-
1
-
-
79960179572
-
The human proteome project: Current state and future direction
-
(M111.009993)
-
P. Legrain, R. Aebersold, A. Archakov, A. Bairoch, K. Bala, L. Beretta, J. Bergeron, C.H. Borchers, G.L. Corthals, C.E. Costello, E.W. Deutsch, B. Domon, W. Hancock, F. He, D. Hochstrasser, G. Marko-Varga, G.H. Salekdeh, S. Sechi, M. Snyder, and S. Srivastava The human proteome project: current state and future direction Mol. Cell. Proteomics 10 2011 (M111.009993)
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Legrain, P.1
Aebersold, R.2
Archakov, A.3
Bairoch, A.4
Bala, K.5
Beretta, L.6
Bergeron, J.7
Borchers, C.H.8
Corthals, G.L.9
Costello, C.E.10
Deutsch, E.W.11
Domon, B.12
Hancock, W.13
He, F.14
Hochstrasser, D.15
Marko-Varga, G.16
Salekdeh, G.H.17
Sechi, S.18
Snyder, M.19
Srivastava, S.20
more..
-
2
-
-
84863229647
-
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
-
Y.-K. Paik, S.-K. Jeong, G.S. Omenn, M. Uhlen, S. Hanash, S.Y. Cho, H.-J. Lee, K. Na, E.-Y. Choi, F. Yan, F. Zhang, Y. Zhang, M. Snyder, Y. Cheng, R. Chen, G. Marko-Varga, E.W. Deutsch, H. Kim, J.-Y. Kwon, and R. Aebersold The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome Nat. Biotechnol. 30 2012 221 223
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 221-223
-
-
Paik, Y.-K.1
Jeong, S.-K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
Cho, S.Y.6
Lee, H.-J.7
Na, K.8
Choi, E.-Y.9
Yan, F.10
Zhang, F.11
Zhang, Y.12
Snyder, M.13
Cheng, Y.14
Chen, R.15
Marko-Varga, G.16
Deutsch, E.W.17
Kim, H.18
Kwon, J.-Y.19
Aebersold, R.20
more..
-
3
-
-
77949283665
-
Construction of protein semantic networks using PubMed/MEDLINE
-
E.A. Ponomarenko, A.V. Lisitsa, E.V. Il'gisonis, and A.I. Archakov Construction of protein semantic networks using PubMed/MEDLINE Mol. Biol. (Mosk) 44 1 2010 152 161
-
(2010)
Mol. Biol. (Mosk)
, vol.44
, Issue.1
, pp. 152-161
-
-
Ponomarenko, E.A.1
Lisitsa, A.V.2
Il'Gisonis, E.V.3
Archakov, A.I.4
-
4
-
-
84857963287
-
Antibody-based protein profiling of the human chromosome 21
-
(M111.013458)
-
M. Uhlén, P. Oksvold, C. Älgenäs, C. Hamsten, L. Fagerberg, D. Klevebring, E. Lundberg, J. Odeberg, F. Pontén, T. Kondo, and Å. Sivertsson Antibody-based protein profiling of the human chromosome 21 Mol. Cell. Proteomics 11 2012 (M111.013458)
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Uhlén, M.1
Oksvold, P.2
Älgenäs, C.3
Hamsten, C.4
Fagerberg, L.5
Klevebring, D.6
Lundberg, E.7
Odeberg, J.8
Pontén, F.9
Kondo, T.10
Sivertsson, Å.11
-
5
-
-
84890434430
-
-
http://www.c-hpp.org/
-
-
-
-
7
-
-
77956304093
-
Mass spectrometry in high-throughput proteomics: Ready for the big time
-
Tommy Nilsson, Matthias Mann, Ruedi Aebersold, John R. Yates, Amos Bairoch, and John J.M. Bergeron Mass spectrometry in high-throughput proteomics: ready for the big time Nat. Methods 7 9 September 2010 681 685
-
(2010)
Nat. Methods
, vol.7
, Issue.9
, pp. 681-685
-
-
Nilsson, T.1
Mann, M.2
Aebersold, R.3
Yates, J.R.4
Bairoch, A.5
Bergeron, J.J.M.6
-
8
-
-
84874047587
-
The proteome browser web portal
-
Robert J.A. Goode, Simon Yu, Anitha Kannan, Jeffrey H. Christiansen, Anthony Beitz, William S. Hancock, Edouard Nice, and A. Ian Smith The proteome browser web portal J. Proteome Res. 12 1 January 4 2013 172 178
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 172-178
-
-
Goode, R.J.A.1
Yu, S.2
Kannan, A.3
Christiansen, J.H.4
Beitz, A.5
Hancock, W.S.6
Nice, E.7
Smith, A.I.8
-
9
-
-
84874037105
-
CAPER: A Chromosome-assembled Human Proteome browsER
-
Feifei Guo, Dan Wang, Zhongyang Liu, Liang Lu, Wei Zhang, Haiyan Sun, and Hongxing Zhang CAPER: a Chromosome-assembled Human Proteome browsER J. Proteome Res. 12 1 January 4 2013 179 186
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 179-186
-
-
Guo, F.1
Wang, D.2
Liu, Z.3
Lu, L.4
Zhang, W.5
Sun, H.6
Zhang, H.7
-
10
-
-
84874085360
-
GenomewidePDB, a proteomic database exploring the comprehensive protein parts list and transcriptome landscape in human chromosomes
-
Seul-Ki Jeong, Hyoung-Joo Lee, Keun Na, Jin-Young Cho, Min Jung Lee, Ja-Young Kwon, and Hoguen Kim GenomewidePDB, a proteomic database exploring the comprehensive protein parts list and transcriptome landscape in human chromosomes J. Proteome Res. 12 1 January 4 2013 106 111
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 106-111
-
-
Jeong, S.-K.1
Lee, H.-J.2
Na, K.3
Cho, J.-Y.4
Jung Lee, M.5
Kwon, J.-Y.6
Kim, H.7
-
11
-
-
48249136122
-
Integrating biological data - The distributed annotation system
-
Andrew M. Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D. Finn, and Henning Hermjakob Integrating biological data - the distributed annotation system BMC Bioinforma. 9 Suppl. 8 January 2008 S3
-
(2008)
BMC Bioinforma.
, vol.9
, Issue.SUPPL. 8
, pp. 3
-
-
Jenkinson, A.M.1
Albrecht, M.2
Birney, E.3
Blankenburg, H.4
Down, T.5
Finn, R.D.6
Hermjakob, H.7
-
12
-
-
84867754221
-
The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways
-
Julia M. Burkhart, Marc Vaudel, Stepan Gambaryan, Sonja Radau, Ulrich Walter, Lennart Martens, Jörg Geiger, Albert Sickmann, and René P. Zahedi The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways Blood 120 15 October 11 2012 e73 e82
-
(2012)
Blood
, vol.120
, Issue.15
-
-
Burkhart, J.M.1
Vaudel, M.2
Gambaryan, S.3
Radau, S.4
Walter, U.5
Martens, L.6
Geiger, J.7
Sickmann, A.8
Zahedi, R.P.9
-
13
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
D.M. Muzny, M.N. Bainbridge, K. Chang, H.H. Dinh, and J.A. Drummond Comprehensive molecular characterization of human colon and rectal cancer Nature 487 2012 330 337
-
(2012)
Nature
, vol.487
, pp. 330-337
-
-
Muzny, D.M.1
Bainbridge, M.N.2
Chang, K.3
Dinh, H.H.4
Drummond, J.A.5
-
14
-
-
75549089545
-
The Proteomics Identifications database: 2010 update
-
J.A. Vizcaíno, R. Côté, F. Reisinger, H. Barsnes, J.M. Foster, J. Rameseder, H. Hermjakob, and L. Martens The Proteomics Identifications database: 2010 update Nucleic Acids Res. 38 2010 D736 D742
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Vizcaíno, J.A.1
Côté, R.2
Reisinger, F.3
Barsnes, H.4
Foster, J.M.5
Rameseder, J.6
Hermjakob, H.7
Martens, L.8
-
15
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
R. Craig, J.P. Cortens, and R.C. Beavis Open source system for analyzing, validating, and storing protein identification data J. Proteome Res. 3 2004 1234 1242
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
16
-
-
84876515907
-
STRING V9.1: Protein-protein interaction networks, with increased coverage and integration
-
(Database issue)
-
Andrea Franceschini, Damian Szklarczyk, Sune Frankild, Michael Kuhn, Milan Simonovic, Alexander Roth, and Jianyi Lin STRING V9.1: protein-protein interaction networks, with increased coverage and integration Nucleic Acids Res. 41 January 2013 D808 D815 (Database issue)
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
-
17
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
R. Apweiler, M. Jesus Martin, C. O'onovan, M. Magrane, and Y. Alam-Faruque Reorganizing the protein space at the Universal Protein Resource (UniProt) Nucleic Acids Res. 40 2011 D71 D75
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Apweiler, R.1
Jesus Martin, M.2
O'Onovan, C.3
Magrane, M.4
Alam-Faruque, Y.5
-
18
-
-
84862187489
-
NeXtProt: A knowledge platform for human proteins
-
L. Lane, G. Argoud-Puy, A. Britan, I. Cusin, P.D. Duek, O. Evalet, A. Gateau, P. Gaudet, A. Gleizes, A. Masselot, C. Zwahlen, and A. Bairoch neXtProt: a knowledge platform for human proteins Nucleic Acids Res. 40 2012 76 83
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 76-83
-
-
Lane, L.1
Argoud-Puy, G.2
Britan, A.3
Cusin, I.4
Duek, P.D.5
Evalet, O.6
Gateau, A.7
Gaudet, P.8
Gleizes, A.9
Masselot, A.10
Zwahlen, C.11
Bairoch, A.12
-
19
-
-
84859622404
-
Standard guidelines for the chromosome-centric human proteome project
-
Y.-K. Paik, G.S. Omenn, M. Uhlen, S. Hanash, G. Marko-Varga, R. Aebersold, A. Bairoch, T. Yamamoto, P. Legrain, H.-J. Lee, K. Na, S.-K. Jeong, F. He, P.-A. Binz, T. Nishimura, P. Keown, M.S. Baker, J.S. Yoo, J. Garin, and A. Archakov Standard guidelines for the chromosome-centric human proteome project J. Proteome Res. 11 2012 2005 2013
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2005-2013
-
-
Paik, Y.-K.1
Omenn, G.S.2
Uhlen, M.3
Hanash, S.4
Marko-Varga, G.5
Aebersold, R.6
Bairoch, A.7
Yamamoto, T.8
Legrain, P.9
Lee, H.-J.10
Na, K.11
Jeong, S.-K.12
He, F.13
Binz, P.-A.14
Nishimura, T.15
Keown, P.16
Baker, M.S.17
Yoo, J.S.18
Garin, J.19
Archakov, A.20
more..
-
20
-
-
84857938446
-
Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins
-
(M111.014050)
-
T. Geiger, A. Wehner, C. Schaab, J. Cox, and M. Mann Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins Mol. Cell. Proteomics 11 3 2012 (M111.014050)
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.3
-
-
Geiger, T.1
Wehner, A.2
Schaab, C.3
Cox, J.4
Mann, M.5
-
21
-
-
38349133054
-
THE HUPO Human Plasma Proteome Project
-
10.1002/prca.200700369 (Epub)
-
G.S. Omenn THE HUPO Human Plasma Proteome Project Proteomics Clin. Appl. 1 8 Jul 13 2007 769 779 10.1002/prca.200700369 (Epub)
-
(2007)
Proteomics Clin. Appl.
, vol.1
, Issue.8
, pp. 769-779
-
-
Omenn, G.S.1
-
22
-
-
84861859517
-
ENCODE whole-genome data in the UCSC Genome Browser: Update 2012
-
(Database issue)
-
Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, and Melissa S. Cline ENCODE whole-genome data in the UCSC Genome Browser: update 2012 Nucleic Acids Res. 40 January 2012 D912 D917 (Database issue)
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Rosenbloom, K.R.1
Dreszer, T.R.2
Long, J.C.3
Malladi, V.S.4
Sloan, C.A.5
Raney, B.J.6
Cline, M.S.7
-
23
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
D.M. Muzny, M.N. Bainbridge, K. Chang, H.H. Dinh, and J.A. Drummond Comprehensive molecular characterization of human colon and rectal cancer Nature 487 7407 July 19 2012 330 337
-
(2012)
Nature
, vol.487
, Issue.7407
, pp. 330-337
-
-
Muzny, D.M.1
Bainbridge, M.N.2
Chang, K.3
Dinh, H.H.4
Drummond, J.A.5
-
24
-
-
43049127826
-
PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
-
E.W. Deutsch, H. Lam, and R. Aebersold PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows EMBO Rep. 9 2008 429 434
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
25
-
-
23944492134
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
G.S. Omenn, D.J. States, M. Adamski, T.W. Blackwell, R. Menon, H. Hermjakob, R. Apweiler, B.B. Haab, R.J. Simpson, J.S. Eddes, and E.A. Kapp Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database Proteomics 5 13 2005 3226 3245
-
(2005)
Proteomics
, vol.5
, Issue.13
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
Blackwell, T.W.4
Menon, R.5
Hermjakob, H.6
Apweiler, R.7
Haab, B.B.8
Simpson, R.J.9
Eddes, J.S.10
Kapp, E.A.11
-
26
-
-
84859740873
-
RNA-Seq Atlas - A reference database for gene expression profiling in normal tissue by next-generation sequencing
-
M. Krupp, J.U. Marquardt, U. Sahin, P.R. Galle, J. Castle, and A. Teufel RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing Bioinformatics 28 2012 1184 1185
-
(2012)
Bioinformatics
, vol.28
, pp. 1184-1185
-
-
Krupp, M.1
Marquardt, J.U.2
Sahin, U.3
Galle, P.R.4
Castle, J.5
Teufel, A.6
-
27
-
-
78049480691
-
GeneCards Version 3: The human gene integrator
-
M. Safran, I. Dalah, J. Alexander, N. Rosen, T. Iny Stein, M. Shmoish, N. Nativ, I. Bahir, T. Doniger, H. Krug, A. Sirota-Madi, T. Olender, Y. Golan, G. Stelzer, A. Harel, and D. Lancet GeneCards Version 3: the human gene integrator Database 2010 2010 baq020
-
(2010)
Database
, vol.2010
, pp. 020
-
-
Safran, M.1
Dalah, I.2
Alexander, J.3
Rosen, N.4
Iny Stein, T.5
Shmoish, M.6
Nativ, N.7
Bahir, I.8
Doniger, T.9
Krug, H.10
Sirota-Madi, A.11
Olender, T.12
Golan, Y.13
Stelzer, G.14
Harel, A.15
Lancet, D.16
-
28
-
-
78650034777
-
Towards a knowledge-based human protein atlas
-
Mathias Uhlen, Per Oksvold, Linn Fagerberg, Emma Lundberg, Kalle Jonasson, Mattias Forsberg, and Martin Zwahlen Towards a knowledge-based human protein atlas Nat. Biotechnol. 28 12 December 2010 1248 1250
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.12
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
Zwahlen, M.7
-
29
-
-
84857980282
-
Analysis of high accuracy, quantitative proteomics data in the MaxQB database
-
(M111.014068)
-
C. Schaab, T. Geiger, G. Stoehr, J. Cox, and M. Mann Analysis of high accuracy, quantitative proteomics data in the MaxQB database Mol. Cell. Proteomics 11 3 2012 (M111.014068)
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.3
-
-
Schaab, C.1
Geiger, T.2
Stoehr, G.3
Cox, J.4
Mann, M.5
-
30
-
-
84874089699
-
Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells
-
Victor G. Zgoda, Arthur T. Kopylov, Olga V. Tikhonova, Alexander A. Moisa, Nadezhda V. Pyndyk, Tatyana E. Farafonova, and Svetlana E. Novikova Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells J. Proteome Res. 12 1 January 4 2013 123 134
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 123-134
-
-
Zgoda, V.G.1
Kopylov, A.T.2
Tikhonova, O.V.3
Moisa, A.A.4
Pyndyk, N.V.5
Farafonova, T.E.6
Novikova, S.E.7
|