-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860–921. 11237011
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
2
-
-
80052012833
-
LINE-1 elements in structural variation and disease
-
Beck CR, Garcia-Perez JL, Badge RM, Moran JV, (2011) LINE-1 elements in structural variation and disease. Annu Rev Genomics Hum Genet 12: 187–215. doi: 10.1146/annurev-genom-082509-141802 21801021
-
(2011)
Annu Rev Genomics Hum Genet
, vol.12
, pp. 187-215
-
-
Beck, C.R.1
Garcia-Perez, J.L.2
Badge, R.M.3
Moran, J.V.4
-
3
-
-
0021474109
-
Defining the beginning and end of KpnI family segments
-
Grimaldi G, Skowronski J, Singer MF, (1984) Defining the beginning and end of KpnI family segments. Embo J 3: 1753–1759. 6090124
-
(1984)
Embo J
, vol.3
, pp. 1753-1759
-
-
Grimaldi, G.1
Skowronski, J.2
Singer, M.F.3
-
4
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, et al. (2003) Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A 100: 5280–5285. 12682288
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
-
5
-
-
0030903621
-
Many human L1 elements are capable of retrotransposition
-
Sassaman DM, Dombroski BA, Moran JV, Kimberland ML, Naas TP, et al. (1997) Many human L1 elements are capable of retrotransposition. Nat Genet 16: 37–43. 9140393
-
(1997)
Nat Genet
, vol.16
, pp. 37-43
-
-
Sassaman, D.M.1
Dombroski, B.A.2
Moran, J.V.3
Kimberland, M.L.4
Naas, T.P.5
-
6
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, et al. (2010) LINE-1 retrotransposition activity in human genomes. Cell 141: 1159–1170. doi: 10.1016/j.cell.2010.05.021 20602998
-
(2010)
Cell
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
Collier, P.2
Macfarlane, C.3
Malig, M.4
Kidd, J.M.5
-
7
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R, Batzer MA, (2009) The impact of retrotransposons on human genome evolution. Nat Rev Genet 10: 691–703. doi: 10.1038/nrg2640 19763152
-
(2009)
Nat Rev Genet
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
8
-
-
0023867459
-
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
-
Kazazian HH, Jr.Wong C, Youssoufian H, Scott AF, Phillips DG, et al. (1988) Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332: 164–166. 2831458
-
(1988)
Nature
, vol.332
, pp. 164-166
-
-
Kazazian, H.H.1
Wong, C.2
Youssoufian, H.3
Scott, A.F.4
Phillips, D.G.5
-
9
-
-
0028337602
-
A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion
-
Holmes SE, Dombroski BA, Krebs CM, Boehm CD, Kazazian HH, Jr. (1994) A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion. Nat Genet 7: 143–148. 7920631
-
(1994)
Nat Genet
, vol.7
, pp. 143-148
-
-
Holmes, S.E.1
Dombroski, B.A.2
Krebs, C.M.3
Boehm, C.D.4
Kazazian, H.H.5
-
10
-
-
0026503996
-
Disruption of the APC Gene by a Retrotransposal Insertion of L1 Sequence in a Colon Cancer
-
Miki Y, Nishisho I, Horii A, Miyoshi Y, Utsunomiya J, et al. (1992) Disruption of the APC Gene by a Retrotransposal Insertion of L1 Sequence in a Colon Cancer. Cancer Research 52: 643–645. 1310068
-
(1992)
Cancer Research
, vol.52
, pp. 643-645
-
-
Miki, Y.1
Nishisho, I.2
Horii, A.3
Miyoshi, Y.4
Utsunomiya, J.5
-
11
-
-
84875698271
-
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma
-
Shukla R, Upton KR, Munoz-Lopez M, Gerhardt DJ, Fisher ME, et al. (2013) Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma. Cell 153: 101–111. doi: 10.1016/j.cell.2013.02.032 23540693
-
(2013)
Cell
, vol.153
, pp. 101-111
-
-
Shukla, R.1
Upton, K.R.2
Munoz-Lopez, M.3
Gerhardt, D.J.4
Fisher, M.E.5
-
12
-
-
84862507347
-
Active human retrotransposons: variation and disease
-
Hancks DC, Kazazian HH, Jr. (2012) Active human retrotransposons: variation and disease. Curr Opin Genet Dev 22: 191–203. doi: 10.1016/j.gde.2012.02.006 22406018
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 191-203
-
-
Hancks, D.C.1
Kazazian, H.H.2
-
13
-
-
0025223152
-
Identification, characterization, and cell specificity of a human LINE-1 promoter
-
Swergold GD, (1990) Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol Cell Biol 10: 6718–6729. 1701022
-
(1990)
Mol Cell Biol
, vol.10
, pp. 6718-6729
-
-
Swergold, G.D.1
-
14
-
-
3242706180
-
A YY1-binding site is required for accurate human LINE-1 transcription initiation
-
Athanikar JN, Badge RM, Moran JV, (2004) A YY1-binding site is required for accurate human LINE-1 transcription initiation. Nucleic Acids Res 32: 3846–3855. 15272086
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3846-3855
-
-
Athanikar, J.N.1
Badge, R.M.2
Moran, J.V.3
-
15
-
-
0027500890
-
Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element
-
Becker KG, Swergold GD, Ozato K, Thayer RE, (1993) Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element. Hum Mol Genet 2: 1697–1702. 8268924
-
(1993)
Hum Mol Genet
, vol.2
, pp. 1697-1702
-
-
Becker, K.G.1
Swergold, G.D.2
Ozato, K.3
Thayer, R.E.4
-
16
-
-
0023429458
-
Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence
-
Scott AF, Schmeckpeper BJ, Abdelrazik M, Comey CT, O'Hara B, et al. (1987) Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence. Genomics 1: 113–125. 3692483
-
(1987)
Genomics
, vol.1
, pp. 113-125
-
-
Scott, A.F.1
Schmeckpeper, B.J.2
Abdelrazik, M.3
Comey, C.T.4
O'Hara, B.5
-
17
-
-
0026331048
-
Isolation of an active human transposable element
-
Dombroski BA, Mathias SL, Nanthakumar E, Scott AF, Kazazian HH, Jr. (1991) Isolation of an active human transposable element. Science 254: 1805–1808. 1662412
-
(1991)
Science
, vol.254
, pp. 1805-1808
-
-
Dombroski, B.A.1
Mathias, S.L.2
Nanthakumar, E.3
Scott, A.F.4
Kazazian, H.H.5
-
18
-
-
0025740894
-
Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells
-
Martin SL, (1991) Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells. Mol Cell Biol 11: 4804–4807. 1715025
-
(1991)
Mol Cell Biol
, vol.11
, pp. 4804-4807
-
-
Martin, S.L.1
-
19
-
-
0030042251
-
Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
-
Hohjoh H, Singer MF, (1996) Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. Embo J 15: 630–639. 8599946
-
(1996)
Embo J
, vol.15
, pp. 630-639
-
-
Hohjoh, H.1
Singer, M.F.2
-
20
-
-
0030870342
-
Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon
-
Hohjoh H, Singer MF, (1997) Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon. Embo J 16: 6034–6043. 9312060
-
(1997)
Embo J
, vol.16
, pp. 6034-6043
-
-
Hohjoh, H.1
Singer, M.F.2
-
21
-
-
0026699895
-
Studies on p40, the leucine zipper motif-containing protein encoded by the first open reading frame of an active human LINE-1 transposable element
-
Holmes SE, Singer MF, Swergold GD, (1992) Studies on p40, the leucine zipper motif-containing protein encoded by the first open reading frame of an active human LINE-1 transposable element. J Biol Chem 267: 19765–19768. 1328181
-
(1992)
J Biol Chem
, vol.267
, pp. 19765-19768
-
-
Holmes, S.E.1
Singer, M.F.2
Swergold, G.D.3
-
22
-
-
58849089283
-
Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame
-
Khazina E, Weichenrieder O, (2009) Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame. Proceedings of the National Academy of Sciences 106: 731–736. doi: 10.1073/pnas.0809964106 19139409
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 731-736
-
-
Khazina, E.1
Weichenrieder, O.2
-
23
-
-
0035163939
-
Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
-
Martin SL, Bushman FD, (2001) Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol Cell Biol 21: 467–475. 11134335
-
(2001)
Mol Cell Biol
, vol.21
, pp. 467-475
-
-
Martin, S.L.1
Bushman, F.D.2
-
24
-
-
3042589222
-
Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues
-
Ergun S, Buschmann C, Heukeshoven J, Dammann K, Schnieders F, et al. (2004) Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues. J Biol Chem 279: 27753–27763. 15056671
-
(2004)
J Biol Chem
, vol.279
, pp. 27753-27763
-
-
Ergun, S.1
Buschmann, C.2
Heukeshoven, J.3
Dammann, K.4
Schnieders, F.5
-
25
-
-
77952538520
-
Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion
-
Goodier JL, Mandal PK, Zhang L, Kazazian HH, Jr. (2010) Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion. Hum Mol Genet 19: 1712–1725. doi: 10.1093/hmg/ddq048 20147320
-
(2010)
Hum Mol Genet
, vol.19
, pp. 1712-1725
-
-
Goodier, J.L.1
Mandal, P.K.2
Zhang, L.3
Kazazian, H.H.4
-
26
-
-
78449236016
-
Characterization of LINE-1 ribonucleoprotein particles
-
Doucet AJ, Hulme AE, Sahinovic E, Kulpa DA, Moldovan JB, et al. (2010) Characterization of LINE-1 ribonucleoprotein particles. PLoS Genet 6: pii: e1001150. doi: 10.1371/journal.ppat.1001150 20976200
-
(2010)
PLoS Genet 6
, pp. e1001150
-
-
Doucet, A.J.1
Hulme, A.E.2
Sahinovic, E.3
Kulpa, D.A.4
Moldovan, J.B.5
-
27
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q, Moran JV, Kazazian HH, Jr.Boeke JD, (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87: 905–916. 8945517
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian, H.H.3
Boeke, J.D.4
-
28
-
-
0028237075
-
An in vivo assay for the reverse transcriptase of human retrotransposon L1 in Saccharomyces cerevisiae
-
Dombroski BA, Feng Q, Mathias SL, Sassaman DM, Scott AF, et al. (1994) An in vivo assay for the reverse transcriptase of human retrotransposon L1 in Saccharomyces cerevisiae. Mol Cell Biol 14: 4485–4492. 7516468
-
(1994)
Mol Cell Biol
, vol.14
, pp. 4485-4492
-
-
Dombroski, B.A.1
Feng, Q.2
Mathias, S.L.3
Sassaman, D.M.4
Scott, A.F.5
-
29
-
-
0026428975
-
Reverse transcriptase encoded by a human transposable element
-
Mathias SL, Scott AF, Kazazian HH, Jr.Boeke JD, Gabriel A, (1991) Reverse transcriptase encoded by a human transposable element. Science 254: 1808–1810. 1722352
-
(1991)
Science
, vol.254
, pp. 1808-1810
-
-
Mathias, S.L.1
Scott, A.F.2
Kazazian, H.H.3
Boeke, J.D.4
Gabriel, A.5
-
30
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran JV, Holmes SE, Naas TP, DeBerardinis RJ, Boeke JD, et al. (1996) High frequency retrotransposition in cultured mammalian cells. Cell 87: 917–927. 8945518
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
-
31
-
-
0025026986
-
Translation of LINE-1 DNA elements in vitro and in human cells
-
Leibold DM, Swergold GD, Singer MF, Thayer RE, Dombroski BA, et al. (1990) Translation of LINE-1 DNA elements in vitro and in human cells. Proc Natl Acad Sci U S A 87: 6990–6994. 1698287
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 6990-6994
-
-
Leibold, D.M.1
Swergold, G.D.2
Singer, M.F.3
Thayer, R.E.4
Dombroski, B.A.5
-
32
-
-
0027144076
-
Translation of the human LINE-1 element, L1Hs
-
McMillan JP, Singer MF, (1993) Translation of the human LINE-1 element, L1Hs. Proc Natl Acad Sci U S A 90: 11533–11537. 8265584
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 11533-11537
-
-
McMillan, J.P.1
Singer, M.F.2
-
33
-
-
30944454495
-
Unconventional translation of mammalian LINE-1 retrotransposons
-
Alisch RS, Garcia-Perez JL, Muotri AR, Gage FH, Moran JV, (2006) Unconventional translation of mammalian LINE-1 retrotransposons. Genes Dev 20: 210–224. 16418485
-
(2006)
Genes Dev
, vol.20
, pp. 210-224
-
-
Alisch, R.S.1
Garcia-Perez, J.L.2
Muotri, A.R.3
Gage, F.H.4
Moran, J.V.5
-
34
-
-
34347326163
-
Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 5' untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated
-
Dmitriev SE, Andreev DE, Terenin IM, Olovnikov IA, Prassolov VS, et al. (2007) Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 5' untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated. Mol Cell Biol 27: 4685–4697. 17470553
-
(2007)
Mol Cell Biol
, vol.27
, pp. 4685-4697
-
-
Dmitriev, S.E.1
Andreev, D.E.2
Terenin, I.M.3
Olovnikov, I.A.4
Prassolov, V.S.5
-
35
-
-
0035144498
-
Human L1 retrotransposition: cis preference versus trans complementation
-
Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, et al. (2001) Human L1 retrotransposition: cis preference versus trans complementation. Mol Cell Biol 21: 1429–1439. 11158327
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
-
36
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault C, Maestre J, Heidmann T, (2000) Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24: 363–367. 10742098
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
37
-
-
27744486591
-
Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition
-
Kulpa DA, Moran JV, (2005) Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition. Hum Mol Genet 14: 3237–3248. 16183655
-
(2005)
Hum Mol Genet
, vol.14
, pp. 3237-3248
-
-
Kulpa, D.A.1
Moran, J.V.2
-
38
-
-
33745864020
-
Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles
-
Kulpa DA, Moran JV, (2006) Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles. Nat Struct Mol Biol 13: 655–660. 16783376
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 655-660
-
-
Kulpa, D.A.1
Moran, J.V.2
-
39
-
-
33744466012
-
L1 retrotransposition in nondividing and primary human somatic cells
-
Kubo S, Seleme Mdel C, Soifer HS, Perez JL, Moran JV, et al. (2006) L1 retrotransposition in nondividing and primary human somatic cells. Proc Natl Acad Sci U S A 103: 8036–8041. 16698926
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 8036-8041
-
-
Kubo, S.1
Seleme Mdel, C.2
Soifer, H.S.3
Perez, J.L.4
Moran, J.V.5
-
40
-
-
33846938255
-
Cell divisions are required for L1 retrotransposition
-
Shi X, Seluanov A, Gorbunova V, (2007) Cell divisions are required for L1 retrotransposition. Mol Cell Biol 27: 1264–1270. 17145770
-
(2007)
Mol Cell Biol
, vol.27
, pp. 1264-1270
-
-
Shi, X.1
Seluanov, A.2
Gorbunova, V.3
-
41
-
-
84875547542
-
Cell division promotes efficient retrotransposition in a stable L1 reporter cell line
-
Xie Y, Mates L, Ivics Z, Izsvak Z, Martin SL, et al. (2013) Cell division promotes efficient retrotransposition in a stable L1 reporter cell line. Mob DNA 4: 10. doi: 10.1186/1759-8753-4-10 23497436
-
(2013)
Mob DNA
, vol.4
, pp. 10
-
-
Xie, Y.1
Mates, L.2
Ivics, Z.3
Izsvak, Z.4
Martin, S.L.5
-
42
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH, (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72: 595–605. 7679954
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
43
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost GJ, Feng Q, Jacquier A, Boeke JD, (2002) Human L1 element target-primed reverse transcription in vitro. Embo J 21: 5899–5910. 12411507
-
(2002)
Embo J
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
44
-
-
0032559061
-
Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
-
Cost GJ, Boeke JD, (1998) Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37: 18081–18093. 9922177
-
(1998)
Biochemistry
, vol.37
, pp. 18081-18093
-
-
Cost, G.J.1
Boeke, J.D.2
-
45
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish TA, Gilbert N, Myers JS, Vincent BJ, Stamato TD, et al. (2002) DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat Genet 31: 159–165. 12006980
-
(2002)
Nat Genet
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
Gilbert, N.2
Myers, J.S.3
Vincent, B.J.4
Stamato, T.D.5
-
46
-
-
65649135139
-
Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition
-
Suzuki J, Yamaguchi K, Kajikawa M, Ichiyanagi K, Adachi N, et al. (2009) Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition. PLoS Genet 5: e1000461. doi: 10.1371/journal.pgen.1000461 19390601
-
(2009)
PLoS Genet
, vol.5
, pp. e1000461
-
-
Suzuki, J.1
Yamaguchi, K.2
Kajikawa, M.3
Ichiyanagi, K.4
Adachi, N.5
-
47
-
-
84889600606
-
Affinity Proteomics Reveals Human Host Factors Implicated in Discrete Stages of LINE-1 Retrotransposition
-
Taylor MS, Lacava J, Mita P, Molloy KR, Huang CR, et al. (2013) Affinity Proteomics Reveals Human Host Factors Implicated in Discrete Stages of LINE-1 Retrotransposition. Cell 155: 1034–1048. doi: 10.1016/j.cell.2013.10.021 24267889
-
(2013)
Cell
, vol.155
, pp. 1034-1048
-
-
Taylor, M.S.1
Lacava, J.2
Mita, P.3
Molloy, K.R.4
Huang, C.R.5
-
48
-
-
23844510228
-
Multiple fates of l1 retrotransposition intermediates in cultured human cells
-
Gilbert N, Lutz S, Morrish TA, Moran JV, (2005) Multiple fates of l1 retrotransposition intermediates in cultured human cells. Mol Cell Biol 25: 7780–7795. 16107723
-
(2005)
Mol Cell Biol
, vol.25
, pp. 7780-7795
-
-
Gilbert, N.1
Lutz, S.2
Morrish, T.A.3
Moran, J.V.4
-
49
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M, Esnault C, Heidmann T, (2003) LINE-mediated retrotransposition of marked Alu sequences. Nat Genet 35: 41–48. 12897783
-
(2003)
Nat Genet
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
50
-
-
0345636604
-
SVA elements are nonautonomous retrotransposons that cause disease in humans
-
Ostertag EM, Goodier JL, Zhang Y, Kazazian HH, Jr. (2003) SVA elements are nonautonomous retrotransposons that cause disease in humans. Am J Hum Genet 73: 1444–1451. 14628287
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1444-1451
-
-
Ostertag, E.M.1
Goodier, J.L.2
Zhang, Y.3
Kazazian, H.H.4
-
51
-
-
80051702066
-
Retrotransposition of marked SVA elements by human L1s in cultured cells
-
Hancks DC, Goodier JL, Mandal PK, Cheung LE, Kazazian HH, Jr. (2011) Retrotransposition of marked SVA elements by human L1s in cultured cells. Hum Mol Genet 20: 3386–3400. doi: 10.1093/hmg/ddr245 21636526
-
(2011)
Hum Mol Genet
, vol.20
, pp. 3386-3400
-
-
Hancks, D.C.1
Goodier, J.L.2
Mandal, P.K.3
Cheung, L.E.4
Kazazian, H.H.5
-
52
-
-
84857888415
-
The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery
-
Raiz J, Damert A, Chira S, Held U, Klawitter S, et al. (2012) The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery. Nucleic Acids Res 40: 1666–1683. doi: 10.1093/nar/gkr863 22053090
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1666-1683
-
-
Raiz, J.1
Damert, A.2
Chira, S.3
Held, U.4
Klawitter, S.5
-
53
-
-
0036417244
-
A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of l1
-
Buzdin A, Ustyugova S, Gogvadze E, Vinogradova T, Lebedev Y, et al. (2002) A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of l1. Genomics 80: 402–406. 12376094
-
(2002)
Genomics
, vol.80
, pp. 402-406
-
-
Buzdin, A.1
Ustyugova, S.2
Gogvadze, E.3
Vinogradova, T.4
Lebedev, Y.5
-
54
-
-
34248141710
-
Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase
-
Garcia-Perez JL, Doucet AJ, Bucheton A, Moran JV, Gilbert N, (2007) Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase. Genome Res 17: 602–611. 17416749
-
(2007)
Genome Res
, vol.17
, pp. 602-611
-
-
Garcia-Perez, J.L.1
Doucet, A.J.2
Bucheton, A.3
Moran, J.V.4
Gilbert, N.5
-
55
-
-
33846012547
-
Mammalian Small Nucleolar RNAs Are Mobile Genetic Elements
-
Weber MJ, (2006) Mammalian Small Nucleolar RNAs Are Mobile Genetic Elements. PLoS Genet 2: e205. 17154719
-
(2006)
PLoS Genet
, vol.2
, pp. e205
-
-
Weber, M.J.1
-
56
-
-
80051997952
-
Dynamic interactions between transposable elements and their hosts
-
Levin HL, Moran JV, (2011) Dynamic interactions between transposable elements and their hosts. Nature reviews Genetics 12: 615–627. doi: 10.1038/nrg3030 21850042
-
(2011)
Nature reviews Genetics
, vol.12
, pp. 615-627
-
-
Levin, H.L.1
Moran, J.V.2
-
57
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder JA, Walsh CP, Bestor TH, (1997) Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13: 335–340. 9260521
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
58
-
-
4544223707
-
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
-
Bourc'his D, Bestor TH, (2004) Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431: 96–99. 15318244
-
(2004)
Nature
, vol.431
, pp. 96-99
-
-
Bourc'his, D.1
Bestor, T.H.2
-
59
-
-
79953089167
-
PIWI-interacting small RNAs: the vanguard of genome defence
-
Siomi MC, Sato K, Pezic D, Aravin AA, (2011) PIWI-interacting small RNAs: the vanguard of genome defence. Nat Rev Mol Cell Biol 12: 246–258. doi: 10.1038/nrm3089 21427766
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 246-258
-
-
Siomi, M.C.1
Sato, K.2
Pezic, D.3
Aravin, A.A.4
-
60
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ, (2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744–747. 17446352
-
(2007)
Science
, vol.316
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
61
-
-
84899637671
-
APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition
-
Richardson SR, Narvaiza I, Planegger RA, Weitzman MD, Moran JV, (2014) APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition. Elife 3: e02008. doi: 10.7554/eLife.02008 24843014
-
(2014)
Elife
, vol.3
, pp. e02008
-
-
Richardson, S.R.1
Narvaiza, I.2
Planegger, R.A.3
Weitzman, M.D.4
Moran, J.V.5
-
62
-
-
34250870205
-
APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition
-
Schumann GG, (2007) APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition. Biochem Soc Trans 35: 637–642. 17511669
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 637-642
-
-
Schumann, G.G.1
-
63
-
-
49549100511
-
Trex1 prevents cell-intrinsic initiation of autoimmunity
-
Stetson DB, Ko JS, Heidmann T, Medzhitov R, (2008) Trex1 prevents cell-intrinsic initiation of autoimmunity. Cell 134: 587–598. doi: 10.1016/j.cell.2008.06.032 18724932
-
(2008)
Cell
, vol.134
, pp. 587-598
-
-
Stetson, D.B.1
Ko, J.S.2
Heidmann, T.3
Medzhitov, R.4
-
64
-
-
84862568417
-
Endogenous MOV10 inhibits the retrotransposition of endogenous retroelements but not the replication of exogenous retroviruses
-
Arjan-Odedra S, Swanson CM, Sherer NM, Wolinsky SM, Malim MH, (2012) Endogenous MOV10 inhibits the retrotransposition of endogenous retroelements but not the replication of exogenous retroviruses. Retrovirology 9: 53. doi: 10.1186/1742-4690-9-53 22727223
-
(2012)
Retrovirology
, vol.9
, pp. 53
-
-
Arjan-Odedra, S.1
Swanson, C.M.2
Sherer, N.M.3
Wolinsky, S.M.4
Malim, M.H.5
-
65
-
-
84868099592
-
MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells
-
Goodier JL, Cheung LE, Kazazian HH, Jr. (2012) MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells. PLoS Genet 8: e1002941. doi: 10.1371/journal.pgen.1002941 23093941
-
(2012)
PLoS Genet
, vol.8
, pp. e1002941
-
-
Goodier, J.L.1
Cheung, L.E.2
Kazazian, H.H.3
-
66
-
-
84880556107
-
The MOV10 helicase inhibits LINE-1 mobility
-
Li X, Zhang J, Jia R, Cheng V, Xu X, et al. (2013) The MOV10 helicase inhibits LINE-1 mobility. J Biol Chem 288: 21148–21160. doi: 10.1074/jbc.M113.465856 23754279
-
(2013)
J Biol Chem
, vol.288
, pp. 21148-21160
-
-
Li, X.1
Zhang, J.2
Jia, R.3
Cheng, V.4
Xu, X.5
-
67
-
-
84871740038
-
hnRNPL and nucleolin bind LINE-1 RNA and function as host factors to modulate retrotransposition
-
Peddigari S, Li PW- L, Rabe JL, Martin SL, (2013) hnRNPL and nucleolin bind LINE-1 RNA and function as host factors to modulate retrotransposition. Nucleic Acids Research 41: 575–585. doi: 10.1093/nar/gks1075 23161687
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 575-585
-
-
Peddigari, S.1
Li PW-, L.2
Rabe, J.L.3
Martin, S.L.4
-
68
-
-
84884590112
-
Modulation of LINE-1 and Alu/SVA retrotransposition by Aicardi-Goutieres syndrome-related SAMHD1
-
Zhao K, Du J, Han X, Goodier JL, Li P, et al. (2013) Modulation of LINE-1 and Alu/SVA retrotransposition by Aicardi-Goutieres syndrome-related SAMHD1. Cell Rep 4: 1108–1115. doi: 10.1016/j.celrep.2013.08.019 24035396
-
(2013)
Cell Rep
, vol.4
, pp. 1108-1115
-
-
Zhao, K.1
Du, J.2
Han, X.3
Goodier, J.L.4
Li, P.5
-
69
-
-
84899019020
-
RNase L restricts the mobility of engineered retrotransposons in cultured human cells
-
Zhang A, Dong B, Doucet AJ, Moldovan JB, Moran JV, et al. (2014) RNase L restricts the mobility of engineered retrotransposons in cultured human cells. Nucleic Acids Res 42: 3803–3820. doi: 10.1093/nar/gkt1308 24371271
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 3803-3820
-
-
Zhang, A.1
Dong, B.2
Doucet, A.J.3
Moldovan, J.B.4
Moran, J.V.5
-
70
-
-
84903979440
-
Regulation of L1 expression and retrotransposition by melatonin and its receptor: implications for cancer risk associated with light exposure at night
-
deHaro D, Kines KJ, Sokolowski M, Dauchy RT, Streva VA, et al. (2014) Regulation of L1 expression and retrotransposition by melatonin and its receptor: implications for cancer risk associated with light exposure at night. Nucleic Acids Research 42: 7694–7707. doi: 10.1093/nar/gku503 24914052
-
(2014)
Nucleic Acids Research
, vol.42
, pp. 7694-7707
-
-
deHaro, D.1
Kines, K.J.2
Sokolowski, M.3
Dauchy, R.T.4
Streva, V.A.5
-
71
-
-
0034633295
-
A transient assay reveals that cultured human cells can accommodate multiple LINE-1 retrotransposition events
-
Wei W, Morrish TA, Alisch RS, Moran JV, (2000) A transient assay reveals that cultured human cells can accommodate multiple LINE-1 retrotransposition events. Anal Biochem 284: 435–438. 10964437
-
(2000)
Anal Biochem
, vol.284
, pp. 435-438
-
-
Wei, W.1
Morrish, T.A.2
Alisch, R.S.3
Moran, J.V.4
-
72
-
-
0037031709
-
Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein
-
Gao G, Guo X, Goff SP, (2002) Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein. Science 297: 1703–1706. 12215647
-
(2002)
Science
, vol.297
, pp. 1703-1706
-
-
Gao, G.1
Guo, X.2
Goff, S.P.3
-
73
-
-
77956829730
-
P body-associated protein Mov10 inhibits HIV-1 replication at multiple stages
-
Burdick R, Smith JL, Chaipan C, Friew Y, Chen J, et al. (2010) P body-associated protein Mov10 inhibits HIV-1 replication at multiple stages. J Virol 84: 10241–10253. doi: 10.1128/JVI.00585-10 20668078
-
(2010)
J Virol
, vol.84
, pp. 10241-10253
-
-
Burdick, R.1
Smith, J.L.2
Chaipan, C.3
Friew, Y.4
Chen, J.5
-
74
-
-
0025786141
-
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
-
Leeds P, Peltz SW, Jacobson A, Culbertson MR, (1991) The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev 5: 2303–2314. 1748286
-
(1991)
Genes Dev
, vol.5
, pp. 2303-2314
-
-
Leeds, P.1
Peltz, S.W.2
Jacobson, A.3
Culbertson, M.R.4
-
75
-
-
0037217365
-
HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats
-
Hui J, Stangl K, Lane WS, Bindereif A, (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat Struct Biol 10: 33–37. 12447348
-
(2003)
Nat Struct Biol
, vol.10
, pp. 33-37
-
-
Hui, J.1
Stangl, K.2
Lane, W.S.3
Bindereif, A.4
-
76
-
-
0025925276
-
napts, a mutation affecting sodium channel activity in Drosophila, is an allele of mle, a regulator of X chromosome transcription
-
Kernan MJ, Kuroda MI, Kreber R, Baker BS, Ganetzky B, (1991) napts, a mutation affecting sodium channel activity in Drosophila, is an allele of mle, a regulator of X chromosome transcription. Cell 66: 949–959. 1653649
-
(1991)
Cell
, vol.66
, pp. 949-959
-
-
Kernan, M.J.1
Kuroda, M.I.2
Kreber, R.3
Baker, B.S.4
Ganetzky, B.5
-
77
-
-
0025944523
-
The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila
-
Kuroda MI, Kernan MJ, Kreber R, Ganetzky B, Baker BS, (1991) The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila. Cell 66: 935–947. 1653648
-
(1991)
Cell
, vol.66
, pp. 935-947
-
-
Kuroda, M.I.1
Kernan, M.J.2
Kreber, R.3
Ganetzky, B.4
Baker, B.S.5
-
78
-
-
0026453350
-
Sequence of cDNA comprising the human pur gene and sequence-specific single-stranded-DNA-binding properties of the encoded protein
-
Bergemann AD, Ma ZW, Johnson EM, (1992) Sequence of cDNA comprising the human pur gene and sequence-specific single-stranded-DNA-binding properties of the encoded protein. Mol Cell Biol 12: 5673–5682. 1448097
-
(1992)
Mol Cell Biol
, vol.12
, pp. 5673-5682
-
-
Bergemann, A.D.1
Ma, Z.W.2
Johnson, E.M.3
-
79
-
-
0028216325
-
PITALRE, a nuclear CDC2-related protein kinase that phosphorylates the retinoblastoma protein in vitro
-
Grana X, De Luca A, Sang N, Fu Y, Claudio PP, et al. (1994) PITALRE, a nuclear CDC2-related protein kinase that phosphorylates the retinoblastoma protein in vitro. Proc Natl Acad Sci U S A 91: 3834–3838. 8170997
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 3834-3838
-
-
Grana, X.1
De Luca, A.2
Sang, N.3
Fu, Y.4
Claudio, P.P.5
-
80
-
-
0028088479
-
Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor of activated T-cells: NF45 and NF90
-
Kao PN, Chen L, Brock G, Ng J, Kenny J, et al. (1994) Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor of activated T-cells: NF45 and NF90. J Biol Chem 269: 20691–20699. 7519613
-
(1994)
J Biol Chem
, vol.269
, pp. 20691-20699
-
-
Kao, P.N.1
Chen, L.2
Brock, G.3
Ng, J.4
Kenny, J.5
-
81
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25–29. 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
82
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149: 1393–1406. doi: 10.1016/j.cell.2012.04.031 22658674
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
-
83
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y, et al. (2012) The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol Cell 46: 674–690. doi: 10.1016/j.molcel.2012.05.021 22681889
-
(2012)
Mol Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhausser, B.3
Vasile, A.4
Murakawa, Y.5
-
84
-
-
84883018856
-
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles
-
Mandal PK, Ewing AD, Hancks DC, Kazazian HH, Jr. (2013) Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles. Hum Mol Genet 22: 3730–3748. doi: 10.1093/hmg/ddt225 23696454
-
(2013)
Hum Mol Genet
, vol.22
, pp. 3730-3748
-
-
Mandal, P.K.1
Ewing, A.D.2
Hancks, D.C.3
Kazazian, H.H.4
-
85
-
-
84855490007
-
Similarities between long interspersed element-1 (LINE-1) reverse transcriptase and telomerase
-
Kopera HC, Moldovan JB, Morrish TA, Garcia-Perez JL, Moran JV, (2011) Similarities between long interspersed element-1 (LINE-1) reverse transcriptase and telomerase. Proc Natl Acad Sci U S A.
-
(2011)
Proc Natl Acad Sci U S A
-
-
Kopera, H.C.1
Moldovan, J.B.2
Morrish, T.A.3
Garcia-Perez, J.L.4
Moran, J.V.5
-
86
-
-
33746792780
-
APOBEC3 proteins inhibit human LINE-1 retrotransposition
-
Muckenfuss H, Hamdorf M, Held U, Perkovic M, Lower J, et al. (2006) APOBEC3 proteins inhibit human LINE-1 retrotransposition. J Biol Chem 281: 22161–22172. 16735504
-
(2006)
J Biol Chem
, vol.281
, pp. 22161-22172
-
-
Muckenfuss, H.1
Hamdorf, M.2
Held, U.3
Perkovic, M.4
Lower, J.5
-
87
-
-
33745044396
-
Cellular inhibitors of long interspersed element 1 and Alu retrotransposition
-
Bogerd HP, Wiegand HL, Hulme AE, Garcia-Perez JL, O'Shea KS, et al. (2006) Cellular inhibitors of long interspersed element 1 and Alu retrotransposition. Proc Natl Acad Sci U S A 103: 8780–8785. 16728505
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 8780-8785
-
-
Bogerd, H.P.1
Wiegand, H.L.2
Hulme, A.E.3
Garcia-Perez, J.L.4
O'Shea, K.S.5
-
88
-
-
33644769083
-
APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons
-
Chen H, Lilley CE, Yu Q, Lee DV, Chou J, et al. (2006) APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons. Curr Biol 16: 480–485. 16527742
-
(2006)
Curr Biol
, vol.16
, pp. 480-485
-
-
Chen, H.1
Lilley, C.E.2
Yu, Q.3
Lee, D.V.4
Chou, J.5
-
89
-
-
84883589001
-
Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition
-
Goodier JL, Cheung LE, Kazazian HH, Jr. (2013) Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition. Nucleic Acids Res 41: 7401–19. doi: 10.1093/nar/gkt512 23749060
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7401-7419
-
-
Goodier, J.L.1
Cheung, L.E.2
Kazazian, H.H.3
-
90
-
-
38949096858
-
Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein
-
Kerns JA, Emerman M, Malik HS, (2008) Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein. PLoS Genet 4: e21. doi: 10.1371/journal.pgen.0040021 18225958
-
(2008)
PLoS Genet
, vol.4
, pp. e21
-
-
Kerns, J.A.1
Emerman, M.2
Malik, H.S.3
-
91
-
-
84861305735
-
Structure of N-terminal domain of ZAP indicates how a zinc-finger protein recognizes complex RNA
-
Chen S, Xu Y, Zhang K, Wang X, Sun J, et al. (2012) Structure of N-terminal domain of ZAP indicates how a zinc-finger protein recognizes complex RNA. Nat Struct Mol Biol 19: 430–435. doi: 10.1038/nsmb.2243 22407013
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 430-435
-
-
Chen, S.1
Xu, Y.2
Zhang, K.3
Wang, X.4
Sun, J.5
-
92
-
-
8644267555
-
The Zinc Finger Antiviral Protein Directly Binds to Specific Viral mRNAs through the CCCH Zinc Finger Motifs
-
Guo X, Carroll J- WN, MacDonald MR, Goff SP, Gao G, (2004) The Zinc Finger Antiviral Protein Directly Binds to Specific Viral mRNAs through the CCCH Zinc Finger Motifs. Journal of Virology 78: 12781–12787. 15542630
-
(2004)
Journal of Virology
, vol.78
, pp. 12781-12787
-
-
Guo, X.1
Carroll J-, W.N.2
MacDonald, M.R.3
Goff, S.P.4
Gao, G.5
-
93
-
-
0021127698
-
Alu sequences are processed 7SL RNA genes
-
Ullu E, Tschudi C, (1984) Alu sequences are processed 7SL RNA genes. Nature 312: 171–172. 6209580
-
(1984)
Nature
, vol.312
, pp. 171-172
-
-
Ullu, E.1
Tschudi, C.2
-
94
-
-
0034760666
-
A novel active L1 retrotransposon subfamily in the mouse
-
Goodier JL, Ostertag EM, Du K, Kazazian HH, Jr. (2001) A novel active L1 retrotransposon subfamily in the mouse. Genome Res 11: 1677–1685. 11591644
-
(2001)
Genome Res
, vol.11
, pp. 1677-1685
-
-
Goodier, J.L.1
Ostertag, E.M.2
Du, K.3
Kazazian, H.H.4
-
95
-
-
31844442956
-
Isolation and characterization of retrotransposition-competent LINEs from zebrafish
-
Sugano T, Kajikawa M, Okada N, (2006) Isolation and characterization of retrotransposition-competent LINEs from zebrafish. Gene 365: 74–82. 16356661
-
(2006)
Gene
, vol.365
, pp. 74-82
-
-
Sugano, T.1
Kajikawa, M.2
Okada, N.3
-
96
-
-
2442671716
-
A highly active synthetic mammalian retrotransposon
-
Han JS, Boeke JD, (2004) A highly active synthetic mammalian retrotransposon. Nature 429: 314–318. 15152256
-
(2004)
Nature
, vol.429
, pp. 314-318
-
-
Han, J.S.1
Boeke, J.D.2
-
97
-
-
0034653773
-
Determination of L1 retrotransposition kinetics in cultured cells
-
Ostertag EM, Prak ET, DeBerardinis RJ, Moran JV, Kazazian HH, Jr. (2000) Determination of L1 retrotransposition kinetics in cultured cells. Nucleic Acids Res 28: 1418–1423. 10684937
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1418-1423
-
-
Ostertag, E.M.1
Prak, E.T.2
DeBerardinis, R.J.3
Moran, J.V.4
Kazazian, H.H.5
-
98
-
-
17144423310
-
LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein
-
Martin SL, Cruceanu M, Branciforte D, Wai-Lun Li P, Kwok SC, et al. (2005) LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein. J Mol Biol 348: 549–561. 15826653
-
(2005)
J Mol Biol
, vol.348
, pp. 549-561
-
-
Martin, S.L.1
Cruceanu, M.2
Branciforte, D.3
Wai-Lun Li, P.4
Kwok, S.C.5
-
99
-
-
39749182717
-
The impact of multiple splice sites in human L1 elements
-
Belancio VP, Roy-Engel AM, Deininger P, (2008) The impact of multiple splice sites in human L1 elements. Gene 411: 38–45. doi: 10.1016/j.gene.2007.12.022 18261861
-
(2008)
Gene
, vol.411
, pp. 38-45
-
-
Belancio, V.P.1
Roy-Engel, A.M.2
Deininger, P.3
-
100
-
-
33645466204
-
LINE-1 RNA splicing and influences on mammalian gene expression
-
Belancio VP, Hedges DJ, Deininger P, (2006) LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Research 34: 1512–1521. 16554555
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 1512-1521
-
-
Belancio, V.P.1
Hedges, D.J.2
Deininger, P.3
-
101
-
-
0344826526
-
RNA truncation by premature polyadenylation attenuates human mobile element activity
-
Perepelitsa-Belancio V, Deininger P, (2003) RNA truncation by premature polyadenylation attenuates human mobile element activity. Nat Genet 35: 363–366. 14625551
-
(2003)
Nat Genet
, vol.35
, pp. 363-366
-
-
Perepelitsa-Belancio, V.1
Deininger, P.2
-
102
-
-
0031559596
-
Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon
-
Hohjoh H, Singer MF, (1997) Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon. J Mol Biol 271: 7–12. 9300051
-
(1997)
J Mol Biol
, vol.271
, pp. 7-12
-
-
Hohjoh, H.1
Singer, M.F.2
-
103
-
-
80054684150
-
Endogenous APOBEC3B Restricts LINE-1 Retrotransposition in Transformed Cells and Human Embryonic Stem Cells
-
Wissing S, Montano M, Garcia-Perez JL, Moran JV, Greene WC, (2011) Endogenous APOBEC3B Restricts LINE-1 Retrotransposition in Transformed Cells and Human Embryonic Stem Cells. Journal of Biological Chemistry 286: 36427–36437. doi: 10.1074/jbc.M111.251058 21878639
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 36427-36437
-
-
Wissing, S.1
Montano, M.2
Garcia-Perez, J.L.3
Moran, J.V.4
Greene, W.C.5
-
104
-
-
34548799740
-
LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex
-
Goodier JL, Zhang L, Vetter MR, Kazazian HH, Jr. (2007) LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex. Mol Cell Biol 27: 6469–6483. 17562864
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6469-6483
-
-
Goodier, J.L.1
Zhang, L.2
Vetter, M.R.3
Kazazian, H.H.4
-
105
-
-
4344567317
-
ZAP is a CRM1-dependent nucleocytoplasmic shuttling protein
-
Liu L, Chen G, Ji X, Gao G, (2004) ZAP is a CRM1-dependent nucleocytoplasmic shuttling protein. Biochemical and biophysical research communications 321: 517–523. 15358138
-
(2004)
Biochemical and biophysical research communications
, vol.321
, pp. 517-523
-
-
Liu, L.1
Chen, G.2
Ji, X.3
Gao, G.4
-
106
-
-
77955495399
-
Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells
-
Garcia-Perez JL, Morell M, Scheys JO, Kulpa DA, Morell S, et al. (2010) Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells. Nature 466: 769–773. doi: 10.1038/nature09209 20686575
-
(2010)
Nature
, vol.466
, pp. 769-773
-
-
Garcia-Perez, J.L.1
Morell, M.2
Scheys, J.O.3
Kulpa, D.A.4
Morell, S.5
-
107
-
-
0018913047
-
Characterization of a human ovarian teratocarcinoma-derived cell line
-
Zeuthen J, Norgaard JO, Avner P, Fellous M, Wartiovaara J, et al. (1980) Characterization of a human ovarian teratocarcinoma-derived cell line. Int J Cancer 25: 19–32. 6931103
-
(1980)
Int J Cancer
, vol.25
, pp. 19-32
-
-
Zeuthen, J.1
Norgaard, J.O.2
Avner, P.3
Fellous, M.4
Wartiovaara, J.5
-
108
-
-
79955957616
-
Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm
-
Leung AK, Vyas S, Rood JE, Bhutkar A, Sharp PA, et al. (2011) Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm. Mol Cell 42: 489–499. doi: 10.1016/j.molcel.2011.04.015 21596313
-
(2011)
Mol Cell
, vol.42
, pp. 489-499
-
-
Leung, A.K.1
Vyas, S.2
Rood, J.E.3
Bhutkar, A.4
Sharp, P.A.5
-
109
-
-
33846083772
-
The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA
-
Guo X, Ma J, Sun J, Gao G, (2007) The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA. Proc Natl Acad Sci U S A 104: 151–156. 17185417
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 151-156
-
-
Guo, X.1
Ma, J.2
Sun, J.3
Gao, G.4
-
110
-
-
77955065411
-
Somatic expression of LINE-1 elements in human tissues
-
Belancio VP, Roy-Engel AM, Pochampally RR, Deininger P, (2010) Somatic expression of LINE-1 elements in human tissues. Nucleic Acids Res 38: 3909–3922. doi: 10.1093/nar/gkq132 20215437
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3909-3922
-
-
Belancio, V.P.1
Roy-Engel, A.M.2
Pochampally, R.R.3
Deininger, P.4
-
111
-
-
80053144075
-
Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation
-
Zhu Y, Chen G, Lv F, Wang X, Ji X, et al. (2011) Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation. Proc Natl Acad Sci U S A 108: 15834–15839. doi: 10.1073/pnas.1101676108 21876179
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15834-15839
-
-
Zhu, Y.1
Chen, G.2
Lv, F.3
Wang, X.4
Ji, X.5
-
112
-
-
0142060863
-
Expression of the zinc-finger antiviral protein inhibits alphavirus replication
-
Bick MJ, Carroll JW, Gao G, Goff SP, Rice CM, et al. (2003) Expression of the zinc-finger antiviral protein inhibits alphavirus replication. J Virol 77: 11555–11562. 14557641
-
(2003)
J Virol
, vol.77
, pp. 11555-11562
-
-
Bick, M.J.1
Carroll, J.W.2
Gao, G.3
Goff, S.P.4
Rice, C.M.5
-
113
-
-
84868579811
-
Translational repression precedes and is required for ZAP-mediated mRNA decay
-
Zhu Y, Wang X, Goff SP, Gao G, (2012) Translational repression precedes and is required for ZAP-mediated mRNA decay. EMBO J 31: 4236–4246. doi: 10.1038/emboj.2012.271 23023399
-
(2012)
EMBO J
, vol.31
, pp. 4236-4246
-
-
Zhu, Y.1
Wang, X.2
Goff, S.P.3
Gao, G.4
-
114
-
-
41949103837
-
p72 DEAD box RNA helicase is required for optimal function of the zinc-finger antiviral protein
-
Chen G, Guo X, Lv F, Xu Y, Gao G, (2008) p72 DEAD box RNA helicase is required for optimal function of the zinc-finger antiviral protein. Proc Natl Acad Sci U S A 105: 4352–4357. doi: 10.1073/pnas.0712276105 18334637
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4352-4357
-
-
Chen, G.1
Guo, X.2
Lv, F.3
Xu, Y.4
Gao, G.5
-
115
-
-
72149095755
-
Eukaryotic Stress Granules: The Ins and Outs of Translation
-
Buchan JR, Parker R, (2009) Eukaryotic Stress Granules: The Ins and Outs of Translation. Molecular Cell 36: 932–941. doi: 10.1016/j.molcel.2009.11.020 20064460
-
(2009)
Molecular Cell
, vol.36
, pp. 932-941
-
-
Buchan, J.R.1
Parker, R.2
-
116
-
-
84872675863
-
Diversion of stress granules and P-bodies during viral infection
-
Reineke LC, Lloyd RE, (2013) Diversion of stress granules and P-bodies during viral infection. Virology 436: 255–267. doi: 10.1016/j.virol.2012.11.017 23290869
-
(2013)
Virology
, vol.436
, pp. 255-267
-
-
Reineke, L.C.1
Lloyd, R.E.2
-
117
-
-
0142060863
-
Expression of the Zinc-Finger Antiviral Protein Inhibits Alphavirus Replication
-
Bick MJ, Carroll J-WN, Gao G, Goff SP, Rice CM, et al. (2003) Expression of the Zinc-Finger Antiviral Protein Inhibits Alphavirus Replication. Journal of Virology 77: 11555–11562. 14557641
-
(2003)
Journal of Virology
, vol.77
, pp. 11555-11562
-
-
Bick, M.J.1
Carroll, J.-W.N.2
Gao, G.3
Goff, S.P.4
Rice, C.M.5
-
118
-
-
33847194606
-
Inhibition of filovirus replication by the zinc finger antiviral protein
-
Muller S, Moller P, Bick MJ, Wurr S, Becker S, et al. (2007) Inhibition of filovirus replication by the zinc finger antiviral protein. J Virol 81: 2391–2400. 17182693
-
(2007)
J Virol
, vol.81
, pp. 2391-2400
-
-
Muller, S.1
Moller, P.2
Bick, M.J.3
Wurr, S.4
Becker, S.5
-
119
-
-
84884747041
-
Inhibition of hepatitis B virus replication by the host zinc finger antiviral protein
-
Mao R, Nie H, Cai D, Zhang J, Liu H, et al. (2013) Inhibition of hepatitis B virus replication by the host zinc finger antiviral protein. PLoS Pathog 9: e1003494. doi: 10.1371/journal.ppat.1003494 23853601
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003494
-
-
Mao, R.1
Nie, H.2
Cai, D.3
Zhang, J.4
Liu, H.5
-
120
-
-
0022531962
-
Conservation throughout mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one
-
Burton FH, Loeb DD, Voliva CF, Martin SL, Edgell MH, et al. (1986) Conservation throughout mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one. J Mol Biol 187: 291–304. 3009828
-
(1986)
J Mol Biol
, vol.187
, pp. 291-304
-
-
Burton, F.H.1
Loeb, D.D.2
Voliva, C.F.3
Martin, S.L.4
Edgell, M.H.5
-
121
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
Smit AF, Toth G, Riggs AD, Jurka J, (1995) Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246: 401–417. 7877164
-
(1995)
J Mol Biol
, vol.246
, pp. 401-417
-
-
Smit, A.F.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
122
-
-
84903469330
-
Reviving the dead: history and reactivation of an extinct l1
-
Yang L, Brunsfeld J, Scott L, Wichman H, (2014) Reviving the dead: history and reactivation of an extinct l1. PLoS Genet 10: e1004395. doi: 10.1371/journal.pgen.1004395 24968166
-
(2014)
PLoS Genet
, vol.10
, pp. e1004395
-
-
Yang, L.1
Brunsfeld, J.2
Scott, L.3
Wichman, H.4
-
123
-
-
19344362934
-
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G
-
Sawyer SL, Emerman M, Malik HS, (2004) Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G. PLoS Biol 2: E275. 15269786
-
(2004)
PLoS Biol
, vol.2
, pp. E275
-
-
Sawyer, S.L.1
Emerman, M.2
Malik, H.S.3
-
124
-
-
14544281087
-
Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain
-
Sawyer SL, Wu LI, Emerman M, Malik HS, (2005) Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proc Natl Acad Sci U S A 102: 2832–2837. 15689398
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2832-2837
-
-
Sawyer, S.L.1
Wu, L.I.2
Emerman, M.3
Malik, H.S.4
-
125
-
-
33845227935
-
Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis
-
Sawyer SL, Malik HS, (2006) Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis. Proc Natl Acad Sci U S A 103: 17614–17619. 17101967
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17614-17619
-
-
Sawyer, S.L.1
Malik, H.S.2
-
126
-
-
33846895873
-
Selective inhibition of Alu retrotransposition by APOBEC3G
-
Hulme AE, Bogerd HP, Cullen BR, Moran JV, (2007) Selective inhibition of Alu retrotransposition by APOBEC3G. Gene 390: 199–205. 17079095
-
(2007)
Gene
, vol.390
, pp. 199-205
-
-
Hulme, A.E.1
Bogerd, H.P.2
Cullen, B.R.3
Moran, J.V.4
-
127
-
-
0027248510
-
Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element
-
Dombroski BA, Scott AF, Kazazian HH, Jr. (1993) Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element. Proc Natl Acad Sci U S A 90: 6513–6517. 8393568
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 6513-6517
-
-
Dombroski, B.A.1
Scott, A.F.2
Kazazian, H.H.3
-
128
-
-
0028035747
-
A modified indicator gene for selection of retrotransposition events in mammalian cells
-
Freeman JD, Goodchild NL, Mager DL, (1994) A modified indicator gene for selection of retrotransposition events in mammalian cells. Biotechniques 17: 46, 48–49, 52. 7946311
-
(1994)
Biotechniques
, vol.17
, pp. 49-52
-
-
Freeman, J.D.1
Goodchild, N.L.2
Mager, D.L.3
-
129
-
-
0025951042
-
A de novo Alu insertion results in neurofibromatosis type 1
-
Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, et al. (1991) A de novo Alu insertion results in neurofibromatosis type 1. Nature 353: 864–866. 1719426
-
(1991)
Nature
, vol.353
, pp. 864-866
-
-
Wallace, M.R.1
Andersen, L.B.2
Saulino, A.M.3
Gregory, P.E.4
Glover, T.W.5
-
130
-
-
0036615680
-
A Tetrahymena thermophila ribozyme-based indicator gene to detect transposition of marked retroelements in mammalian cells
-
Esnault C, Casella JF, Heidmann T, (2002) A Tetrahymena thermophila ribozyme-based indicator gene to detect transposition of marked retroelements in mammalian cells. Nucleic Acids Res 30: e49. 12034850
-
(2002)
Nucleic Acids Res
, vol.30
, pp. e49
-
-
Esnault, C.1
Casella, J.F.2
Heidmann, T.3
-
131
-
-
31644442239
-
APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells
-
Bogerd HP, Wiegand HL, Doehle BP, Lueders KK, Cullen BR, (2006) APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells. Nucleic Acids Res 34: 89–95. 16407327
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 89-95
-
-
Bogerd, H.P.1
Wiegand, H.L.2
Doehle, B.P.3
Lueders, K.K.4
Cullen, B.R.5
-
132
-
-
22144478256
-
MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
-
Liu J, Valencia-Sanchez MA, Hannon GJ, Parker R, (2005) MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat Cell Biol 7: 719–723. 15937477
-
(2005)
Nat Cell Biol
, vol.7
, pp. 719-723
-
-
Liu, J.1
Valencia-Sanchez, M.A.2
Hannon, G.J.3
Parker, R.4
-
133
-
-
0037451173
-
The RasGAP-associated endoribonuclease G3BP assembles stress granules
-
Tourriere H, Chebli K, Zekri L, Courselaud B, Blanchard JM, et al. (2003) The RasGAP-associated endoribonuclease G3BP assembles stress granules. J Cell Biol 160: 823–831. 12642610
-
(2003)
J Cell Biol
, vol.160
, pp. 823-831
-
-
Tourriere, H.1
Chebli, K.2
Zekri, L.3
Courselaud, B.4
Blanchard, J.M.5
-
134
-
-
0029927505
-
Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels
-
Shevchenko A, Wilm M, Vorm O, Mann M, (1996) Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels. Analytical Chemistry 68: 850–858. 8779443
-
(1996)
Analytical Chemistry
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
135
-
-
0036646079
-
Automation of Nanoscale Microcapillary Liquid Chromatography,àíTandem Mass Spectrometry with a Vented Column
-
Licklider LJ, Thoreen CC, Peng J, Gygi SP, (2002) Automation of Nanoscale Microcapillary Liquid Chromatography,àíTandem Mass Spectrometry with a Vented Column. Analytical Chemistry 74: 3076–3083. 12141667
-
(2002)
Analytical Chemistry
, vol.74
, pp. 3076-3083
-
-
Licklider, L.J.1
Thoreen, C.C.2
Peng, J.3
Gygi, S.P.4
-
136
-
-
30744438115
-
Computational Proteomics Analysis System (CPAS): An Extensible, Open-Source Analytic System for Evaluating and Publishing Proteomic Data and High Throughput Biological Experiments
-
Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, et al. (2005) Computational Proteomics Analysis System (CPAS): An Extensible, Open-Source Analytic System for Evaluating and Publishing Proteomic Data and High Throughput Biological Experiments. Journal of Proteome Research 5: 112–121.
-
(2005)
Journal of Proteome Research
, vol.5
, pp. 112-121
-
-
Rauch, A.1
Bellew, M.2
Eng, J.3
Fitzgibbon, M.4
Holzman, T.5
-
137
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig R, Beavis RC, (2004) TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20: 1466–1467. 14976030
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
138
-
-
0042338362
-
A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
-
Nesvizhskii AI, Keller A, Kolker E, Aebersold R, (2003) A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry. Analytical Chemistry 75: 4646–4658. 14632076
-
(2003)
Analytical Chemistry
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
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139
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-
0037108887
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Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
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Keller A, Nesvizhskii AI, Kolker E, Aebersold R, (2002) Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search. Analytical Chemistry 74: 5383–5392. 12403597
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(2002)
Analytical Chemistry
, vol.74
, pp. 5383-5392
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Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
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