-
1
-
-
0033631415
-
The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
-
Furano AV, (2000) The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons. Prog Nucleic Acid Res Mol Biol 64: 255-294.
-
(2000)
Prog Nucleic Acid Res Mol Biol
, vol.64
, pp. 255-294
-
-
Furano, A.V.1
-
2
-
-
33745864020
-
Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles
-
Kulpa DA, Moran JV, (2006) Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles. Nat Struct Mol Biol 13: 655-660.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 655-660
-
-
Kulpa, D.A.1
Moran, J.V.2
-
3
-
-
0035144498
-
Human L1 retrotransposition: cis preference versus trans complementation
-
Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, et al. (2001) Human L1 retrotransposition: cis preference versus trans complementation. Mol Cell Biol 21: 1429-1439.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
-
4
-
-
30944454495
-
Unconventional translation of mammalian LINE-1 retrotransposons
-
Alisch RS, Garcia-Perez JL, Muotri AR, Gage FH, Moran JV, (2006) Unconventional translation of mammalian LINE-1 retrotransposons. Genes Dev 20: 210-224.
-
(2006)
Genes Dev
, vol.20
, pp. 210-224
-
-
Alisch, R.S.1
Garcia-Perez, J.L.2
Muotri, A.R.3
Gage, F.H.4
Moran, J.V.5
-
5
-
-
33644854246
-
The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition
-
Li PW, Li J, Timmerman SL, Krushel LA, Martin SL, (2006) The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition. Nucleic Acids Res 34: 853-864.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 853-864
-
-
Li, P.W.1
Li, J.2
Timmerman, S.L.3
Krushel, L.A.4
Martin, S.L.5
-
6
-
-
40449139336
-
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health
-
Belancio VP, Hedges DJ, Deininger P, (2008) Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res 18: 343-358.
-
(2008)
Genome Res
, vol.18
, pp. 343-358
-
-
Belancio, V.P.1
Hedges, D.J.2
Deininger, P.3
-
7
-
-
33646071891
-
LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease: mutation detection bias and multiple mechanisms of target gene disruption
-
Chen JM, Ferec C, Cooper DN, (2006) LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease: mutation detection bias and multiple mechanisms of target gene disruption. J Biomed Biotechnol 2006: 56182.
-
(2006)
J Biomed Biotechnol
, vol.2006
, pp. 56182
-
-
Chen, J.M.1
Ferec, C.2
Cooper, D.N.3
-
9
-
-
0037047355
-
Genomic deletions created upon LINE-1 retrotransposition
-
Gilbert N, Lutz-Prigge S, Moran JV, (2002) Genomic deletions created upon LINE-1 retrotransposition. Cell 110: 315-325.
-
(2002)
Cell
, vol.110
, pp. 315-325
-
-
Gilbert, N.1
Lutz-Prigge, S.2
Moran, J.V.3
-
10
-
-
0037047396
-
Human L1 retrotransposition is associated with genetic instability in vivo
-
Symer DE, Connelly C, Szak ST, Caputo EM, Cost GJ, et al. (2002) Human L1 retrotransposition is associated with genetic instability in vivo. Cell 110: 327-338.
-
(2002)
Cell
, vol.110
, pp. 327-338
-
-
Symer, D.E.1
Connelly, C.2
Szak, S.T.3
Caputo, E.M.4
Cost, G.J.5
-
11
-
-
34447327537
-
LINE-1 retrotransposition in human embryonic stem cells
-
Garcia-Perez JL, Marchetto MC, Muotri AR, Coufal NG, Gage FH, et al. (2007) LINE-1 retrotransposition in human embryonic stem cells. Hum Mol Genet 16: 1569-1577.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 1569-1577
-
-
Garcia-Perez, J.L.1
Marchetto, M.C.2
Muotri, A.R.3
Coufal, N.G.4
Gage, F.H.5
-
12
-
-
33645068168
-
The human LINE-1 retrotransposon creates DNA double-strand breaks
-
Gasior SL, Wakeman TP, Xu B, Deininger PL, (2006) The human LINE-1 retrotransposon creates DNA double-strand breaks. J Mol Biol 357: 1383-1393.
-
(2006)
J Mol Biol
, vol.357
, pp. 1383-1393
-
-
Gasior, S.L.1
Wakeman, T.P.2
Xu, B.3
Deininger, P.L.4
-
13
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q, Moran JV, Kazazian HH Jr, Boeke JD, (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87: 905-916.
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
14
-
-
0038247887
-
Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila
-
Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE, (2003) Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol Biol Evol 20: 880-892.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 880-892
-
-
Petrov, D.A.1
Aminetzach, Y.T.2
Davis, J.C.3
Bensasson, D.4
Hirsh, A.E.5
-
16
-
-
58049196782
-
L1 recombination-associated deletions generate human genomic variation
-
Han K, Lee J, Meyer TJ, Remedios P, Goodwin L, et al. (2008) L1 recombination-associated deletions generate human genomic variation. Proc Natl Acad Sci U S A 105: 19366-19371.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 19366-19371
-
-
Han, K.1
Lee, J.2
Meyer, T.J.3
Remedios, P.4
Goodwin, L.5
-
17
-
-
0032478502
-
Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease
-
Burwinkel B, Kilimann MW, (1998) Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease. J Mol Biol 277: 513-517.
-
(1998)
J Mol Biol
, vol.277
, pp. 513-517
-
-
Burwinkel, B.1
Kilimann, M.W.2
-
18
-
-
0027031113
-
Transposable elements and the evolution of genome organization in mammals
-
Wichman HA, Van den Bussche RA, Hamilton MJ, Baker RJ, (1992) Transposable elements and the evolution of genome organization in mammals. Genetica 86: 287-293.
-
(1992)
Genetica
, vol.86
, pp. 287-293
-
-
Wichman, H.A.1
van den Bussche, R.A.2
Hamilton, M.J.3
Baker, R.J.4
-
19
-
-
84866405520
-
Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons
-
Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, et al. (2012) Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol 4: 648-658.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 648-658
-
-
Carbone, L.1
Harris, R.A.2
Mootnick, A.R.3
Milosavljevic, A.4
Martin, D.I.5
-
20
-
-
84866030009
-
C-GATE - catalogue of genes affected by transposable elements
-
Rebollo R, Farivar S, Mager DL, (2012) C-GATE- catalogue of genes affected by transposable elements. Mob DNA 3: 9.
-
(2012)
Mob DNA
, vol.3
, pp. 9
-
-
Rebollo, R.1
Farivar, S.2
Mager, D.L.3
-
21
-
-
84867050577
-
Transposable elements: an abundant and natural source of regulatory sequences for host genes
-
Rebollo R, Romanish MT, Mager DL, (2012) Transposable elements: an abundant and natural source of regulatory sequences for host genes. Annu Rev Genet 46: 21-42.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 21-42
-
-
Rebollo, R.1
Romanish, M.T.2
Mager, D.L.3
-
22
-
-
2442667886
-
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
-
Han JS, Szak ST, Boeke JD, (2004) Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429: 268-274.
-
(2004)
Nature
, vol.429
, pp. 268-274
-
-
Han, J.S.1
Szak, S.T.2
Boeke, J.D.3
-
23
-
-
67650674335
-
X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity
-
Cantrell MA, Carstens BC, Wichman HA, (2009) X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity. PLoS ONE 4: e6252.
-
(2009)
PLoS ONE
, vol.4
-
-
Cantrell, M.A.1
Carstens, B.C.2
Wichman, H.A.3
-
24
-
-
77953703353
-
LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation
-
Chow JC, Ciaudo C, Fazzari MJ, Mise N, Servant N, et al. (2010) LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell 141: 956-969.
-
(2010)
Cell
, vol.141
, pp. 956-969
-
-
Chow, J.C.1
Ciaudo, C.2
Fazzari, M.J.3
Mise, N.4
Servant, N.5
-
25
-
-
0842303342
-
The Lyon and the LINE hypothesis
-
Lyon MF, (2003) The Lyon and the LINE hypothesis. Semin Cell Dev Biol 14: 313-318.
-
(2003)
Semin Cell Dev Biol
, vol.14
, pp. 313-318
-
-
Lyon, M.F.1
-
26
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, et al. (2005) Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435: 903-910.
-
(2005)
Nature
, vol.435
, pp. 903-910
-
-
Muotri, A.R.1
Chu, V.T.2
Marchetto, M.C.3
Deng, W.4
Moran, J.V.5
-
27
-
-
69349096044
-
L1 retrotransposition in human neural progenitor cells
-
Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, et al. (2009) L1 retrotransposition in human neural progenitor cells. Nature 460: 1127-1131.
-
(2009)
Nature
, vol.460
, pp. 1127-1131
-
-
Coufal, N.G.1
Garcia-Perez, J.L.2
Peng, G.E.3
Yeo, G.W.4
Mu, Y.5
-
28
-
-
33745593721
-
Generation of neuronal variability and complexity
-
Muotri AR, Gage FH, (2006) Generation of neuronal variability and complexity. Nature 441: 1087-1093.
-
(2006)
Nature
, vol.441
, pp. 1087-1093
-
-
Muotri, A.R.1
Gage, F.H.2
-
29
-
-
41949093041
-
Possible involvement of SINEs in mammalian-specific brain formation
-
Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, et al. (2008) Possible involvement of SINEs in mammalian-specific brain formation. Proc Natl Acad Sci U S A 105: 4220-4225.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4220-4225
-
-
Sasaki, T.1
Nishihara, H.2
Hirakawa, M.3
Fujimura, K.4
Tanaka, M.5
-
30
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
Smit AF, (1996) The origin of interspersed repeats in the human genome. Curr Opin Genet Dev 6: 743-748.
-
(1996)
Curr Opin Genet Dev
, vol.6
, pp. 743-748
-
-
Smit, A.F.1
-
31
-
-
80052063301
-
A Jurassic eutherian mammal and divergence of marsupials and placentals
-
Luo ZX, Yuan CX, Meng QJ, Ji Q, (2011) A Jurassic eutherian mammal and divergence of marsupials and placentals. Nature 476: 442-445.
-
(2011)
Nature
, vol.476
, pp. 442-445
-
-
Luo, Z.X.1
Yuan, C.X.2
Meng, Q.J.3
Ji, Q.4
-
32
-
-
1642544094
-
Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys
-
Boissinot S, Roos C, Furano AV, (2004) Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys. J Mol Evol 58: 122-130.
-
(2004)
J Mol Evol
, vol.58
, pp. 122-130
-
-
Boissinot, S.1
Roos, C.2
Furano, A.V.3
-
33
-
-
0027980860
-
The dynamics of murine LINE-1 subfamily amplification
-
Casavant NC, Hardies SC, (1994) The dynamics of murine LINE-1 subfamily amplification. J Mol Biol 241: 390-397.
-
(1994)
J Mol Biol
, vol.241
, pp. 390-397
-
-
Casavant, N.C.1
Hardies, S.C.2
-
34
-
-
84875313166
-
Revisiting the evolution of mouse LINE-1 in the genomic era
-
Sookdeo A, Hepp CM, McClure MA, Boissinot S, (2013) Revisiting the evolution of mouse LINE-1 in the genomic era. Mob DNA 4: 3.
-
(2013)
Mob DNA
, vol.4
, pp. 3
-
-
Sookdeo, A.1
Hepp, C.M.2
McClure, M.A.3
Boissinot, S.4
-
35
-
-
30044433182
-
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
-
Khan H, Smit A, Boissinot S, (2006) Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res 16: 78-87.
-
(2006)
Genome Res
, vol.16
, pp. 78-87
-
-
Khan, H.1
Smit, A.2
Boissinot, S.3
-
36
-
-
0027397181
-
The evolution of long interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family
-
Pascale E, Liu C, Valle E, Usdin K, Furano AV, (1993) The evolution of long interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family. J Mol Evol 36: 9-20.
-
(1993)
J Mol Evol
, vol.36
, pp. 9-20
-
-
Pascale, E.1
Liu, C.2
Valle, E.3
Usdin, K.4
Furano, A.V.5
-
37
-
-
0027965254
-
Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences
-
Adey NB, Schichman SA, Graham DK, Peterson SN, Edgell MH, et al. (1994) Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences. Mol Biol Evol 11: 778-789.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 778-789
-
-
Adey, N.B.1
Schichman, S.A.2
Graham, D.K.3
Peterson, S.N.4
Edgell, M.H.5
-
38
-
-
0030031643
-
Computer simulation of transposable element evolution: random template and strict master models
-
Clough JE, Foster JA, Barnett M, Wichman HA, (1996) Computer simulation of transposable element evolution: random template and strict master models. J Mol Evol 42: 52-58.
-
(1996)
J Mol Evol
, vol.42
, pp. 52-58
-
-
Clough, J.E.1
Foster, J.A.2
Barnett, M.3
Wichman, H.A.4
-
39
-
-
0031670224
-
Molecular evolution of two lineages of L1 (LINE-1) retrotransposons in the California mouse, Peromyscus californicus
-
Casavant NC, Lee RN, Sherman AN, Wichman HA, (1998) Molecular evolution of two lineages of L1 (LINE-1) retrotransposons in the California mouse, Peromyscus californicus. Genetics 150: 345-357.
-
(1998)
Genetics
, vol.150
, pp. 345-357
-
-
Casavant, N.C.1
Lee, R.N.2
Sherman, A.N.3
Wichman, H.A.4
-
40
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
41
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, et al. (2003) Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A 100: 5280-5285.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
-
42
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
43
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder JA, Walsh CP, Bestor TH, (1997) Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13: 335-340.
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
44
-
-
4544223707
-
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
-
Bourc'his D, Bestor TH, (2004) Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431: 96-99.
-
(2004)
Nature
, vol.431
, pp. 96-99
-
-
Bourc'his, D.1
Bestor, T.H.2
-
45
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ, (2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-747.
-
(2007)
Science
, vol.316
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
46
-
-
80054684150
-
Endogenous APOBEC3B restricts LINE-1 retrotransposition in transformed cells and human embryonic stem cells
-
Wissing S, Montano M, Garcia-Perez JL, Moran JV, Greene WC, (2011) Endogenous APOBEC3B restricts LINE-1 retrotransposition in transformed cells and human embryonic stem cells. J Biol Chem 286: 36427-36437.
-
(2011)
J Biol Chem
, vol.286
, pp. 36427-36437
-
-
Wissing, S.1
Montano, M.2
Garcia-Perez, J.L.3
Moran, J.V.4
Greene, W.C.5
-
48
-
-
65649135139
-
Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition
-
Suzuki J, Yamaguchi K, Kajikawa M, Ichiyanagi K, Adachi N, et al. (2009) Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition. PLoS Genet 5: e1000461.
-
(2009)
PLoS Genet
, vol.5
-
-
Suzuki, J.1
Yamaguchi, K.2
Kajikawa, M.3
Ichiyanagi, K.4
Adachi, N.5
-
49
-
-
6344262106
-
LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes
-
Waters PD, Dobigny G, Pardini AT, Robinson TJ, (2004) LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes. Chromosoma 113: 137-144.
-
(2004)
Chromosoma
, vol.113
, pp. 137-144
-
-
Waters, P.D.1
Dobigny, G.2
Pardini, A.T.3
Robinson, T.J.4
-
50
-
-
40849098032
-
Loss of LINE-1 activity in the megabats
-
Cantrell MA, Scott L, Brown CJ, Martinez AR, Wichman HA, (2008) Loss of LINE-1 activity in the megabats. Genetics 178: 393-404.
-
(2008)
Genetics
, vol.178
, pp. 393-404
-
-
Cantrell, M.A.1
Scott, L.2
Brown, C.J.3
Martinez, A.R.4
Wichman, H.A.5
-
51
-
-
23844436019
-
Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents
-
Grahn RA, Rinehart TA, Cantrell MA, Wichman HA, (2005) Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents. Cytogenet Genome Res 110: 407-415.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 407-415
-
-
Grahn, R.A.1
Rinehart, T.A.2
Cantrell, M.A.3
Wichman, H.A.4
-
52
-
-
0034128820
-
The end of the LINE?: lack of recent L1 activity in a group of South American rodents
-
Casavant NC, Scott L, Cantrell MA, Wiggins LE, Baker RJ, et al. (2000) The end of the LINE?: lack of recent L1 activity in a group of South American rodents. Genetics 154: 1809-1817.
-
(2000)
Genetics
, vol.154
, pp. 1809-1817
-
-
Casavant, N.C.1
Scott, L.2
Cantrell, M.A.3
Wiggins, L.E.4
Baker, R.J.5
-
53
-
-
23844443812
-
SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms
-
Rinehart TA, Grahn RA, Wichman HA, (2005) SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms. Cytogenet Genome Res 110: 416-425.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 416-425
-
-
Rinehart, T.A.1
Grahn, R.A.2
Wichman, H.A.3
-
54
-
-
84860335554
-
A non-LTR retroelement extinction in Spermophilus tridecemlineatus
-
Platt RN 2nd, Ray DA, (2012) A non-LTR retroelement extinction in Spermophilus tridecemlineatus. Gene 500: 47-53.
-
(2012)
Gene
, vol.500
, pp. 47-53
-
-
Platt II, R.N.1
Ray, D.A.2
-
56
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
-
57
-
-
0034284437
-
Repbase update: a database and an electronic journal of repetitive elements
-
Jurka J, (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 16: 418-420.
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
58
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
Smit AF, Toth G, Riggs AD, Jurka J, (1995) Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246: 401-417.
-
(1995)
J Mol Biol
, vol.246
, pp. 401-417
-
-
Smit, A.F.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
59
-
-
70449379045
-
Genome sequence, comparative analysis, and population genetics of the domestic horse
-
Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, et al. (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326: 865-867.
-
(2009)
Science
, vol.326
, pp. 865-867
-
-
Wade, C.M.1
Giulotto, E.2
Sigurdsson, S.3
Zoli, M.4
Gnerre, S.5
-
60
-
-
0023429458
-
Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence
-
Scott AF, Schmeckpeper BJ, Abdelrazik M, Comey CT, O'Hara B, et al. (1987) Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence. Genomics 1: 113-125.
-
(1987)
Genomics
, vol.1
, pp. 113-125
-
-
Scott, A.F.1
Schmeckpeper, B.J.2
Abdelrazik, M.3
Comey, C.T.4
O'Hara, B.5
-
61
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran JV, Holmes SE, Naas TP, DeBerardinis RJ, Boeke JD, et al. (1996) High frequency retrotransposition in cultured mammalian cells. Cell 87: 917-927.
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
-
62
-
-
2442671716
-
A highly active synthetic mammalian retrotransposon
-
Han JS, Boeke JD, (2004) A highly active synthetic mammalian retrotransposon. Nature 429: 314-318.
-
(2004)
Nature
, vol.429
, pp. 314-318
-
-
Han, J.S.1
Boeke, J.D.2
-
63
-
-
79955900091
-
Evolutionary conservation of the functional modularity of primate and murine LINE-1 elements
-
Wagstaff BJ, Barnerssoi M, Roy-Engel AM, (2011) Evolutionary conservation of the functional modularity of primate and murine LINE-1 elements. PLoS ONE 6: e19672.
-
(2011)
PLoS ONE
, vol.6
-
-
Wagstaff, B.J.1
Barnerssoi, M.2
Roy-Engel, A.M.3
-
64
-
-
0032518909
-
An actively retrotransposing, novel subfamily of mouse L1 elements
-
Naas TP, DeBerardinis RJ, Moran JV, Ostertag EM, Kingsmore SF, et al. (1998) An actively retrotransposing, novel subfamily of mouse L1 elements. EMBO J 17: 590-597.
-
(1998)
EMBO J
, vol.17
, pp. 590-597
-
-
Naas, T.P.1
DeBerardinis, R.J.2
Moran, J.V.3
Ostertag, E.M.4
Kingsmore, S.F.5
-
65
-
-
17344363489
-
Positional cloning of the gene for X-linked retinitis pigmentosa 2
-
Schwahn U, Lenzner S, Dong J, Feil S, Hinzmann B, et al. (1998) Positional cloning of the gene for X-linked retinitis pigmentosa 2. Nat Genet 19: 327-332.
-
(1998)
Nat Genet
, vol.19
, pp. 327-332
-
-
Schwahn, U.1
Lenzner, S.2
Dong, J.3
Feil, S.4
Hinzmann, B.5
-
66
-
-
0032816281
-
Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells
-
Kimberland ML, Divoky V, Prchal J, Schwahn U, Berger W, et al. (1999) Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells. Hum Mol Genet 8: 1557-1560.
-
(1999)
Hum Mol Genet
, vol.8
, pp. 1557-1560
-
-
Kimberland, M.L.1
Divoky, V.2
Prchal, J.3
Schwahn, U.4
Berger, W.5
-
67
-
-
79955912784
-
Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs
-
An W, Dai L, Niewiadomska AM, Yetil A, O'Donnell KA, et al. (2011) Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs. Mob DNA 2: 2.
-
(2011)
Mob DNA
, vol.2
, pp. 2
-
-
An, W.1
Dai, L.2
Niewiadomska, A.M.3
Yetil, A.4
O'Donnell, K.A.5
-
68
-
-
0034653773
-
Determination of L1 retrotransposition kinetics in cultured cells
-
Ostertag EM, Prak ET, DeBerardinis RJ, Moran JV, Kazazian HH Jr, (2000) Determination of L1 retrotransposition kinetics in cultured cells. Nucleic Acids Res 28: 1418-1423.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1418-1423
-
-
Ostertag, E.M.1
Prak, E.T.2
DeBerardinis, R.J.3
Moran, J.V.4
Kazazian Jr., H.H.5
-
69
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R, Batzer MA, (2009) The impact of retrotransposons on human genome evolution. Nat Rev Genet 10: 691-703.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
70
-
-
0016629918
-
The bottleneck effect and genetic variability in populations
-
Nei M, Maruyama T, Chakraborty R, (1975) The bottleneck effect and genetic variability in populations. Evolution pp. 1-10.
-
(1975)
Evolution
, pp. 1-10
-
-
Nei, M.1
Maruyama, T.2
Chakraborty, R.3
-
71
-
-
0002110973
-
-
In: Berg DE, Howe MM, editors. Mobile DNA. Washington DC: American Society for Microbiology
-
Hutchison CA, III, Hardies SC, Loeb DD, Shehee WR, Edgell MH (1989) LINEs and related retroposons: long interspersed repeated sequences in the eucaryotic genome. In: Berg DE, Howe MM, editors. Mobile DNA. Washington DC: American Society for Microbiology. pp. 593-617.
-
(1989)
LINEs and related retroposons: Long interspersed repeated sequences in the eucaryotic genome
, pp. 593-617
-
-
Hutchison III, C.A.1
Hardies, S.C.2
Loeb, D.D.3
Shehee, W.R.4
Edgell, M.H.5
-
72
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish TA, Gilbert N, Myers JS, Vincent BJ, Stamato TD, et al. (2002) DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat Genet 31: 159-165.
-
(2002)
Nat Genet
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
Gilbert, N.2
Myers, J.S.3
Vincent, B.J.4
Stamato, T.D.5
-
73
-
-
84871835084
-
Molecular reconstruction of extinct LINE-1 elements and their interaction with nonautonomous elements
-
Wagstaff BJ, Kroutter EN, Derbes RS, Belancio VP, Roy-Engel AM, (2013) Molecular reconstruction of extinct LINE-1 elements and their interaction with nonautonomous elements. Mol Biol Evol 30: 88-99.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 88-99
-
-
Wagstaff, B.J.1
Kroutter, E.N.2
Derbes, R.S.3
Belancio, V.P.4
Roy-Engel, A.M.5
-
74
-
-
33645466204
-
LINE-1 RNA splicing and influences on mammalian gene expression
-
Belancio VP, Hedges DJ, Deininger P, (2006) LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Res 34: 1512-1521.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1512-1521
-
-
Belancio, V.P.1
Hedges, D.J.2
Deininger, P.3
-
75
-
-
0027219419
-
Synchronous expression of LINE-1 RNA and protein in mouse embryonal carcinoma cells
-
Martin SL, Branciforte D, (1993) Synchronous expression of LINE-1 RNA and protein in mouse embryonal carcinoma cells. Mol Cell Biol 13: 5383-5392.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 5383-5392
-
-
Martin, S.L.1
Branciforte, D.2
-
76
-
-
84878368026
-
LINE-1 and Alu retrotransposition exhibit clonal variation
-
Streva VA, Faber ZJ, Deininger PL, (2013) LINE-1 and Alu retrotransposition exhibit clonal variation. Mob DNA 4: 16.
-
(2013)
Mob DNA
, vol.4
, pp. 16
-
-
Streva, V.A.1
Faber, Z.J.2
Deininger, P.L.3
-
77
-
-
0030662074
-
Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells
-
Ivics Z, Hackett PB, Plasterk RH, Izsvak Z, (1997) Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells. Cell 91: 501-510.
-
(1997)
Cell
, vol.91
, pp. 501-510
-
-
Ivics, Z.1
Hackett, P.B.2
Plasterk, R.H.3
Izsvak, Z.4
-
78
-
-
84860162273
-
The Sleeping Beauty transposon toolbox
-
Ammar I, Izsvak Z, Ivics Z, (2012) The Sleeping Beauty transposon toolbox. Methods Mol Biol 859: 229-240.
-
(2012)
Methods Mol Biol
, vol.859
, pp. 229-240
-
-
Ammar, I.1
Izsvak, Z.2
Ivics, Z.3
-
79
-
-
0025358767
-
Eukaryotic coupled translation of tandem cistrons: identification of the influenza B virus BM2 polypeptide
-
Horvath CM, Williams MA, Lamb RA, (1990) Eukaryotic coupled translation of tandem cistrons: identification of the influenza B virus BM2 polypeptide. EMBO J 9: 2639-2647.
-
(1990)
EMBO J
, vol.9
, pp. 2639-2647
-
-
Horvath, C.M.1
Williams, M.A.2
Lamb, R.A.3
-
80
-
-
67649099727
-
The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained
-
Smith JD, Gregory TR, (2009) The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained. Biol Lett 5: 347-351.
-
(2009)
Biol Lett
, vol.5
, pp. 347-351
-
-
Smith, J.D.1
Gregory, T.R.2
-
81
-
-
0036006429
-
A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves
-
Gregory TR, (2002) A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves. Evolution 56: 121-130.
-
(2002)
Evolution
, vol.56
, pp. 121-130
-
-
Gregory, T.R.1
-
82
-
-
0026399675
-
On the evolution of genome size of birds
-
Tiersch TR, Wachtel SS, (1991) On the evolution of genome size of birds. J Hered 82: 363-368.
-
(1991)
J Hered
, vol.82
, pp. 363-368
-
-
Tiersch, T.R.1
Wachtel, S.S.2
-
83
-
-
0014951620
-
Changes in the amount of DNA in cell nuclei during vertebrate evolution
-
Szarski H, (1970) Changes in the amount of DNA in cell nuclei during vertebrate evolution. Nature 226: 651-652.
-
(1970)
Nature
, vol.226
, pp. 651-652
-
-
Szarski, H.1
-
85
-
-
0036021699
-
Transposable elements and the evolution of genome size in eukaryotes
-
Kidwell MG, (2002) Transposable elements and the evolution of genome size in eukaryotes. Genetica 115: 49-63.
-
(2002)
Genetica
, vol.115
, pp. 49-63
-
-
Kidwell, M.G.1
-
86
-
-
0021101153
-
Size and structure of the highly repetitive BAM HI element in mice
-
Fanning TG, (1983) Size and structure of the highly repetitive BAM HI element in mice. Nucleic Acids Res 11: 5073-5091.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 5073-5091
-
-
Fanning, T.G.1
-
87
-
-
0030094146
-
CENSOR-a program for identification and elimination of repetitive elements from DNA sequences
-
Jurka J, Klonowski P, Dagman V, Pelton P, (1996) CENSOR-a program for identification and elimination of repetitive elements from DNA sequences. Comput Chem 20: 119-121.
-
(1996)
Comput Chem
, vol.20
, pp. 119-121
-
-
Jurka, J.1
Klonowski, P.2
Dagman, V.3
Pelton, P.4
-
88
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
89
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
91
-
-
0034535526
-
Isolation of markers from recently transposed LINE-1 retrotransposons
-
Cantrell MA, Grahn RA, Scott L, Wichman HA, (2000) Isolation of markers from recently transposed LINE-1 retrotransposons. Biotechniques 29: 1310-1316.
-
(2000)
Biotechniques
, vol.29
, pp. 1310-1316
-
-
Cantrell, M.A.1
Grahn, R.A.2
Scott, L.3
Wichman, H.A.4
-
92
-
-
33845484658
-
Active retrotransposition by a synthetic L1 element in mice
-
An W, Han JS, Wheelan SJ, Davis ES, Coombes CE, et al. (2006) Active retrotransposition by a synthetic L1 element in mice. Proc Natl Acad Sci U S A 103: 18662-18667.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18662-18667
-
-
An, W.1
Han, J.S.2
Wheelan, S.J.3
Davis, E.S.4
Coombes, C.E.5
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