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Volumn 3, Issue 10, 2013, Pages 1108-1112

Connecting genomic alterations to cancer biology with proteomics: The NCI clinical proteomic tumor analysis consortium

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; PHOSPHOPROTEIN; PROTEOME; TUMOR PROTEIN;

EID: 84885647278     PISSN: 21598274     EISSN: 21598290     Source Type: Journal    
DOI: 10.1158/2159-8290.CD-13-0219     Document Type: Article
Times cited : (229)

References (20)
  • 1
    • 84872847361 scopus 로고    scopus 로고
    • The genomic landscape of breast cancer as a therapeutic roadmap
    • Ellis MJ, Perou CM. The genomic landscape of breast cancer as a therapeutic roadmap. Cancer Discov 2013; 3: 27-34.
    • (2013) Cancer Discov , vol.3 , pp. 27-34
    • Ellis, M.J.1    Perou, C.M.2
  • 2
    • 84879469711 scopus 로고    scopus 로고
    • Molecular pathways: Extracting medical knowledge from high-throughput genomic data
    • Goldstein TC, Paull EO, Ellis MJ, Stuart JM. Molecular pathways: extracting medical knowledge from high-throughput genomic data. Clin Cancer Res 2013; 19: 3114-20.
    • (2013) Clin Cancer Res , vol.19 , pp. 3114-3120
    • Goldstein, T.C.1    Paull, E.O.2    Ellis, M.J.3    Stuart, J.M.4
  • 3
    • 84861990380 scopus 로고    scopus 로고
    • Selected reaction monitoring-based proteomics: Workfl ows, potential, pitfalls and future directions
    • Picotti P, Aebersold R. Selected reaction monitoring-based proteomics: workfl ows, potential, pitfalls and future directions. Nat Methods 2012; 9: 555-66.
    • (2012) Nat Methods , vol.9 , pp. 555-566
    • Picotti, P.1    Aebersold, R.2
  • 4
    • 84871983086 scopus 로고    scopus 로고
    • Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry
    • Gillette MA, Carr SA. Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry. Nat Methods 2013; 10: 28-34.
    • (2013) Nat Methods , vol.10 , pp. 28-34
    • Gillette, M.A.1    Carr, S.A.2
  • 5
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network
    • Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumours. Nature 2012; 490: 61-70.
    • (2012) Nature , vol.490 , pp. 61-70
  • 7
    • 67650564834 scopus 로고    scopus 로고
    • Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
    • Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat Biotechnol 2009; 27: 633-41.
    • (2009) Nat Biotechnol , vol.27 , pp. 633-641
    • Addona, T.A.1    Abbatiello, S.E.2    Schilling, B.3    Skates, S.J.4    Mani, D.R.5    Bunk, D.M.6
  • 8
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, Frewen B, et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010; 26: 966-8.
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • Maclean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4    Finney, G.L.5    Frewen, B.6
  • 9
    • 84862333720 scopus 로고    scopus 로고
    • ITRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics
    • M111 014423
    • Mertins P, Udeshi ND, Clauser KR, Mani DR, Patel J, Ong SE, et al. iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics. Mol Cell Proteomics 2012; 11: M111 014423.
    • (2012) Mol Cell Proteomics , vol.11
    • Mertins, P.1    Udeshi, N.D.2    Clauser, K.R.3    Mani, D.R.4    Patel, J.5    Ong, S.E.6
  • 10
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu H, Sadygov RG, Yates JR. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 2004; 76: 4193-201.
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates, J.R.3
  • 11
    • 84863393526 scopus 로고    scopus 로고
    • Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes
    • O111 013698
    • Michalski A, Damoc E, Lange O, Denisov E, Nolting D, Muller M, et al. Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes. Mol Cell Proteomics 2012; 11: O111 013698.
    • (2012) Mol Cell Proteomics , vol.11
    • Michalski, A.1    Damoc, E.2    Lange, O.3    Denisov, E.4    Nolting, D.5    Muller, M.6
  • 13
    • 34250722602 scopus 로고    scopus 로고
    • Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
    • Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc Natl Acad Sci U S A 2007; 104: 5860-5.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 5860-5865
    • Wolf-Yadlin, A.1    Hautaniemi, S.2    Lauffenburger, D.A.3    White, F.M.4
  • 14
    • 79951521007 scopus 로고    scopus 로고
    • Mass spectrometry mapping of epidermal growth factor receptor phosphorylation related to oncogenic mutations and tyrosine kinase inhibitor sensitivity
    • Zhang G, Fang B, Liu RZ, Lin H, Kinose F, Bai Y, et al. Mass spectrometry mapping of epidermal growth factor receptor phosphorylation related to oncogenic mutations and tyrosine kinase inhibitor sensitivity. J Proteome Res 2011; 10: 305-19.
    • (2011) J Proteome Res , vol.10 , pp. 305-319
    • Zhang, G.1    Fang, B.2    Liu, R.Z.3    Lin, H.4    Kinose, F.5    Bai, Y.6
  • 15
    • 84861158485 scopus 로고    scopus 로고
    • Phosphoproteomics identifies driver tyrosine kinases in sarcoma cell lines and tumors
    • Bai Y, Li J, Fang B, Edwards A, Zhang G, Bui M, et al. Phosphoproteomics identifies driver tyrosine kinases in sarcoma cell lines and tumors. Cancer Res 2012; 72: 2501-11.
    • (2012) Cancer Res , vol.72 , pp. 2501-2511
    • Bai, Y.1    Li, J.2    Fang, B.3    Edwards, A.4    Zhang, G.5    Bui, M.6
  • 16
    • 84863611387 scopus 로고    scopus 로고
    • GeLC-MRM quantitation of mutant KRAS oncoprotein in complex biological samples
    • Halvey PJ, Ferrone CR, Liebler DC. GeLC-MRM quantitation of mutant KRAS oncoprotein in complex biological samples. J Proteome Res 2012; 11: 3908-13.
    • (2012) J Proteome Res , vol.11 , pp. 3908-3913
    • Halvey, P.J.1    Ferrone, C.R.2    Liebler, D.C.3
  • 17
    • 77955456065 scopus 로고    scopus 로고
    • Quantification of beta-catenin signaling components in colon cancer cell lines, tissue sections, and microdissected tumor cells using reaction monitoring mass spectrometry
    • Chen Y, Gruidl M, Remily-Wood E, Liu RZ, Eschrich S, Lloyd M, et al. Quantification of beta-catenin signaling components in colon cancer cell lines, tissue sections, and microdissected tumor cells using reaction monitoring mass spectrometry. J Proteome Res 2010; 9: 4215-27.
    • (2010) J Proteome Res , vol.9 , pp. 4215-4227
    • Chen, Y.1    Gruidl, M.2    Remily-Wood, E.3    Liu, R.Z.4    Eschrich, S.5    Lloyd, M.6
  • 18
    • 84870923756 scopus 로고    scopus 로고
    • High-throughput SISCAPA quantitation of peptides from human plasma digests by ultrafast, liquid chromatography-free mass spectrometry
    • Razavi M, Frick LE, LaMarr WA, Pope ME, Miller CA, Anderson NL, et al. High-throughput SISCAPA quantitation of peptides from human plasma digests by ultrafast, liquid chromatography-free mass spectrometry. J Proteome Res 2012; 11: 5642-9.
    • (2012) J Proteome Res , vol.11 , pp. 5642-5649
    • Razavi, M.1    Frick, L.E.2    Lamarr, W.A.3    Pope, M.E.4    Miller, C.A.5    Anderson, N.L.6
  • 19
    • 84866538934 scopus 로고    scopus 로고
    • Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
    • Shi T, Fillmore TL, Sun X, Zhao R, Schepmoes AA, Hossain M, et al. Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum. Proc Natl Acad Sci U S A 2012; 109: 15395-400.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 15395-15400
    • Shi, T.1    Fillmore, T.L.2    Sun, X.3    Zhao, R.4    Schepmoes, A.A.5    Hossain, M.6
  • 20
    • 84880063582 scopus 로고    scopus 로고
    • Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation
    • Liu Q, Halvey PJ, Shyr Y, Slebos RJ, Liebler DC, Zhang B. Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation. Mol Cell Proteomics 2013; 12: 1900-11.
    • (2013) Mol Cell Proteomics , vol.12 , pp. 1900-1911
    • Liu, Q.1    Halvey, P.J.2    Shyr, Y.3    Slebos, R.J.4    Liebler, D.C.5    Zhang, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.