Histone modifications associated with both A and B chromosomes of maize

Chromosome Research

Volumn 16, Issue 8, 2008, Pages 1203-1214

  Jin, Weiwei ^a,b   Lamb, Jonathan C ^c   Zhang, Wenli ^a   Kolano, Bozena ^a   Birchler, James A ^c   Jiang, Jiming ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c UNIVERSITY OF MISSOURI   (United States)

Author keywords

Acetylation; B chromosome; Centromere; Histone methylation; Maize; Zea maysi

Indexed keywords

HISTONE H3; HISTONE H4;

ARTICLE; AUTOSOME; CENTROMERE; CHEMICAL MODIFICATION; CHROMOSOME; CONTROLLED STUDY; EPIGENETICS; EUCHROMATIN; HETEROCHROMATIN; HISTONE MODIFICATION; MAIZE; NONHUMAN; PRIORITY JOURNAL; SUPERNUMERARY CHROMOSOME;

CHROMATIN; CHROMOSOMES, PLANT; DNA PRIMERS; EPIGENESIS, GENETIC; FLUORESCENT ANTIBODY TECHNIQUE; HISTONES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY; ZEA MAYS;

ANIMALIA; EUKARYOTA; ZEA; ZEA MAYS;

EID: 58149166748     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-008-1269-8     Document Type: Article

References (37)

1. LK Anderson A Lai SM Stack C Rizzon BS Gaut 2006 Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes Genome Res 16 115 122
2. MD Blower BA Sullivan GH Karpen 2002 Conserved organization of centromeric chromatin in flies and humans Dev Cell 2 319 330
3. HP Cam T Sugiyama ES Chen X Chen PC FitzGerald SIS Grewal 2005 Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome Nat Genet 37 809 819
4. M Carchilan M Delgado T Ribeiro 2007 Transcriptionally active heterochromatin in rye B chromosomes Plant Cell 19 1738 1749
5. ZK Cheng F Dong T Langdon 2002 Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon Plant Cell 14 1691 1704
6. AL Clayton CA Hazzalin LC Mahadevan 2006 Enhanced histone acetylation and transcription: a dynamic perspective Mol Cell 23 289 296
7. DW Cleveland YH Mao KF Sullivan 2003 Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling Cell 112 407 421
8. GM Euskirchen JS Rozowsky CL Wei 2007 Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies Genome Res 17 898 909
9. J Fuchs D Demidov A Houben I Schubert 2006 Chromosomal histone modification patterns-from conservation to diversity Trends Plant Sci 11 199 208
10. S Henikoff K Ahmad HS Malik 2001 The centromere paradox: stable inheritance with rapidly evolving DNA Science 293 1098 1102
11. A Houben ND Belyaev CR Leach JN Timmis 1997 Differences of histone H4 acetylation and replication timing between A and B chromosomes of Brachycome dichromosomatica Chromosome Res 5 233 237
12. A Houben D Demidov D Gernand A Meister CR Leach I Schubert 2003 Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content Plant J 33 967 973
13. JP Jackson L Johnson Z Jasencakova 2004 Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana Chromosoma 112 308 315
14. T Jenuwein CD Allis 2001 Translating the histone code Science 293 1074 1080
15. WW Jin JR Melo K Nagaki 2004 Maize centromeres: organization and functional adaptation in the genetic background of oat Plant Cell 16 571 581
16. WW Jin JC Lamb JM Vega RK Dawe JA Birchler J Jiang 2005 Molecular and functional dissection of the maize B centromere Plant Cell 17 1412 1423
17. JC Lamb A Kato JA Birchler 2005 Sequences associated with A chromosome centromeres are present throughout the maize B chromosome Chromosoma 113 337 349
18. JC Lamb JM Meyer B Corcoran A Kato FP Han JA Birchler 2007 Distinct chromosomal distributions of highly repetitive sequences in maize Chromosome Res 15 33 49
19. HR Lee WL Zhang T Langdon 2005 Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species Proc Natl Acad Sci USA 102 11793 11798
20. XY Li XF Wang K He 2008 High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression Plant Cell 20 259 276
21. AM Lindroth D Shultis Z Jasencakova 2004 Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3 EMBO J 23 4146 4155
22. Z Lippman AV Gendrel M Black 2004 Role of transposable elements in heterochromatin and epigenetic control Nature 430 471 476
23. K Luger AW Mader RK Richmond DF Sargent TJ Richmond 1997 Crystal structure of the nucleosome core particle at 2.8 angstrom resolution Nature 389 251 260
24. S Marschner K Kumke A Houben 2007 B chromosomes of B dichromosomatica show a reduced level of euchromatic histone H3 methylation marks Chromosome Res 15 215 222
25. C Martin Y Zhang 2005 The diverse functions of histone lysine methylation Nat Rev Mol Cell Biol 6 838 849
26. O Mathieu AV Probst J Paszkowski 2005 Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis EMBO J 24 2783 2791
27. K Nagaki ZK Cheng S Ouyang 2004 Sequencing of a rice centromere uncovers active genes Nat Genet 36 138 145
28. AJ Ruthenburg CD Allis J Wysocka 2007 Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark Mol Cell 25 15 30
29. J Shi RK Dawe 2006 Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27 Genetics 173 1571 1583
30. WJJ Soppe Z Jasencakova A Houben 2002 DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis EMBO J 21 6549 6559
31. BD Strahl CD Allis 2000 The language of covalent histone modifications Nature 403 41 45
32. BA Sullivan GH Karpen 2004 Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin Nat Struct Mol Biol 11 1076 1083
33. PB Talbert R Masuelli AP Tyagi L Comai S Henikoff 2002 Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant Plant Cell 14 1053 1066
34. T Wako M Fukuda R Furushima-Shimogawara ND Belyaev K Fukui 2002 Cell cycle-dependent and lysine residue-specific dynamic changes of histone H4 acetylation in barley Plant Mol Biol 49 645 653
35. HH Yan H Ito K Nobuta 2006 Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere Plant Cell 18 2123 2133
36. WL Zhang H-R Lee D-H Koo JM Jiang 2008 Epigenetic modification of centromeric chromatin: Hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize Plant Cell 20 25 34
37. CX Zhong JB Marshall C Topp 2002 Centromeric retroelements and satellites interact with maize kinetochore protein CENH3 Plant Cell 14 2825 2836