PGTools: A software suite for proteogenomic data analysis and visualization

Journal of Proteome Research

Volumn 14, Issue 5, 2015, Pages 2255-2266

  Nagaraj, Shivashankar H ^a   Waddell, Nicola ^a   Madugundu, Anil K ^c   Wood, Scott ^a   Jones, Alun ^a   Mandyam, Ramya A ^a   Nones, Katia ^a   Pearson, John V ^a   Grimmond, Sean M ^a,b  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b UNIVERSITY OF GLASGOW   (United Kingdom)

^c INSTITUTE OF BIOINFORMATICS   (India)

Author keywords

automated workflows; cancer; mass spectrometry; mutated peptides; noncoding RNA; proteogenomics; pseudogenes; RNA seq

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CELL FRACTIONATION; COLORECTAL CANCER; COMPUTER INTERFACE; DATA ANALYSIS; DNA SEQUENCE; GENOMICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; LIQUID CHROMATOGRAPHY; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN PROTEIN INTERACTION; PROTEOGENOMICS; PROTEOMICS; SOMATIC MUTATION; TANDEM MASS SPECTROMETRY; CHEMISTRY; COLORECTAL TUMOR; COMPUTER PROGRAM; GENETICS; HUMAN CHROMOSOME; MASS SPECTROMETRY; MOLECULAR GENETICS; OPEN READING FRAME; PANCREAS TUMOR; PROCEDURES; SEQUENCE ANALYSIS; STATISTICS AND NUMERICAL DATA; TUMOR CELL LINE;

PROTEOME; TRANSCRIPTOME;

CELL LINE, TUMOR; CHROMOSOMES, HUMAN; COLORECTAL NEOPLASMS; DATABASES, PROTEIN; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE ANNOTATION; OPEN READING FRAMES; PANCREATIC NEOPLASMS; PROTEOME; PROTEOMICS; SEQUENCE ANALYSIS, RNA; SOFTWARE; TRANSCRIPTOME;

EID: 84929657446     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b00029     Document Type: Article

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