Flexible and accessible workflows for improved proteogenomic analysis using the galaxy framework

Journal of Proteome Research

Volumn 13, Issue 12, 2014, Pages 5898-5908

  Jagtap, Pratik D ^a   Johnson, James E ^a   Onsongo, Getiria ^a   Sadler, Fredrik W ^b   Murray, Kevin ^a   Wang, Yuanbo ^c   Shenykman, Gloria M ^d   Bandhakavi, Sricharan ^e   Smith, Lloyd M ^d   Griffin, Timothy J ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b ST OLAF COLLEGE   (United States)

^c CARLETON COLLEGE   (United States)

^d UNIVERSITY OF WISCONSIN MADISON   (United States)

^e BIO RAD LABORATORIES   (United States)

Author keywords

customized database generation; peptide corresponding to a novel proteoform; peptide spectral match evaluation; proteogenomics; salivary proteins; workflows

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; DNA SEQUENCE; GENOMICS; HUMAN; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEOGENOMIC; PROTEOMICS; RNA SEQUENCE; SALIVA ANALYSIS; GENE LIBRARY; GENETICS; METABOLISM; NUCLEOTIDE SEQUENCE; SALIVA;

COMPLEMENTARY DNA; PROTEOME;

DNA, COMPLEMENTARY; GENE LIBRARY; HUMANS; PROTEOME; PROTEOMICS; READING FRAMES; SALIVA; SOFTWARE;

EID: 84915751047     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr500812t     Document Type: Article

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