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Volumn 110, Issue 15, 2013, Pages 6027-6032

Regional control of histone H3 lysine 27 methylation in Neurospora

Author keywords

Epigenetic; Epigenomics; Facultative heterochromatin; KMT

Indexed keywords

HISTONE H3; LYSINE; POLYCOMB REPRESSIVE COMPLEX 2;

EID: 84876032224     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1303750110     Document Type: Article
Times cited : (124)

References (55)
  • 1
    • 18644383738 scopus 로고    scopus 로고
    • Histone methyltransferase activity of a Drosophila Polycomb group repressor complex
    • Müller J, et al. (2002) Histone methyltransferase activity of a Drosophila Polycomb group repressor complex. Cell 111(2):197-208.
    • (2002) Cell , vol.111 , Issue.2 , pp. 197-208
    • Müller, J.1
  • 2
    • 33845799903 scopus 로고    scopus 로고
    • Polycomb silencing mechanisms and the management of genomic programmes
    • Schwartz YB, Pirrotta V (2007) Polycomb silencing mechanisms and the management of genomic programmes. Nat Rev Genet 8(1):9-22.
    • (2007) Nat Rev Genet , vol.8 , Issue.1 , pp. 9-22
    • Schwartz, Y.B.1    Pirrotta, V.2
  • 3
    • 33845487512 scopus 로고    scopus 로고
    • SET domain protein lysine methyltransferases: Structure, specificity and catalysis
    • Qian C, Zhou MM (2006) SET domain protein lysine methyltransferases: Structure, specificity and catalysis. Cell Mol Life Sci 63(23):2755-2763.
    • (2006) Cell Mol Life Sci , vol.63 , Issue.23 , pp. 2755-2763
    • Qian, C.1    Zhou, M.M.2
  • 4
    • 17644410781 scopus 로고    scopus 로고
    • Nucleosome binding and histone methyltransferase activity of Drosophila PRC2
    • Nekrasov M, Wild B, Müller J (2005) Nucleosome binding and histone methyltransferase activity of Drosophila PRC2. EMBO Rep 6(4):348-353.
    • (2005) EMBO Rep , vol.6 , Issue.4 , pp. 348-353
    • Nekrasov, M.1    Wild, B.2    Müller, J.3
  • 5
    • 70349952171 scopus 로고    scopus 로고
    • Role of the polycomb protein EED in the propagation of repressive histone marks
    • Margueron R, et al. (2009) Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461(7265):762-767.
    • (2009) Nature , vol.461 , Issue.7265 , pp. 762-767
    • Margueron, R.1
  • 6
    • 78751662908 scopus 로고    scopus 로고
    • The Polycomb complex PRC2 and its mark in life
    • Margueron R, Reinberg D (2011) The Polycomb complex PRC2 and its mark in life. Nature 469(7330):343-349.
    • (2011) Nature , vol.469 , Issue.7330 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 7
    • 77954676296 scopus 로고    scopus 로고
    • Origin of the polycomb repressive complex 2 and gene silencing by an E (z) homolog in the unicellular alga Chlamydomonas
    • Shaver S, Casas-Mollano JA, Cerny RL, Cerutti H (2010) Origin of the polycomb repressive complex 2 and gene silencing by an E (z) homolog in the unicellular alga Chlamydomonas. Epigenetics 5(4):301-312.
    • (2010) Epigenetics , vol.5 , Issue.4 , pp. 301-312
    • Shaver, S.1    Casas-Mollano, J.A.2    Cerny, R.L.3    Cerutti, H.4
  • 8
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li B, Carey M, Workman JL (2007) The role of chromatin during transcription. Cell 128(4):707-719.
    • (2007) Cell , vol.128 , Issue.4 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 9
    • 79953754165 scopus 로고    scopus 로고
    • Polycomb repressive complex 2 controls the embryo-to-seedling phase transition
    • Bouyer D, et al. (2011) Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet 7(3):e1002014.
    • (2011) PLoS Genet , vol.7 , Issue.3
    • Bouyer, D.1
  • 10
    • 33646882068 scopus 로고    scopus 로고
    • Polycomb complexes repress developmental regulators in murine embryonic stem cells
    • Boyer LA, et al. (2006) Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441(7091):349-353.
    • (2006) Nature , vol.441 , Issue.7091 , pp. 349-353
    • Boyer, L.A.1
  • 11
    • 33646870495 scopus 로고    scopus 로고
    • Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
    • Bracken AP, Dietrich N, Pasini D, Hansen KH, Helin K (2006) Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. Genes Dev 20(9):1123-1136.
    • (2006) Genes Dev , vol.20 , Issue.9 , pp. 1123-1136
    • Bracken, A.P.1    Dietrich, N.2    Pasini, D.3    Hansen, K.H.4    Helin, K.5
  • 12
    • 33646865180 scopus 로고    scopus 로고
    • Control of developmental regulators by Polycomb in human embryonic stem cells
    • Lee TI, et al. (2006) Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125(2):301-313.
    • (2006) Cell , vol.125 , Issue.2 , pp. 301-313
    • Lee, T.I.1
  • 13
    • 76149142791 scopus 로고    scopus 로고
    • Polycomb complexes act redundantly to repress genomic repeats and genes
    • Leeb M, et al. (2010) Polycomb complexes act redundantly to repress genomic repeats and genes. Genes Dev 24(3):265-276.
    • (2010) Genes Dev , vol.24 , Issue.3 , pp. 265-276
    • Leeb, M.1
  • 14
    • 78449265382 scopus 로고    scopus 로고
    • H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation
    • Weinhofer I, Hehenberger E, Roszak P, Hennig L, Köhler C (2010) H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. PLoS Genet 6(10):6.
    • (2010) PLoS Genet , vol.6 , Issue.10 , pp. 6
    • Weinhofer, I.1    Hehenberger, E.2    Roszak, P.3    Hennig, L.4    Köhler, C.5
  • 15
    • 3042781030 scopus 로고    scopus 로고
    • Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27
    • Kirmizis A, et al. (2004) Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev 18(13):1592-1605.
    • (2004) Genes Dev , vol.18 , Issue.13 , pp. 1592-1605
    • Kirmizis, A.1
  • 16
    • 78751590899 scopus 로고    scopus 로고
    • Silencing chromatin: Comparing modes and mechanisms
    • Beisel C, Paro R (2011) Silencing chromatin: Comparing modes and mechanisms. Nat Rev Genet 12(2):123-135.
    • (2011) Nat Rev Genet , vol.12 , Issue.2 , pp. 123-135
    • Beisel, C.1    Paro, R.2
  • 17
    • 70349469565 scopus 로고    scopus 로고
    • Mechanisms of polycomb gene silencing: Knowns and unknowns
    • Simon JA, Kingston RE (2009) Mechanisms of polycomb gene silencing: Knowns and unknowns. Nat Rev Mol Cell Biol 10(10):697-708.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.10 , pp. 697-708
    • Simon, J.A.1    Kingston, R.E.2
  • 18
    • 59949085939 scopus 로고    scopus 로고
    • H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
    • Pauler FM, et al. (2009) H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res 19(2):221-233.
    • (2009) Genome Res , vol.19 , Issue.2 , pp. 221-233
    • Pauler, F.M.1
  • 19
    • 33745225872 scopus 로고    scopus 로고
    • Genome-wide analysis of Polycomb targets in Drosophila melanogaster
    • Schwartz YB, et al. (2006) Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat Genet 38(6):700-705.
    • (2006) Nat Genet , vol.38 , Issue.6 , pp. 700-705
    • Schwartz, Y.B.1
  • 20
    • 34249068213 scopus 로고    scopus 로고
    • Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
    • Zhang X, et al. (2007) Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 5(5):e129.
    • (2007) PLoS Biol , vol.5 , Issue.5
    • Zhang, X.1
  • 21
    • 23044475091 scopus 로고    scopus 로고
    • Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome
    • Lachner M, Sengupta R, Schotta G, Jenuwein T (2004) Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome. Cold Spring Harb Symp Quant Biol 69:209-218.
    • (2004) Cold Spring Harb Symp Quant Biol , vol.69 , pp. 209-218
    • Lachner, M.1    Sengupta, R.2    Schotta, G.3    Jenuwein, T.4
  • 22
    • 0037693853 scopus 로고    scopus 로고
    • Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa
    • Tamaru H, et al. (2003) Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa. Nat Genet 34(1):75-79.
    • (2003) Nat Genet , vol.34 , Issue.1 , pp. 75-79
    • Tamaru, H.1
  • 23
    • 61949250367 scopus 로고    scopus 로고
    • Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa
    • Lewis ZA, et al. (2009) Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Res 19(3):427-437.
    • (2009) Genome Res , vol.19 , Issue.3 , pp. 427-437
    • Lewis, Z.A.1
  • 24
    • 72949121660 scopus 로고    scopus 로고
    • The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9
    • Smith KM, et al. (2008) The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9. Epigenetics Chromatin 1(1):5.
    • (2008) Epigenetics Chromatin , vol.1 , Issue.1 , pp. 5
    • Smith, K.M.1
  • 25
    • 75649129700 scopus 로고    scopus 로고
    • Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis
    • Charron J-BF, He H, Elling AA, Deng XW (2009) Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis. Plant Cell 21(12):3732-3748.
    • (2009) Plant Cell , vol.21 , Issue.12 , pp. 3732-3748
    • Charron, J.-B.F.1    He, H.2    Elling, A.A.3    Deng, X.W.4
  • 26
    • 79955583542 scopus 로고    scopus 로고
    • Mapping and analysis of chromatin state dynamics in nine human cell types
    • Ernst J, et al. (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473(7345):43-49.
    • (2011) Nature , vol.473 , Issue.7345 , pp. 43-49
    • Ernst, J.1
  • 27
    • 79953060951 scopus 로고    scopus 로고
    • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
    • Kharchenko PV, et al. (2011) Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471(7339):480-485.
    • (2011) Nature , vol.471 , Issue.7339 , pp. 480-485
    • Kharchenko, P.V.1
  • 28
    • 33745604636 scopus 로고    scopus 로고
    • Suz12 binds to silenced regions of the genome in a cell-typespecific manner
    • Squazzo SL, et al. (2006) Suz12 binds to silenced regions of the genome in a cell-typespecific manner. Genome Res 16(7):890-900.
    • (2006) Genome Res , vol.16 , Issue.7 , pp. 890-900
    • Squazzo, S.L.1
  • 29
    • 77956995235 scopus 로고
    • Genetic and microbiological research techniques for Neurospora crassa
    • Davis RH, De Serres FJ (1970) Genetic and microbiological research techniques for Neurospora crassa. Methods Enzymol 17 A: 47-143.
    • (1970) Methods Enzymol , vol.17 A , pp. 47-143
    • Davis, R.H.1    De Serres, F.J.2
  • 30
    • 34250848131 scopus 로고    scopus 로고
    • Bird medium: An alternative to Vogel medium
    • Metzenberg RL (2004) Bird medium: An alternative to Vogel medium. Fungal Genet Newsl 51:19-20.
    • (2004) Fungal Genet Newsl , vol.51 , pp. 19-20
    • Metzenberg, R.L.1
  • 31
    • 12144287318 scopus 로고    scopus 로고
    • Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism
    • Borkovich KA, et al. (2004) Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol Rev 68(1):1-108.
    • (2004) Microbiol Mol Biol Rev , vol.68 , Issue.1 , pp. 1-108
    • Borkovich, K.A.1
  • 32
    • 33745924142 scopus 로고    scopus 로고
    • A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
    • Colot HV, et al. (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci USA 103(27):10352-10357.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.27 , pp. 10352-10357
    • Colot, H.V.1
  • 33
    • 33644866511 scopus 로고    scopus 로고
    • Chromatin assembly: A basic recipe with various flavours
    • Polo SE, Almouzni G (2006) Chromatin assembly: A basic recipe with various flavours. Curr Opin Genet Dev 16(2):104-111.
    • (2006) Curr Opin Genet Dev , vol.16 , Issue.2 , pp. 104-111
    • Polo, S.E.1    Almouzni, G.2
  • 34
    • 84855272671 scopus 로고    scopus 로고
    • Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation
    • Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU (2011) Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation. PLoS Genet 7(12):e1002423.
    • (2011) PLoS Genet , vol.7 , Issue.12
    • Adhvaryu, K.K.1    Berge, E.2    Tamaru, H.3    Freitag, M.4    Selker, E.U.5
  • 35
    • 79953046943 scopus 로고    scopus 로고
    • A cis-regulatory map of the Drosophila genome
    • Nègre N, et al. (2011) A cis-regulatory map of the Drosophila genome. Nature 471(7339):527-531.
    • (2011) Nature , vol.471 , Issue.7339 , pp. 527-531
    • Nègre, N.1
  • 36
    • 0037111831 scopus 로고    scopus 로고
    • Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein
    • Kuzmichev A, Nishioka K, Erdjument-Bromage H, Tempst P, Reinberg D (2002) Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. Genes Dev 16(22):2893-2905.
    • (2002) Genes Dev , vol.16 , Issue.22 , pp. 2893-2905
    • Kuzmichev, A.1    Nishioka, K.2    Erdjument-Bromage, H.3    Tempst, P.4    Reinberg, D.5
  • 37
    • 52649083766 scopus 로고    scopus 로고
    • Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa
    • Honda S, Selker EU (2008) Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa. Mol Cell Biol 28(19):6044-6055.
    • (2008) Mol Cell Biol , vol.28 , Issue.19 , pp. 6044-6055
    • Honda, S.1    Selker, E.U.2
  • 38
    • 79956066320 scopus 로고    scopus 로고
    • Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
    • Roudier F, et al. (2011) Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J 30(10):1928-1938.
    • (2011) EMBO J , vol.30 , Issue.10 , pp. 1928-1938
    • Roudier, F.1
  • 39
    • 33746450910 scopus 로고    scopus 로고
    • Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27
    • Shi J, Dawe RK (2006) Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27. Genetics 173(3):1571-1583.
    • (2006) Genetics , vol.173 , Issue.3 , pp. 1571-1583
    • Shi, J.1    Dawe, R.K.2
  • 40
    • 34347324121 scopus 로고    scopus 로고
    • Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
    • Turck F, et al. (2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet 3(6):e86.
    • (2007) PLoS Genet , vol.3 , Issue.6
    • Turck, F.1
  • 41
    • 46049093174 scopus 로고    scopus 로고
    • Structural basis for the recognition of histone H4 by the histone-chaperone RbAp46
    • Murzina NV, et al. (2008) Structural basis for the recognition of histone H4 by the histone-chaperone RbAp46. Structure 16(7):1077-1085.
    • (2008) Structure , vol.16 , Issue.7 , pp. 1077-1085
    • Murzina, N.V.1
  • 42
    • 44149123117 scopus 로고    scopus 로고
    • Structural basis of histone H4 recognition by p55
    • Song JJ, Garlick JD, Kingston RE (2008) Structural basis of histone H4 recognition by p55. Genes Dev 22(10):1313-1318.
    • (2008) Genes Dev , vol.22 , Issue.10 , pp. 1313-1318
    • Song, J.J.1    Garlick, J.D.2    Kingston, R.E.3
  • 43
    • 33744544276 scopus 로고    scopus 로고
    • Regulation of flowering time by Arabidopsis MSI1
    • Bouveret R, Schönrock N, Gruissem W, Hennig L (2006) Regulation of flowering time by Arabidopsis MSI1. Development 133(9):1693-1702.
    • (2006) Development , vol.133 , Issue.9 , pp. 1693-1702
    • Bouveret, R.1    Schönrock, N.2    Gruissem, W.3    Hennig, L.4
  • 44
    • 33646872978 scopus 로고    scopus 로고
    • Chromatin signatures of pluripotent cell lines
    • Azuara V, et al. (2006) Chromatin signatures of pluripotent cell lines. Nat Cell Biol 8(5):532-538.
    • (2006) Nat Cell Biol , vol.8 , Issue.5 , pp. 532-538
    • Azuara, V.1
  • 45
    • 3042781030 scopus 로고    scopus 로고
    • Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27
    • Kirmizis A, et al. (2004) Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev 18(13):1592-1605.
    • (2004) Genes Dev , vol.18 , Issue.13 , pp. 1592-1605
    • Kirmizis, A.1
  • 46
    • 79955586204 scopus 로고    scopus 로고
    • Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation
    • Lafos M, et al. (2011) Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation. PLoS Genet 7(4):e1002040.
    • (2011) PLoS Genet , vol.7 , Issue.4
    • Lafos, M.1
  • 47
    • 76749164914 scopus 로고    scopus 로고
    • Alternative epigenetic chromatin states of polycomb target genes
    • Schwartz YB, et al. (2010) Alternative epigenetic chromatin states of polycomb target genes. PLoS Genet 6(1):e1000805.
    • (2010) PLoS Genet , vol.6 , Issue.1
    • Schwartz, Y.B.1
  • 49
    • 0030885667 scopus 로고    scopus 로고
    • DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa
    • Rountree MR, Selker EU (1997) DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa. Genes Dev 11(18):2383-2395.
    • (1997) Genes Dev , vol.11 , Issue.18 , pp. 2383-2395
    • Rountree, M.R.1    Selker, E.U.2
  • 50
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan JE, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422(6934):859-868.
    • (2003) Nature , vol.422 , Issue.6934 , pp. 859-868
    • Galagan, J.E.1
  • 51
    • 80052661967 scopus 로고    scopus 로고
    • Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma
    • Ellison CE, et al. (2011) Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics 189(1):55-69.
    • (2011) Genetics , vol.189 , Issue.1 , pp. 55-69
    • Ellison, C.E.1
  • 52
    • 36549051577 scopus 로고    scopus 로고
    • Aligning multiple whole genomes with Mercator and MAVID
    • Dewey CN (2007) Aligning multiple whole genomes with Mercator and MAVID. Methods Mol Biol 395:221-236.
    • (2007) Methods Mol Biol , vol.395 , pp. 221-236
    • Dewey, C.N.1
  • 53
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ, Jr., Roos DS (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res 13(9):2178-2189.
    • (2003) Genome Res , vol.13 , Issue.9 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 54
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright AJ, Van Dongen S, Ouzounis CA (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30(7):1575-1584.
    • (2002) Nucleic Acids Res , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 55
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich JE, et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res 12(10):1611-1618.
    • (2002) Genome Res , vol.12 , Issue.10 , pp. 1611-1618
    • Stajich, J.E.1


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