-
1
-
-
0035800467
-
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
-
Alabadí, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Más, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
-
(2001)
Science
, vol.293
, pp. 880-883
-
-
Alabadí, D.1
Oyama, T.2
Yanovsky, M.J.3
Harmon, F.G.4
Más, P.5
Kay, S.A.6
-
2
-
-
75849126549
-
Intraspecific hybrids of Arabidopsis thaliana revealed no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levels
-
Banaei Moghaddam, A.M., Fuchs, J., Czauderna, T., Houben, A., and Mette, M.F. (2010). Intraspecific hybrids of Arabidopsis thaliana revealed no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levels. Theor. Appl. Genet. 120: 215-226.
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 215-226
-
-
Banaei Moghaddam, A.M.1
Fuchs, J.2
Czauderna, T.3
Houben, A.4
Mette, M.F.5
-
3
-
-
35148870536
-
Widespread role for the flowering-time regulators FCA and FPA in RNAmediated chromatin silencing
-
Bäurle, I., Smith, L., Baulcombe, D.C., and Dean, C. (2007). Widespread role for the flowering-time regulators FCA and FPA in RNAmediated chromatin silencing. Science 318: 109-112.
-
(2007)
Science
, vol.318
, pp. 109-112
-
-
Bäurle, I.1
Smith, L.2
Baulcombe, D.C.3
Dean, C.4
-
4
-
-
0142060823
-
In search of the molecular basis of heterosis
-
Birchler, J.A., Auger, D.L., and Riddle, N.C. (2003). In search of the molecular basis of heterosis. Plant Cell 15: 2236-2239.
-
(2003)
Plant Cell
, vol.15
, pp. 2236-2239
-
-
Birchler, J.A.1
Auger, D.L.2
Riddle, N.C.3
-
5
-
-
77956795823
-
Heterosis
-
Birchler, J.A., Yao, H., Chudalayandi, S., Vaiman, D., and Veitia, R.A. (2010). Heterosis. Plant Cell 22: 2105-2112.
-
(2010)
Plant Cell
, vol.22
, pp. 2105-2112
-
-
Birchler, J.A.1
Yao, H.2
Chudalayandi, S.3
Vaiman, D.4
Veitia, R.A.5
-
6
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A. (2002). DNA methylation patterns and epigenetic memory. Genes Dev. 16: 6-21.
-
(2002)
Genes Dev
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
7
-
-
0034989753
-
Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis
-
Brown, D.E., Rashotte, A.M., Murphy, A.S., Normanly, J., Tague, B.W., Peer, W.A., Taiz, L., and Muday, G.K. (2001). Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis. Plant Physiol. 126: 524-535.
-
(2001)
Plant Physiol
, vol.126
, pp. 524-535
-
-
Brown, D.E.1
Rashotte, A.M.2
Murphy, A.S.3
Normanly, J.4
Tague, B.W.5
Peer, W.A.6
Taiz, L.7
Muday, G.K.8
-
8
-
-
0037058968
-
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
-
Cao, X., and Jacobsen, S.E. (2002). Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc. Natl. Acad. Sci. USA 99 (suppl. 4): 16491-16498.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.SUPPL. 4
, pp. 16491-16498
-
-
Cao, X.1
Jacobsen, S.E.2
-
9
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan, S.W., Henderson, I.R., and Jacobsen, S.E. (2005). Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6: 351-360.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
10
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen, X. (2009). Small RNAs and their roles in plant development. Annu. Rev. Cell Dev. Biol. 25: 21-44.
-
(2009)
Annu. Rev. Cell Dev. Biol.
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
11
-
-
77950444157
-
Small RNAs - Secrets and surprises of the genome
-
Chen, X. (2010). Small RNAs - Secrets and surprises of the genome. Plant J. 61: 941-958.
-
(2010)
Plant J
, vol.61
, pp. 941-958
-
-
Chen, X.1
-
12
-
-
0036339614
-
HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower
-
Chen, X., Liu, J., Cheng, Y., and Jia, D. (2002). HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower. Development 129: 1085-1094.
-
(2002)
Development
, vol.129
, pp. 1085-1094
-
-
Chen, X.1
Liu, J.2
Cheng, Y.3
Jia, D.4
-
13
-
-
75949117260
-
Molecular mechanisms of polyploidy and hybrid vigor
-
Chen, Z.J. (2010). Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci. 15: 57-71.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 57-71
-
-
Chen, Z.J.1
-
14
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus, S.J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C.D., Pradhan, S., Nelson, S.F., Pellegrini, M., and Jacobsen, S.E. (2008). Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
15
-
-
0000422766
-
Alternative hypotheses of hybrid vigor
-
Crow, J.F. (1948). Alternative hypotheses of hybrid vigor. Genetics 33: 477-487.
-
(1948)
Genetics
, vol.33
, pp. 477-487
-
-
Crow, J.F.1
-
16
-
-
0033539183
-
An epigenetic mutation responsible for natural variation in floral symmetry
-
Cubas, P., Vincent, C., and Coen, E. (1999). An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401: 157-161.
-
(1999)
Nature
, vol.401
, pp. 157-161
-
-
Cubas, P.1
Vincent, C.2
Coen, E.3
-
17
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng, S., et al. (2010). Conservation and divergence of methylation patterning in plants and animals. Proc. Natl. Acad. Sci. USA 107: 8689-8694.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
-
18
-
-
0029738387
-
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
-
Finnegan, E.J., Peacock, W.J., and Dennis, E.S. (1996). Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl. Acad. Sci. USA 93: 8449-8454.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8449-8454
-
-
Finnegan, E.J.1
Peacock, W.J.2
Dennis, E.S.3
-
19
-
-
34548587365
-
Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred lines
-
Frascaroli, E., Canè, M.A., Landi, P., Pea, G., Gianfranceschi, L., Villa, M., Morgante, M., and Pè, M.E. (2007). Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred lines. Genetics 176: 625-644.
-
(2007)
Genetics
, vol.176
, pp. 625-644
-
-
Frascaroli, E.1
Canè, M.A.2
Landi, P.3
Pea, G.4
Gianfranceschi, L.5
Villa, M.6
Morgante, M.7
Pè, M.E.8
-
20
-
-
0035949683
-
Drought- and salt-tolerant plants result from overexpression of the AVP1 H+-pump
-
Gaxiola, R.A., Li, J., Undurraga, S., Dang, L.M., Allen, G.J., Alper, S.L., and Fink, G.R. (2001). Drought- and salt-tolerant plants result from overexpression of the AVP1 H+-pump. Proc. Natl. Acad. Sci. USA 98: 11444-11449.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11444-11449
-
-
Gaxiola, R.A.1
Li, J.2
Undurraga, S.3
Dang, L.M.4
Allen, G.J.5
Alper, S.L.6
Fink, G.R.7
-
21
-
-
79952301195
-
Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
-
Groszmann, M., Greaves, I.K., Albertyn, Z.I., Scofield, G.N., Peacock, W.J., and Dennis, E.S. (2011). Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc. Natl. Acad. Sci. USA 108: 2617-2622.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 2617-2622
-
-
Groszmann, M.1
Greaves, I.K.2
Albertyn, Z.I.3
Scofield, G.N.4
Peacock, W.J.5
Dennis, E.S.6
-
22
-
-
79955592294
-
The epigenome and plant development
-
He, G., Elling, A.A., and Deng, X.W. (2011). The epigenome and plant development. Annu. Rev. Plant Biol. 62: 411-435.
-
(2011)
Annu. Rev. Plant Biol.
, vol.62
, pp. 411-435
-
-
He, G.1
Elling, A.A.2
Deng, X.W.3
-
23
-
-
77950346035
-
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
-
He, G., et al. (2010). Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 22: 17-33.
-
(2010)
Plant Cell
, vol.22
, pp. 17-33
-
-
He, G.1
-
24
-
-
34249330696
-
Epigenetic inheritance in plants
-
Henderson, I.R., and Jacobsen, S.E. (2007). Epigenetic inheritance in plants. Nature 447: 418-424.
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
25
-
-
34548395815
-
Towards the molecular basis of heterosis
-
Hochholdinger, F., and Hoecker, N. (2007). Towards the molecular basis of heterosis. Trends Plant Sci. 12: 427-432.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 427-432
-
-
Hochholdinger, F.1
Hoecker, N.2
-
26
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh, T.F., Ibarra, C.A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R.L., and Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. Science 324: 1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
27
-
-
0141787955
-
The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size
-
Hu, Y., Xie, Q., and Chua, N.H. (2003). The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell 15: 1951-1961.
-
(2003)
Plant Cell
, vol.15
, pp. 1951-1961
-
-
Hu, Y.1
Xie, Q.2
Chua, N.H.3
-
28
-
-
0028155769
-
The flavonoid biosynthetic pathway in plants: Function and evolution
-
Koes, R.E., Quattrocchio, R., and Mol, J.N.M. (1994). The flavonoid biosynthetic pathway in plants: Function and evolution. Bioessays 16: 123-132.
-
(1994)
Bioessays
, vol.16
, pp. 123-132
-
-
Koes, R.E.1
Quattrocchio, R.2
Mol, J.N.M.3
-
29
-
-
43449129747
-
Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance
-
Korn, M., Peterek, S., Mock, H.P., Heyer, A.G., and Hincha, D.K. (2008). Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance. Plant Cell Environ. 31: 813-827.
-
(2008)
Plant Cell Environ
, vol.31
, pp. 813-827
-
-
Korn, M.1
Peterek, S.2
Mock, H.P.3
Heyer, A.G.4
Hincha, D.K.5
-
30
-
-
77951769145
-
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato
-
Krieger, U., Lippman, Z.B., and Zamir, D. (2010). The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat. Genet. 42: 459-463.
-
(2010)
Nat. Genet.
, vol.42
, pp. 459-463
-
-
Krieger, U.1
Lippman, Z.B.2
Zamir, D.3
-
31
-
-
53149149377
-
Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis
-
Kurihara, Y., Matsui, A., Kawashima, M., Kaminuma, E., Ishida, J., Morosawa, T., Mochizuki, Y., Kobayashi, N., Toyoda, T., Shinozaki, K., and Seki, M. (2008). Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis. Biochem. Biophys. Res. Commun. 376: 553-557.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.376
, pp. 553-557
-
-
Kurihara, Y.1
Matsui, A.2
Kawashima, M.3
Kaminuma, E.4
Ishida, J.5
Morosawa, T.6
Mochizuki, Y.7
Kobayashi, N.8
Toyoda, T.9
Shinozaki, K.10
Seki, M.11
-
32
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai, J., et al. (2010). Genome-wide patterns of genetic variation among elite maize inbred lines. Nat. Genet. 42: 1027-1030.
-
(2010)
Nat. Genet.
, vol.42
, pp. 1027-1030
-
-
Lai, J.1
-
33
-
-
62849098006
-
Molecular biology. Dynamic DNA methylation
-
Law, J.A., and Jacobsen, S.E. (2009). Molecular biology. Dynamic DNA methylation. Science 323: 1568-1569.
-
(2009)
Science
, vol.323
, pp. 1568-1569
-
-
Law, J.A.1
Jacobsen, S.E.2
-
34
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J.A., and Jacobsen, S.E. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
35
-
-
33646895141
-
Genetics and biochemistry of seed flavonoids
-
Lepiniec, L., Debeaujon, I., Routaboul, J.M., Baudry, A., Pourcel, L., Nesi, N., and Caboche, M. (2006). Genetics and biochemistry of seed flavonoids. Annu. Rev. Plant Biol. 57: 405-430.
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 405-430
-
-
Lepiniec, L.1
Debeaujon, I.2
Routaboul, J.M.3
Baudry, A.4
Pourcel, L.5
Nesi, N.6
Caboche, M.7
-
36
-
-
64749102820
-
Measurement of auxin transport in Arabidopsis thaliana
-
Lewis, D.R., and Muday, G.K. (2009). Measurement of auxin transport in Arabidopsis thaliana. Nat. Protoc. 4: 437-451.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 437-451
-
-
Lewis, D.R.1
Muday, G.K.2
-
37
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J., and Durbin, R. (2008). Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851-1858.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
38
-
-
78650883757
-
Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling
-
Li, J., Li, G., Gao, S., Martinez, C., He, G., Zhou, Z., Huang, X., Lee, J.H., Zhang, H., Shen, Y., Wang, H., and Deng, X.W. (2010). Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling. Plant Cell 22: 3634-3649.
-
(2010)
Plant Cell
, vol.22
, pp. 3634-3649
-
-
Li, J.1
Li, G.2
Gao, S.3
Martinez, C.4
He, G.5
Zhou, Z.6
Huang, X.7
Lee, J.H.8
Zhang, H.9
Shen, Y.10
Wang, H.11
Deng, X.W.12
-
39
-
-
26444525682
-
Arabidopsis H+-PPase AVP1 regulates auxinmediated organ development
-
Li, J., et al. (2005). Arabidopsis H+-PPase AVP1 regulates auxinmediated organ development. Science 310: 121-125.
-
(2005)
Science
, vol.310
, pp. 121-125
-
-
Li, J.1
-
40
-
-
3342927934
-
Role of transposable elements in heterochromatinand epigenetic control
-
Lippman, Z., et al. (2004). Role of transposable elements in heterochromatinand epigenetic control. Nature 430: 471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
-
41
-
-
33846543858
-
Heterosis: Revisiting the magic
-
Lippman, Z.B., and Zamir, D. (2007). Heterosis: Revisiting the magic. Trends Genet. 23: 60-66.
-
(2007)
Trends Genet
, vol.23
, pp. 60-66
-
-
Lippman, Z.B.1
Zamir, D.2
-
42
-
-
66449121652
-
Finding the fifth base: Genome-wide sequencing of cytosine methylation
-
Lister, R., and Ecker, J.R. (2009). Finding the fifth base: Genome-wide sequencing of cytosine methylation. Genome Res. 19: 959-966.
-
(2009)
Genome Res
, vol.19
, pp. 959-966
-
-
Lister, R.1
Ecker, J.R.2
-
43
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister, R., O'Malley, R.C., Tonti-Filippini, J., Gregory, B.D., Berry, C.C., Millar, A.H., and Ecker, J.R. (2008). Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133: 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
44
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister, R., et al. (2011). Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471: 68-73.
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
-
45
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister, R., et al. (2009). Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
-
46
-
-
33746513103
-
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
-
Manning, K., Tör, M., Poole, M., Hong, Y., Thompson, A.J., King, G.J., Giovannoni, J.J., and Seymour, G.B. (2006). A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat. Genet. 38: 948-952.
-
(2006)
Nat. Genet.
, vol.38
, pp. 948-952
-
-
Manning, K.1
Tör, M.2
Poole, M.3
Hong, Y.4
Thompson, A.J.5
King, G.J.6
Giovannoni, J.J.7
Seymour, G.B.8
-
47
-
-
0035839055
-
DNA methylation and epigenetic inheritance in plants and filamentous fungi
-
Martienssen, R.A., and Colot, V. (2001). DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293: 1070-1074.
-
(2001)
Science
, vol.293
, pp. 1070-1074
-
-
Martienssen, R.A.1
Colot, V.2
-
48
-
-
8744234971
-
RNA-directed DNA methylation
-
Mathieu, O., and Bender, J. (2004). RNA-directed DNA methylation. J. Cell Sci. 117: 4881-4888.
-
(2004)
J. Cell Sci.
, vol.117
, pp. 4881-4888
-
-
Mathieu, O.1
Bender, J.2
-
49
-
-
75849142760
-
QTL analysis of early stage heterosis for biomass in Arabidopsis
-
Meyer, R.C., Kusterer, B., Lisec, J., Steinfath, M., Becher, M., Scharr, H., Melchinger, A.E., Selbig, J., Schurr, U., Willmitzer, L., and Altmann, T. (2010). QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor. Appl. Genet. 120: 227-237.
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 227-237
-
-
Meyer, R.C.1
Kusterer, B.2
Lisec, J.3
Steinfath, M.4
Becher, M.5
Scharr, H.6
Melchinger, A.E.7
Selbig, J.8
Schurr, U.9
Willmitzer, L.10
Altmann, T.11
-
50
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide
-
Mi, S., et al. (2008). Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
-
51
-
-
75849144978
-
DNA methylation in diploid inbred lines of potatoes and its possible role in the regulation of heterosis
-
Nakamura, S., and Hosaka, K. (2010). DNA methylation in diploid inbred lines of potatoes and its possible role in the regulation of heterosis. Theor. Appl. Genet. 120: 205-214.
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 205-214
-
-
Nakamura, S.1
Hosaka, K.2
-
52
-
-
58249105076
-
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
-
Ni, Z., Kim, E.D., Ha, M., Lackey, E., Liu, J., Zhang, Y., Sun, Q., and Chen, Z.J. (2009). Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457: 327-331.
-
(2009)
Nature
, vol.457
, pp. 327-331
-
-
Ni, Z.1
Kim, E.D.2
Ha, M.3
Lackey, E.4
Liu, J.5
Zhang, Y.6
Sun, Q.7
Chen, Z.J.8
-
53
-
-
0000927158
-
Requirement of the auxin polar transport system in early stages of Arabidopsis floral bud formation
-
Okada, K., Ueda, J., Komaki, M.K., Bell, C.J., and Shimura, Y. (1991). Requirement of the auxin polar transport system in early stages of Arabidopsis floral bud formation. Plant Cell 3: 677-684.
-
(1991)
Plant Cell
, vol.3
, pp. 677-684
-
-
Okada, K.1
Ueda, J.2
Komaki, M.K.3
Bell, C.J.4
Shimura, Y.5
-
54
-
-
0001357490
-
Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene
-
Park, D.H., Somers, D.E., Kim, Y.S., Choy, Y.H., Lim, H.K., Soh, M.S., Kim, H.J., Kay, S.A., and Nam, H.G. (1999). Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285: 1579-1582.
-
(1999)
Science
, vol.285
, pp. 1579-1582
-
-
Park, D.H.1
Somers, D.E.2
Kim, Y.S.3
Choy, Y.H.4
Lim, H.K.5
Soh, M.S.6
Kim, H.J.7
Kay, S.A.8
Nam, H.G.9
-
55
-
-
78650069691
-
Expression of an Arabidopsis vacuolar H+- pyrophosphatase gene (AVP1) in cotton improves drought- and salt tolerance and increases fibre yield in the field conditions
-
Pasapula, V., et al. (2011). Expression of an Arabidopsis vacuolar H+- pyrophosphatase gene (AVP1) in cotton improves drought- and salt tolerance and increases fibre yield in the field conditions. Plant Biotechnol. J. 9: 88-99.
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 88-99
-
-
Pasapula, V.1
-
56
-
-
3142675769
-
Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana
-
Peer, W.A., Bandyopadhyay, A., Blakeslee, J.J., Makam, S.N., Chen, R.J., Masson, P.H., and Murphy, A.S. (2004). Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. Plant Cell 16: 1898-1911.
-
(2004)
Plant Cell
, vol.16
, pp. 1898-1911
-
-
Peer, W.A.1
Bandyopadhyay, A.2
Blakeslee, J.J.3
Makam, S.N.4
Chen, R.J.5
Masson, P.H.6
Murphy, A.S.7
-
57
-
-
52049124217
-
Genetic analysis of heterosis for yield and yield components in rapeseed (Brassica napus L.) by quantitative trait locus mapping
-
Radoev, M., Becker, H.C., and Ecke, W. (2008). Genetic analysis of heterosis for yield and yield components in rapeseed (Brassica napus L.) by quantitative trait locus mapping. Genetics 179: 1547-1558.
-
(2008)
Genetics
, vol.179
, pp. 1547-1558
-
-
Radoev, M.1
Becker, H.C.2
Ecke, W.3
-
58
-
-
0029765771
-
Demethylation-induced developmental pleiotropy in Arabidopsis
-
Ronemus, M.J., Galbiati, M., Ticknor, C., Chen, J., and Dellaporta, S.L. (1996). Demethylation-induced developmental pleiotropy in Arabidopsis. Science 273: 654-657.
-
(1996)
Science
, vol.273
, pp. 654-657
-
-
Ronemus, M.J.1
Galbiati, M.2
Ticknor, C.3
Chen, J.4
Dellaporta, S.L.5
-
59
-
-
33748340443
-
Overdominant quantitative trait loci for yield and fitness in tomato
-
Semel, Y., Nissenbaum, J., Menda, N., Zinder, M., Krieger, U., Issman, N., Pleban, T., Lippman, Z., Gur, A., and Zamir, D. (2006). Overdominant quantitative trait loci for yield and fitness in tomato. Proc. Natl. Acad. Sci. USA 103: 12981-12986.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 12981-12986
-
-
Semel, Y.1
Nissenbaum, J.2
Menda, N.3
Zinder, M.4
Krieger, U.5
Issman, N.6
Pleban, T.7
Lippman, Z.8
Gur, A.9
Zamir, D.10
-
60
-
-
33751237950
-
Variation in the epigenetic silencing of FLC contributes to natural variation in Arabidopsis vernalization response
-
Shindo, C., Lister, C., Crevillen, P., Nordborg, M., and Dean, C. (2006). Variation in the epigenetic silencing of FLC contributes to natural variation in Arabidopsis vernalization response. Genes Dev. 20: 3079-3083.
-
(2006)
Genes Dev
, vol.20
, pp. 3079-3083
-
-
Shindo, C.1
Lister, C.2
Crevillen, P.3
Nordborg, M.4
Dean, C.5
-
61
-
-
0030292054
-
Flavonoid biosynthesis: "New" functions for an "old" pathway
-
Shirley, B.W. (1996). Flavonoid biosynthesis: "New" functions for an "old" pathway. Trends Plant Sci. 1: 377-382.
-
(1996)
Trends Plant Sci
, vol.1
, pp. 377-382
-
-
Shirley, B.W.1
-
62
-
-
78649853497
-
Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice
-
Song, G.S., et al. (2010). Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice. Mol. Plant 3: 1012-1025.
-
(2010)
Mol Plant
, vol.3
, pp. 1012-1025
-
-
Song, G.S.1
-
63
-
-
33847701258
-
Allelic variation and heterosis in maize: How do two halves make more than a whole?
-
Springer, N.M., and Stupar, R.M. (2007). Allelic variation and heterosis in maize: How do two halves make more than a whole? Genome Res. 17: 264-275.
-
(2007)
Genome Res
, vol.17
, pp. 264-275
-
-
Springer, N.M.1
Stupar, R.M.2
-
64
-
-
0034604423
-
Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog
-
Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Más, P., Panda, S., Kreps, J.A., and Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289: 768-771.
-
(2000)
Science
, vol.289
, pp. 768-771
-
-
Strayer, C.1
Oyama, T.2
Schultz, T.F.3
Raman, R.4
Somers, D.E.5
Más, P.6
Panda, S.7
Kreps, J.A.8
Kay, S.A.9
-
65
-
-
0041806583
-
Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin
-
Tariq, M., Saze, H., Probst, A.V., Lichota, J., Habu, Y., and Paszkowski, J. (2003). Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin. Proc. Natl. Acad. Sci. USA 100: 8823-8827.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8823-8827
-
-
Tariq, M.1
Saze, H.2
Probst, A.V.3
Lichota, J.4
Habu, Y.5
Paszkowski, J.6
-
66
-
-
77953807770
-
Repeat elements and the Arabidopsis DNA methylation landscape
-
Teixeira, F.K., and Colot, V. (2010). Repeat elements and the Arabidopsis DNA methylation landscape. Heredity (Edinb.) 105: 14-23.
-
(2010)
Heredity (Edinb.)
, vol.105
, pp. 14-23
-
-
Teixeira, F.K.1
Colot, V.2
-
67
-
-
77957300063
-
Kinetic and functional analysis of the small RNA methyltransferase HEN1: The catalytic domain is essential for preferential modification of duplex RNA
-
Vilkaitis, G., Plotnikova, A., and Klimasauskas, S. (2010). Kinetic and functional analysis of the small RNA methyltransferase HEN1: The catalytic domain is essential for preferential modification of duplex RNA. RNA 16: 1935-1942.
-
(2010)
RNA
, vol.16
, pp. 1935-1942
-
-
Vilkaitis, G.1
Plotnikova, A.2
Klimasauskas, S.3
-
68
-
-
33644762929
-
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
-
Wang, J., Tian, L., Lee, H.S., Wei, N.E., Jiang, H., Watson, B., Madlung, A., Osborn, T.C., Doerge, R.W., Comai, L., and Chen, Z. J. (2006). Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172: 507-517.
-
(2006)
Genetics
, vol.172
, pp. 507-517
-
-
Wang, J.1
Tian, L.2
Lee, H.S.3
Wei, N.E.4
Jiang, H.5
Watson, B.6
Madlung, A.7
Osborn, T.C.8
Doerge, R.W.9
Comai, L.10
Chen, Z.J.11
-
69
-
-
75249095274
-
DEGseq: An R package for identifying differentially expressed genes from RNA-seq data
-
Wang, L., Feng, Z., Wang, X., Wang, X., and Zhang, X. (2010). DEGseq: An R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
-
(2010)
Bioinformatics
, vol.26
, pp. 136-138
-
-
Wang, L.1
Feng, Z.2
Wang, X.3
Wang, X.4
Zhang, X.5
-
70
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang, X., Elling, A.A., Li, X., Li, N., Peng, Z., He, G., Sun, H., Qi, Y., Liu, X.S., and Deng, X.W. (2009). Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 21: 1053-1069.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.1
Elling, A.A.2
Li, X.3
Li, N.4
Peng, Z.5
He, G.6
Sun, H.7
Qi, Y.8
Liu, X.S.9
Deng, X.W.10
-
71
-
-
0028031830
-
RNA-directed de novo methylation of genomic sequences in plants
-
Wassenegger, M., Heimes, S., Riedel, L., and Sänger, H.L. (1994). RNA-directed de novo methylation of genomic sequences in plants. Cell 76: 567-576.
-
(1994)
Cell
, vol.76
, pp. 567-576
-
-
Wassenegger, M.1
Heimes, S.2
Riedel, L.3
Sänger, H.L.4
-
72
-
-
66049086034
-
A transcriptomic analysis of superhybrid rice LYP9 and its parents
-
Wei, G., et al. (2009). A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proc. Natl. Acad. Sci. USA 106: 7695-7701.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 7695-7701
-
-
Wei, G.1
-
73
-
-
0033635955
-
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
-
Xie, Q., Frugis, G., Colgan, D., and Chua, N.H. (2000). Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 14: 3024-3036.
-
(2000)
Genes Dev
, vol.14
, pp. 3024-3036
-
-
Xie, Q.1
Frugis, G.2
Colgan, D.3
Chua, N.H.4
-
74
-
-
33845967084
-
Regulation of output from the plant circadian clock
-
Yakir, E., Hilman, D., Harir, Y., and Green, R.M. (2007). Regulation of output from the plant circadian clock. FEBS J. 274: 335-345.
-
(2007)
FEBS J
, vol.274
, pp. 335-345
-
-
Yakir, E.1
Hilman, D.2
Harir, Y.3
Green, R.M.4
-
75
-
-
0034871562
-
Signaling networks in the plant circadian system
-
Yanovsky, M.J., and Kay, S.A. (2001). Signaling networks in the plant circadian system. Curr. Opin. Plant Biol. 4: 429-435.
-
(2001)
Curr. Opin. Plant Biol.
, vol.4
, pp. 429-435
-
-
Yanovsky, M.J.1
Kay, S.A.2
-
76
-
-
0030829363
-
Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid
-
Yu, S.B., Li, J.X., Xu, C.G., Tan, Y.F., Gao, Y.J., Li, X.H., Zhang, Q., and Saghai Maroof, M.A. (1997). Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc. Natl. Acad. Sci. USA 94: 9226-9231.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 9226-9231
-
-
Yu, S.B.1
Li, J.X.2
Xu, C.G.3
Tan, Y.F.4
Gao, Y.J.5
Li, X.H.6
Zhang, Q.7
Saghai Maroof, M.A.8
-
77
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach, A., McDaniel, I.E., Silva, P., and Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
78
-
-
66049146171
-
A genomewide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids
-
Zhang, H.Y., He, H., Chen, L.B., Li, L., Liang, M.Z., Wang, X.F., Liu, X.G., He, G.M., Chen, R.S., Ma, L.G., and Deng, X.W. (2008a). A genomewide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Mol. Plant 1: 720-731.
-
(2008)
Mol. Plant.
, vol.1
, pp. 720-731
-
-
Zhang, H.Y.1
He, H.2
Chen, L.B.3
Li, L.4
Liang, M.Z.5
Wang, X.F.6
Liu, X.G.7
He, G.M.8
Chen, R.S.9
Ma, L.G.10
Deng, X.W.11
-
79
-
-
42549085238
-
The epigenetic landscape of plants
-
Zhang, X. (2008). The epigenetic landscape of plants. Science 320: 489-492.
-
(2008)
Science
, vol.320
, pp. 489-492
-
-
Zhang, X.1
-
80
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang, X., Yazaki, J., Sundaresan, A., Cokus, S., Chan, S.W., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R. (2006). Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126: 1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
Ecker, J.R.11
-
81
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W., and Liu, X.S. (2008b). Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
82
-
-
48049110946
-
DNA methylation in cotton hybrids and their parents
-
Zhao, Y., Yu, S., Xing, C., Fan, S., and Song, M. (2008). [DNA methylation in cotton hybrids and their parents]. Mol. Biol. (Mosk.) 42: 195-205.
-
(2008)
Mol. Biol. (Mosk.)
, vol.42
, pp. 195-205
-
-
Zhao, Y.1
Yu, S.2
Xing, C.3
Fan, S.4
Song, M.5
-
83
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T., and Henikoff, S. (2007). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39: 61-69.
-
(2007)
Nat. Genet.
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
|