메뉴 건너뛰기




Volumn 36, Issue 20, 2008, Pages 6429-6438

Evolution of Arabidopsis MIR genes generates novel microRNA classes

Author keywords

[No Author keywords available]

Indexed keywords

DICER; DICER LIKE 1; DICER LIKE 2; DICER LIKE 3; DICER LIKE 4; LONG MICRORNA; MICRORNA; UNCLASSIFIED DRUG;

EID: 56649102410     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn670     Document Type: Article
Times cited : (156)

References (51)
  • 2
    • 35348996554 scopus 로고    scopus 로고
    • Specialization and evolution of endogenous small RNA pathways
    • Chapman,E.J. and Carrington,J.C. (2007) Specialization and evolution of endogenous small RNA pathways. Nat. Rev. Genet., 8, 884-896.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 884-896
    • Chapman, E.J.1    Carrington, J.C.2
  • 3
    • 28044469038 scopus 로고    scopus 로고
    • RNA silencing systems and their relevance to plant development
    • Meins,F. Jr, Si-Ammour,A. and Blevins,T. (2005) RNA silencing systems and their relevance to plant development. Annu. Rev. Cell Dev. Biol. 21, 297-318.
    • (2005) Annu. Rev. Cell Dev. Biol , vol.21 , pp. 297-318
    • Meins Jr, F.1    Si-Ammour, A.2    Blevins, T.3
  • 4
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory,A.C. and Vaucheret,H. (2006) Functions of microRNAs and related small RNAs in plants. Nat. Genet., 38, S31-S36.
    • (2006) Nat. Genet , vol.38
    • Mallory, A.C.1    Vaucheret, H.2
  • 5
    • 33747772001 scopus 로고    scopus 로고
    • Arabidopsis endogenous small RNAs: Highways and byways
    • Vazquez,F. (2006) Arabidopsis endogenous small RNAs: Highways and byways. Trends Plant Sci., 11, 460-468.
    • (2006) Trends Plant Sci , vol.11 , pp. 460-468
    • Vazquez, F.1
  • 6
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • Sunkar,R., Chinnusamy,V., Zhu,J. and Zhu,J.K. (2007) Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci., 12, 301-309.
    • (2007) Trends Plant Sci , vol.12 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.3    Zhu, J.K.4
  • 7
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli,V., Mallory,A.C., Bartel,D.P. and Vaucheret,H. (2005) Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol., 15 1494-1500.
    • (2005) Curr. Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 8
    • 33746561720 scopus 로고    scopus 로고
    • An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs
    • Bouche,N., Lauressergues,D., Gasciolli,V. and Vaucheret,H. (2006) An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J., 25, 3347-3356.
    • (2006) EMBO J , vol.25 , pp. 3347-3356
    • Bouche, N.1    Lauressergues, D.2    Gasciolli, V.3    Vaucheret, H.4
  • 9
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson,I.R., Zhang,X., Lu,C., Johnson,L., Meyers,B.C., Green,P.J. and Jacobsen,S.E. (2006) Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet., 38, 721-725.
    • (2006) Nat. Genet , vol.38 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3    Johnson, L.4    Meyers, B.C.5    Green, P.J.6    Jacobsen, S.E.7
  • 11
    • 33845864469 scopus 로고    scopus 로고
    • RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins
    • Moissiard,G. and Voinnet,O. (2006) RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc. Natl Acad. Sci. USA, 103 19593-19598.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 19593-19598
    • Moissiard, G.1    Voinnet, O.2
  • 14
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan,R., Vaucheret,H., Trejo,J. and Bartel,D.P. (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev., 20, 3407-3425.
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 15
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • Allen,E., Xie,Z., Gustafson,A.M., Sung,G.H., Spatafora,J.W. and Carrington,J.C. (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet., 36, 1282-1290.
    • (2004) Nat. Genet , vol.36 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 17
    • 17444430392 scopus 로고    scopus 로고
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen,E., Xie,Z., Gustafson,A.M. and Carrington,J.C. (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 121, 207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 18
    • 1542350745 scopus 로고    scopus 로고
    • The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
    • Vazquez,F., Gasciolli,V., Crete,P. and Vaucheret,H. (2004) The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr. Biol., 14, 346-351.
    • (2004) Curr. Biol , vol.14 , pp. 346-351
    • Vazquez, F.1    Gasciolli, V.2    Crete, P.3    Vaucheret, H.4
  • 19
    • 0033385170 scopus 로고    scopus 로고
    • Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems
    • Jacobsen,S.E., Running,M.P. and Meyerowitz,E.M. (1999) Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development, 126, 5231-5243.
    • (1999) Development , vol.126 , pp. 5231-5243
    • Jacobsen, S.E.1    Running, M.P.2    Meyerowitz, E.M.3
  • 20
    • 0037015239 scopus 로고    scopus 로고
    • CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    • Park,W., Li,J., Song,R., Messing,J. and Chen,X. (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol., 12, 1484-1495.
    • (2002) Curr. Biol , vol.12 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 24
    • 4344637081 scopus 로고    scopus 로고
    • Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
    • Kurihara,Y. and Watanabe,Y. (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc. Natl Acad. Sci. USA, 101, 12753-12758.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 12753-12758
    • Kurihara, Y.1    Watanabe, Y.2
  • 25
    • 33645967150 scopus 로고    scopus 로고
    • AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
    • Vaucheret,H., Mallory,A.C. and Bartel,D.P. (2006) AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol. Cell, 22, 129-136.
    • (2006) Mol. Cell , vol.22 , pp. 129-136
    • Vaucheret, H.1    Mallory, A.C.2    Bartel, D.P.3
  • 27
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • Zhang,B., Pan,X., Cannon,C.H., Cobb,G.P. and Anderson,T.A. (2006) Conservation and divergence of plant microRNA genes. Plant J., 46, 243-259.
    • (2006) Plant J , vol.46 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 29
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • Llave,C., Kasschau,K.D., Rector,M.A. and Carrington,J.C. (2002) Endogenous and silencing-associated small RNAs in plants. Plant Cell 14, 1605-1619.
    • (2002) Plant Cell , vol.14 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 30
    • 12744262431 scopus 로고    scopus 로고
    • Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    • Wang,X.J., Reyes,J.L., Chua,N.H. and Gaasterland,T. (2004) Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol., 5, R65.
    • (2004) Genome Biol , vol.5
    • Wang, X.J.1    Reyes, J.L.2    Chua, N.H.3    Gaasterland, T.4
  • 31
    • 2442650370 scopus 로고    scopus 로고
    • The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • Vaucheret,H., Vazquez,F., Crete,P. and Bartel,D.P. (2004) The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev., 18, 1187-1197.
    • (2004) Genes Dev , vol.18 , pp. 1187-1197
    • Vaucheret, H.1    Vazquez, F.2    Crete, P.3    Bartel, D.P.4
  • 32
    • 2942672580 scopus 로고    scopus 로고
    • Computational identi.cation of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades,M.W. and Bartel,D.P. (2004) Computational identi.cation of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell, 14, 787-799.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 33
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar,R. and Zhu,J.K. (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16, 2001-2019.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 34
    • 27844526222 scopus 로고    scopus 로고
    • A miRNA involved in phosphate-starvation response in Arabidopsis
    • Fujii,H., Chiou,T.J., Lin,S.I., Aung,K. and Zhu,J.K. (2005) A miRNA involved in phosphate-starvation response in Arabidopsis. Curr. Biol. 15, 2038-2043.
    • (2005) Curr. Biol , vol.15 , pp. 2038-2043
    • Fujii, H.1    Chiou, T.J.2    Lin, S.I.3    Aung, K.4    Zhu, J.K.5
  • 35
    • 34247369438 scopus 로고    scopus 로고
    • Redundancy and specialization among plant microRNAs: Role of the MIR164 family in developmental robustness
    • Sieber,P., Wellmer,F., Gheyselinck,J., Riechmann,J.L. and Meyerowitz,E.M. (2007) Redundancy and specialization among plant microRNAs: Role of the MIR164 family in developmental robustness. Development, 134, 1051-1060.
    • (2007) Development , vol.134 , pp. 1051-1060
    • Sieber, P.1    Wellmer, F.2    Gheyselinck, J.3    Riechmann, J.L.4    Meyerowitz, E.M.5
  • 36
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • Mallory,A.C., Dugas,D.V., Bartel,D.P. and Bartel,B. (2004) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr. Biol., 14, 1035-1046.
    • (2004) Curr. Biol , vol.14 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 37
    • 4444275405 scopus 로고    scopus 로고
    • MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
    • Laufs,P., Peaucelle,A., Morin,H. and Traas,J. (2004) MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development, 131, 4311-4322.
    • (2004) Development , vol.131 , pp. 4311-4322
    • Laufs, P.1    Peaucelle, A.2    Morin, H.3    Traas, J.4
  • 38
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 50 terminal nucleotide
    • Mi,S., Cai,T., Hu,Y., Chen,Y., Hodges,E., Ni,F., Wu,L., Li,S., Zhou,H., Long,C. et al. (2008) Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 50 terminal nucleotide. Cell. 133, 116-127.
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.1    Cai, T.2    Hu, Y.3    Chen, Y.4    Hodges, E.5    Ni, F.6    Wu, L.7    Li, S.8    Zhou, H.9    Long, C.10
  • 40
    • 46149088681 scopus 로고    scopus 로고
    • Plant ARGONAUTE
    • Vaucheret,H. (2008) Plant ARGONAUTE. Trends Plant Sci., 13, 350-358.
    • (2008) Trends Plant Sci , vol.13 , pp. 350-358
    • Vaucheret, H.1
  • 41
    • 0036834508 scopus 로고    scopus 로고
    • DICER-LIKE1: Blind men and elephants in Arabidopsis development
    • Schauer,S.E., Jacobsen,S.E., Meinke,D.W. and Ray,A. (2002) DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci. 7, 487-491.
    • (2002) Trends Plant Sci , vol.7 , pp. 487-491
    • Schauer, S.E.1    Jacobsen, S.E.2    Meinke, D.W.3    Ray, A.4
  • 42
    • 34250759456 scopus 로고    scopus 로고
    • DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana
    • Schmitz,R.J., Hong,L., Fitzpatrick,K.E. and Amasino,R.M. (2007) DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana. Genetics, 176, 1359-1362.
    • (2007) Genetics , vol.176 , pp. 1359-1362
    • Schmitz, R.J.1    Hong, L.2    Fitzpatrick, K.E.3    Amasino, R.M.4
  • 43
    • 4644286235 scopus 로고    scopus 로고
    • SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
    • Peragine,A., Yoshikawa,M., Wu,G., Albrecht,H.L. and Poethig,R.S. (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev., 18, 2368-2379.
    • (2004) Genes Dev , vol.18 , pp. 2368-2379
    • Peragine, A.1    Yoshikawa, M.2    Wu, G.3    Albrecht, H.L.4    Poethig, R.S.5
  • 44
    • 50649087826 scopus 로고    scopus 로고
    • Activity range of Arabidopsis small RNAs derived from di.erent biogenesis pathways
    • Tretter,E.M., Alvarez,J.P., Eshed,Y. and Bowman,J.L. (2008) Activity range of Arabidopsis small RNAs derived from di.erent biogenesis pathways. Plant Physiol., 147, 58-62.
    • (2008) Plant Physiol , vol.147 , pp. 58-62
    • Tretter, E.M.1    Alvarez, J.P.2    Eshed, Y.3    Bowman, J.L.4
  • 45
    • 28444464041 scopus 로고    scopus 로고
    • DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal
    • Dunoyer,P., Himber,C. and Voinnet,O. (2005) DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat. Genet., 37, 1356-1360.
    • (2005) Nat. Genet , vol.37 , pp. 1356-1360
    • Dunoyer, P.1    Himber, C.2    Voinnet, O.3
  • 46
    • 34347355440 scopus 로고    scopus 로고
    • miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • Molnar,A., Schwach,F., Studholme,D.J., Thuenemann,E.C. and Baulcombe,D.C. (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447, 1126-1129.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 47
    • 34249093687 scopus 로고    scopus 로고
    • A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    • Zhao,T., Li,G., Mi,S., Li,S., Hannon,G.J., Wang,X.J. and Qi,Y. (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev., 21, 1190-1203.
    • (2007) Genes Dev , vol.21 , pp. 1190-1203
    • Zhao, T.1    Li, G.2    Mi, S.3    Li, S.4    Hannon, G.J.5    Wang, X.J.6    Qi, Y.7
  • 48
    • 1842484780 scopus 로고    scopus 로고
    • Gene regulation: Ancient microRNA target sequences in plants
    • Floyd,S.K. and Bowman,J.L. (2004) Gene regulation: Ancient microRNA target sequences in plants. Nature, 428, 485-486.
    • (2004) Nature , vol.428 , pp. 485-486
    • Floyd, S.K.1    Bowman, J.L.2
  • 49
    • 34548473571 scopus 로고    scopus 로고
    • Large-scale identi.cation of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants
    • Barakat,A., Wall,K., Leebens-Mack,J., Wang,Y.J., Carlson,J.E. and Depamphilis,C.W. (2007) Large-scale identi.cation of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J., 51, 991-1003.
    • (2007) Plant J , vol.51 , pp. 991-1003
    • Barakat, A.1    Wall, K.2    Leebens-Mack, J.3    Wang, Y.J.4    Carlson, J.E.5    Depamphilis, C.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.