메뉴 건너뛰기




Volumn 37, Issue 8, 2005, Pages 809-819

Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HISTONE H3; LYSINE; RIBOSOME DNA; RNA; RNA POLYMERASE II; TRANSFER RNA;

EID: 23044498502     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng1602     Document Type: Article
Times cited : (408)

References (49)
  • 1
    • 0035839110 scopus 로고    scopus 로고
    • Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
    • Noma, K., Allis, C.D. & Grewal, S.I.S. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science 293, 1150-1155 (2001).
    • (2001) Science , vol.293 , pp. 1150-1155
    • Noma, K.1    Allis, C.D.2    Grewal, S.I.S.3
  • 2
    • 0035964869 scopus 로고    scopus 로고
    • Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus
    • Litt, M.D., Simpson, M., Gaszner, M., Allis, C.D. & Felsenfeld, G. Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus. Science 293, 2453-2455 (2001).
    • (2001) Science , vol.293 , pp. 2453-2455
    • Litt, M.D.1    Simpson, M.2    Gaszner, M.3    Allis, C.D.4    Felsenfeld, G.5
  • 3
    • 0034632829 scopus 로고    scopus 로고
    • Regulation of chromatin structure by site-specific histone H3 methyl-transferases
    • Rea, S. et al. Regulation of chromatin structure by site-specific histone H3 methyl-transferases. Nature 406, 593-599 (2000).
    • (2000) Nature , vol.406 , pp. 593-599
    • Rea, S.1
  • 4
    • 0035815360 scopus 로고    scopus 로고
    • Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
    • Nakayama, J., Rice, J.C., Strahl, B.D., Allis, C.D. & Grewal, S.I.S. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292, 110-113 (2001).
    • (2001) Science , vol.292 , pp. 110-113
    • Nakayama, J.1    Rice, J.C.2    Strahl, B.D.3    Allis, C.D.4    Grewal, S.I.S.5
  • 5
    • 0035282458 scopus 로고    scopus 로고
    • Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
    • Bannister, A.J. et al. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410, 120-124 (2001).
    • (2001) Nature , vol.410 , pp. 120-124
    • Bannister, A.J.1
  • 6
    • 0037183856 scopus 로고    scopus 로고
    • Establishment and maintenance of a heterochromatin domain
    • Hall, I.M. et al. Establishment and maintenance of a heterochromatin domain. Science 297, 2232-2237 (2002).
    • (2002) Science , vol.297 , pp. 2232-2237
    • Hall, I.M.1
  • 7
    • 0037672689 scopus 로고    scopus 로고
    • An epigenetic road map for histone lysine methylation
    • Lachner, M., O'Sullivan, R.J. & Jenuwein, T. An epigenetic road map for histone lysine methylation. J. Cell Sci. 116, 2117-2124 (2003).
    • (2003) J. Cell Sci. , vol.116 , pp. 2117-2124
    • Lachner, M.1    O'Sullivan, R.J.2    Jenuwein, T.3
  • 8
    • 2342517250 scopus 로고    scopus 로고
    • Regulation of heterochromatin by histone methylation and small RNAs
    • Grewal, S.I. & Rice, J.C. Regulation of heterochromatin by histone methylation and small RNAs. Curr. Opin. Cell Biol. 16, 230-238 (2004).
    • (2004) Curr. Opin. Cell Biol. , vol.16 , pp. 230-238
    • Grewal, S.I.1    Rice, J.C.2
  • 9
    • 1942535718 scopus 로고    scopus 로고
    • Small RNAs in genome rearrangement in Tetrahymena
    • Mochizuki, K. & Gorovsky, M.A. Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev. 14, 181-187 (2004).
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 181-187
    • Mochizuki, K.1    Gorovsky, M.A.2
  • 10
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • Chan, S.W., Henderson, I.R. & Jacobsen, S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6, 351-360 (2005).
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 351-360
    • Chan, S.W.1    Henderson, I.R.2    Jacobsen, S.E.3
  • 11
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke, M.A. & Birchler, J.A. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6, 24-35 (2005).
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 12
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • Volpe, T.A. et al. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837 (2002).
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1
  • 13
    • 0942279635 scopus 로고    scopus 로고
    • RNAi-mediated targeting of heterochromatin by the RITS complex
    • Verdel, A. et al. RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303, 672-676 (2004).
    • (2004) Science , vol.303 , pp. 672-676
    • Verdel, A.1
  • 14
    • 10644221797 scopus 로고    scopus 로고
    • RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing
    • Noma, K. et al. RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing. Nat. Genet. 36, 1174-1180 (2004).
    • (2004) Nat. Genet. , vol.36 , pp. 1174-1180
    • Noma, K.1
  • 15
    • 10944248935 scopus 로고    scopus 로고
    • Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs
    • Motamedi, M.R. et al. Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell 119, 789-802 (2004).
    • (2004) Cell , vol.119 , pp. 789-802
    • Motamedi, M.R.1
  • 16
    • 11844265935 scopus 로고    scopus 로고
    • RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production
    • Sugiyama, T., Cam, H., Verdel, A., Moazed, D. & Grewal, S.I.S. RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production. Proc. Natl. Acad. Sci. USA 102, 152-157 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 152-157
    • Sugiyama, T.1    Cam, H.2    Verdel, A.3    Moazed, D.4    Grewal, S.I.S.5
  • 17
    • 3342927934 scopus 로고    scopus 로고
    • Role of transposable elements in heterochromatin and epigenetic control
    • Lippman, Z. et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 430, 471-476 (2004).
    • (2004) Nature , vol.430 , pp. 471-476
    • Lippman, Z.1
  • 18
    • 15444372817 scopus 로고    scopus 로고
    • The profile of repeat-associated histone lysine methylation states in the mouse epigenome
    • Martens, J.H. et al. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J. 24, 800-812 (2005).
    • (2005) EMBO J. , vol.24 , pp. 800-812
    • Martens, J.H.1
  • 19
    • 0037148758 scopus 로고    scopus 로고
    • The genome sequence of Schizosaccharomyces pombe
    • Wood, V. et al. The genome sequence of Schizosaccharomyces pombe. Nature 415, 871-880 (2002).
    • (2002) Nature , vol.415 , pp. 871-880
    • Wood, V.1
  • 20
    • 6344285337 scopus 로고    scopus 로고
    • A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast
    • Sadaie, M., Iida, T., Urano, T. & Nakayama, J. A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast. EMBO J. 23, 3825-3835 (2004).
    • (2004) EMBO J. , vol.23 , pp. 3825-3835
    • Sadaie, M.1    Iida, T.2    Urano, T.3    Nakayama, J.4
  • 21
    • 0042831010 scopus 로고    scopus 로고
    • Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing
    • Schramke, V. & Allshire, R. Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing. Science 301, 1069-1074 (2003).
    • (2003) Science , vol.301 , pp. 1069-1074
    • Schramke, V.1    Allshire, R.2
  • 22
    • 0035797384 scopus 로고    scopus 로고
    • Rb targets histone H3 methylation and HP1 to promoters
    • Nielsen, S.J. et al. Rb targets histone H3 methylation and HP1 to promoters. Nature 412, 561-565 (2001).
    • (2001) Nature , vol.412 , pp. 561-565
    • Nielsen, S.J.1
  • 23
    • 8344264534 scopus 로고    scopus 로고
    • Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination
    • Jia, S., Yamada, T. & Grewal, S.I.S. Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination. Cell 119, 469-480 (2004).
    • (2004) Cell , vol.119 , pp. 469-480
    • Jia, S.1    Yamada, T.2    Grewal, S.I.S.3
  • 24
    • 0034175605 scopus 로고    scopus 로고
    • Distinct protein interaction domains and protein spreading in a complex centromere
    • Partridge, J.F., Borgstrom, B. & Allshire, R.C. Distinct protein interaction domains and protein spreading in a complex centromere. Genes Dev. 14, 783-791 (2000).
    • (2000) Genes Dev. , vol.14 , pp. 783-791
    • Partridge, J.F.1    Borgstrom, B.2    Allshire, R.C.3
  • 25
    • 0342646931 scopus 로고    scopus 로고
    • Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast
    • Takahashi, K., Chen, E.S. & Yanagida, M. Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast. Science 288, 2215-2219 (2000).
    • (2000) Science , vol.288 , pp. 2215-2219
    • Takahashi, K.1    Chen, E.S.2    Yanagida, M.3
  • 27
  • 28
    • 0034046082 scopus 로고    scopus 로고
    • Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations
    • Thon, G. & Verhein-Hansen, J. Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations. Genetics 155, 551-568 (2000).
    • (2000) Genetics , vol.155 , pp. 551-568
    • Thon, G.1    Verhein-Hansen, J.2
  • 29
    • 0038714132 scopus 로고    scopus 로고
    • Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast
    • Shankaranarayana, G.D., Motamedi, M.R., Moazed, D. & Grewal, S.I.S. Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast. Curr. Biol. 13, 1240-1246 (2003).
    • (2003) Curr. Biol. , vol.13 , pp. 1240-1246
    • Shankaranarayana, G.D.1    Motamedi, M.R.2    Moazed, D.3    Grewal, S.I.S.4
  • 30
    • 11844277040 scopus 로고    scopus 로고
    • Global effects on gene expression in fission yeast by silencing and RNA interference machineries
    • Hansen, K.R. et al. Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Mol. Cell. Biol. 25, 590-601 (2005).
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 590-601
    • Hansen, K.R.1
  • 31
    • 0141630486 scopus 로고    scopus 로고
    • Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe
    • Bowen, N.J., Jordan, I.K., Epstein, J.A., Wood, V. & Levin, H.L. Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe. Genome Res. 13, 1984-1997 (2003).
    • (2003) Genome Res. , vol.13 , pp. 1984-1997
    • Bowen, N.J.1    Jordan, I.K.2    Epstein, J.A.3    Wood, V.4    Levin, H.L.5
  • 32
    • 7544227521 scopus 로고    scopus 로고
    • Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin
    • Sullivan, B.A. & Karpen, G.H. Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin. Nat. Struct. Mol. Biol. 11, 1076-1083 (2004).
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 1076-1083
    • Sullivan, B.A.1    Karpen, G.H.2
  • 33
    • 14844362869 scopus 로고    scopus 로고
    • RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast
    • Petrie, V.J., Wuitschick, J.D., Givens, C.D., Kosinski, A.M. & Partridge, J.F. RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast. Mol. Cell. Biol. 25, 2331-2346 (2005).
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 2331-2346
    • Petrie, V.J.1    Wuitschick, J.D.2    Givens, C.D.3    Kosinski, A.M.4    Partridge, J.F.5
  • 34
    • 4644242349 scopus 로고    scopus 로고
    • RNA silencing in plants
    • Baulcombe, D. RNA silencing in plants. Nature 431, 356-363 (2004).
    • (2004) Nature , vol.431 , pp. 356-363
    • Baulcombe, D.1
  • 35
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • Llave, C., Kasschau, K.D., Rector, M.A. & Carrington, J.C. Endogenous and silencing-associated small RNAs in plants. Plant Cell 14, 1605-1619 (2002).
    • (2002) Plant Cell , vol.14 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 36
    • 0041941514 scopus 로고    scopus 로고
    • The small RNA profile during Drosophila melanogaster development
    • Aravin, A.A. et al. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5, 337-350 (2003).
    • (2003) Dev. Cell , vol.5 , pp. 337-350
    • Aravin, A.A.1
  • 37
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • Schwarz, D.S. et al. Asymmetry in the assembly of the RNAi enzyme complex. Cell 115, 199-208 (2003).
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1
  • 39
    • 0037072660 scopus 로고    scopus 로고
    • Small RNAs correspond to centromere heterochromatic repeats
    • Reinhart, B.J. & Bartel, D.P. Small RNAs correspond to centromere heterochromatic repeats. Science 297, 1831 (2002).
    • (2002) Science , vol.297 , pp. 1831
    • Reinhart, B.J.1    Bartel, D.P.2
  • 40
    • 3042521583 scopus 로고    scopus 로고
    • RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins
    • Jia, S., Noma, K. & Grewal, S.I.S. RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins. Science 304, 1971-1976 (2004).
    • (2004) Science , vol.304 , pp. 1971-1976
    • Jia, S.1    Noma, K.2    Grewal, S.I.S.3
  • 41
    • 0035899938 scopus 로고    scopus 로고
    • spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast
    • Kanoh, J. & Ishikawa, F. spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast. Curr. Biol. 11, 1624-1630 (2001).
    • (2001) Curr. Biol. , vol.11 , pp. 1624-1630
    • Kanoh, J.1    Ishikawa, F.2
  • 42
    • 19344374219 scopus 로고    scopus 로고
    • Genetic and functional diversification of small RNA pathways in plants
    • Xie, Z. et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2, E104 (2004).
    • (2004) PLoS Biol. , vol.2
    • Xie, Z.1
  • 43
    • 0345306117 scopus 로고    scopus 로고
    • Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
    • Sijen, T. & Plasterk, R.H. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426, 310-314 (2003).
    • (2003) Nature , vol.426 , pp. 310-314
    • Sijen, T.1    Plasterk, R.H.2
  • 44
    • 0037422606 scopus 로고    scopus 로고
    • RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast
    • Hall, I.M., Noma, K. & Grewal, S.I.S. RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast. Proc. Natl. Acad. Sci. USA 100, 193-198 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 193-198
    • Hall, I.M.1    Noma, K.2    Grewal, S.I.S.3
  • 45
    • 0036509836 scopus 로고    scopus 로고
    • Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component
    • Maison, C. et al. Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component. Nat. Genet. 30, 329-334 (2002).
    • (2002) Nat. Genet. , vol.30 , pp. 329-334
    • Maison, C.1
  • 46
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr, A.J., Jensen, M.B., Dalmay, T. & Baulcombe, D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 308, 118-120 (2005).
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 47
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera, Y. et al. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120, 613-622 (2005).
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1
  • 48
    • 22844447304 scopus 로고    scopus 로고
    • Atypical RNA polymerase subunits required for RNA-directed DNA methylation
    • advance online publication 29 May (doi-.10.1038/ng1580)
    • Kanno, T. et al. Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat. Genet., advance online publication 29 May 2005 (doi-.10.1038/ng1580).
    • (2005) Nat. Genet.
    • Kanno, T.1
  • 49
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21- and 22-nucleotide RNAs
    • Elbashir, S.M., Lendeckel, W. & Tuschl, T. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev. 15, 188-200 (2001).
    • (2001) Genes Dev. , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.