. , vol.34 , pp. 65-69
    • Saze, H.1    Mittelsten Scheid, O.2    Paszkowski, J.3
  • 49
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C(T) method
    • Schmittgen, T. D. and Livak, K. J. (2008). Analyzing real-time PCR data by the comparative C(T) method. Nat. Protoc. 3, 1101-1108.
    • (2008) Nat. Protoc. , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 51
    • 57749121487 scopus 로고    scopus 로고
    • MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins
    • Tiwari, S., Schulz, R., Ikeda, Y., Dytham, L., Bravo, J., Mathers, L., Spielman, M., Guzmán, P., Oakey, R. J., Kinoshita, T. et al. (2008). MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins. Plant Cell 20, 2387-2398.
    • (2008) Plant Cell , vol.20 , pp. 2387-2398
    • Tiwari, S.1    Schulz, R.2    Ikeda, Y.3    Dytham, L.4    Bravo, J.5    Mathers, L.6    Spielman, M.7    Guzmán, P.8    Oakey, R.J.9    Kinoshita, T.10
  • 52
    • 0141960164 scopus 로고    scopus 로고
    • The potential role of gene duplications in the evolution of imprinting mechanisms
    • Walter, J. and Paulsen, M. (2003). The potential role of gene duplications in the evolution of imprinting mechanisms. Hum. Mol. Genet. 12 Suppl. 2, R215-R220.
    • (2003) Hum. Mol. Genet. , vol.12 , Issue.SUPPL. 2
    • Walter, J.1    Paulsen, M.2
  • 55
    • 0038407464 scopus 로고    scopus 로고
    • What good is genomic imprinting: The function of parent-specific gene expression
    • Wilkins, J. F. and Haig, D. (2003). What good is genomic imprinting: the function of parent-specific gene expression. Nat. Rev. Genet. 4, 359-368.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 359-368
    • Wilkins, J.F.1    Haig, D.2
  • 57
    • 84055178968 scopus 로고    scopus 로고
    • Extensive, clustered parental imprinting of proteincoding and noncoding RNAs in developing maize endosperm
    • Zhang, M., Zhao, H., Xie, S., Chen, J., Xu, Y., Wang, K., Zhao, H., Guan, H., Hu, X., Jiao, Y. et al. (2011). Extensive, clustered parental imprinting of proteincoding and noncoding RNAs in developing maize endosperm. Proc. Natl. Acad. Sci. USA 108, 20042-20047.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 20042-20047
    • Zhang, M.1    Zhao, H.2    Xie, S.3    Chen, J.4    Xu, Y.5    Wang, K.6    Zhao, H.7    Guan, H.8    Hu, X.9    Jiao, Y.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.