-
1
-
-
20144381803
-
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
-
Desiere, F.; Deutsch, E. W.; Nesvizhskii, A. I.; Mallick, P.; King, N. L.; Eng, J. K.; Aderem, A.; Boyle, R.; Brunner, E.; Donohoe, S.; et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol. 2005, 6, R9.
-
(2005)
Genome Biol.
, vol.6
-
-
Desiere, F.1
Deutsch, E.W.2
Nesvizhskii, A.I.3
Mallick, P.4
King, N.L.5
Eng, J.K.6
Aderem, A.7
Boyle, R.8
Brunner, E.9
Donohoe, S.10
-
2
-
-
53549100731
-
Use of shotgun proteomics for the identification, confirmation, and correction of C
-
Merrihew, G. E.; Davis, C.; Ewing, B.; Williams, G.; Ka?ll, L.; Frewen, B. E.; Noble, W. S.; Green, P.; Thomas, J. H.; MacCoss, M. J. Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. Genome Res. 2008, 18, 1660-1669.
-
(2008)
Elegans Gene Annotations. Genome Res.
, vol.18
, pp. 1660-1669
-
-
Merrihew, G.E.1
Davis, C.2
Ewing, B.3
Williams, G.4
Kall, L.5
Frewen, B.E.6
Noble, W.S.7
Green, P.8
Thomas, J.H.9
MacCoss, M.J.10
-
3
-
-
43049127826
-
PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
-
Deutsch, E. W.; Lam, H.; Aebersold, R. PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 2008, 9, 429-434.
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
4
-
-
58149202157
-
Human Proteinpedia: A unified discovery resource for proteomics research
-
Kandasamy, K.; Keerthikumar, S.; Goel, R.; Mathivanan, S.; Patankar, N.; Shafreen, B.; Renuse, S.; Pawar, H.; Ramachandra, Y. L.; Acharya, P. K.; et al. Human Proteinpedia: a unified discovery resource for proteomics research. Nucleic Acids Res. 2009, 37, D773-781.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kandasamy, K.1
Keerthikumar, S.2
Goel, R.3
Mathivanan, S.4
Patankar, N.5
Shafreen, B.6
Renuse, S.7
Pawar, H.8
Ramachandra, Y.L.9
Acharya, P.K.10
-
5
-
-
75549089545
-
The Proteomics Identifications database: 2010 update
-
Vizcaíno, J. A.; Co?te?, R.; Reisinger, F.; Barsnes, H.; Foster, J. M.; Rameseder, J.; Hermjakob, H.; Martens, L. The Proteomics Identifications database: 2010 update. Nucleic Acids Res. 2010, 38, D736-742.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Vizcaíno, J.A.1
Cote, R.2
Reisinger, F.3
Barsnes, H.4
Foster, J.M.5
Rameseder, J.6
Hermjakob, H.7
Martens, L.8
-
6
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
Craig, R.; Cortens, J. P.; Beavis, R. C. Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004, 3, 1234-1242.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
7
-
-
84863229647
-
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
-
Paik, Y.-K.; Jeong, S.-K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Cho, S. Y.; Lee, H.-J.; Na, K.; Choi, E.-Y.; Yan, F.; et al. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nat. Biotechnol. 2012, 30, 221-223.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 221-223
-
-
Paik, Y.-K.1
Jeong, S.-K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
Cho, S.Y.6
Lee, H.-J.7
Na, K.8
Choi, E.-Y.9
Yan, F.10
-
8
-
-
59849094522
-
Understanding genome browsing
-
Cline, M. S.; Kent, W. J. Understanding genome browsing. Nat. Biotechnol. 2009, 27, 153-155.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 153-155
-
-
Cline, M.S.1
Kent, W.J.2
-
9
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L. D.; Mungall, C.; Shu, S.; Caudy, M.; Mangone, M.; Day, A.; Nickerson, E.; Stajich, J. E.; Harris, T. W.; Arva, A.; Lewis, S. The generic genome browser: a building block for a model organism system database. Genome Res. 2002, 12, 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
10
-
-
84858221706
-
Ensembl 2012
-
Flicek, P.; Amode, M. R.; Barrell, D.; Beal, K.; Brent, S.; Carvalho-Silva, D.; Clapham, P.; Coates, G.; Fairley, S.; Fitzgerald, S.; et al. Ensembl 2012. Nucleic Acids Res. 2012, 40, D84-90.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
11
-
-
78651320424
-
The UCSC Genome Browser database: Update 2011
-
Fujita, P. A.; Rhead, B.; Zweig, A. S.; Hinrichs, A. S.; Karolchik, D.; Cline, M. S.; Goldman, M.; Barber, G. P.; Clawson, H.; Coelho, A.; et al. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 2011, 39, D876-882.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
Cline, M.S.6
Goldman, M.7
Barber, G.P.8
Clawson, H.9
Coelho, A.10
-
12
-
-
84862187489
-
NeXtProt: A knowledge platform for human proteins
-
Lane, L.; Argoud-Puy, G.; Britan, A.; Cusin, I.; Duek, P. D.; Evalet, O.; Gateau, A.; Gaudet, P.; Gleizes, A.; Masselot, A.; Zwahlen, C.; Bairoch, A. neXtProt: a knowledge platform for human proteins. Nucleic Acids Res. 2012, 40, D76-83.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Lane, L.1
Argoud-Puy, G.2
Britan, A.3
Cusin, I.4
Duek, P.D.5
Evalet, O.6
Gateau, A.7
Gaudet, P.8
Gleizes, A.9
Masselot, A.10
Zwahlen, C.11
Bairoch, A.12
-
13
-
-
78650034777
-
Towards a knowledge-based Human Protein Atlas
-
Uhlen, M.; Oksvold, P.; Fagerberg, L.; Lundberg, E.; Jonasson, K.; Forsberg, M.; Zwahlen, M.; Kampf, C.; Wester, K.; Hober, S.; et al. Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol. 2010, 28, 1248-1250.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
Zwahlen, M.7
Kampf, C.8
Wester, K.9
Hober, S.10
-
14
-
-
73649104821
-
First insight into the human liver proteome from PROTEOME(SKY)-LIVER(Hu) 1.0, a publicly available database
-
Chinese Human Liver Proteome Profiling Consortium.
-
Chinese Human Liver Proteome Profiling Consortium. First insight into the human liver proteome from PROTEOME(SKY)-LIVER(Hu) 1.0, a publicly available database. J. Proteome Res. 2010, 9, 79-94.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 79-94
-
-
-
15
-
-
58149189856
-
McKusick's Online Mendelian Inheritance in Man (OMIM)
-
Amberger, J.; Bocchini, C. A.; Scott, A. F.; Hamosh, A. McKusick's Online Mendelian Inheritance in Man (OMIM). Nucleic Acids Res. 2009, 37, D793-796.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Amberger, J.1
Bocchini, C.A.2
Scott, A.F.3
Hamosh, A.4
-
16
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modified proteome
-
Kim, W.; Bennett, E. J.; Huttlin, E. L.; Guo, A.; Li, J.; Possemato, A.; Sowa, M. E.; Rad, R.; Rush, J.; Comb, M. J.; et al. Systematic and quantitative assessment of the ubiquitin-modified proteome. Mol. Cell 2011, 44, 325-340.
-
(2011)
Mol. Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
Guo, A.4
Li, J.5
Possemato, A.6
Sowa, M.E.7
Rad, R.8
Rush, J.9
Comb, M.J.10
-
17
-
-
33749257546
-
A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology
-
Ying, W.; Jiang, Y.; Guo, L.; Hao, Y.; Zhang, Y.; Wu, S.; Zhong, F.; Wang, J.; Shi, R.; Li, D.; et al. A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology. Mol. Cell Proteomics 2006, 5, 1703-1707.
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 1703-1707
-
-
Ying, W.1
Jiang, Y.2
Guo, L.3
Hao, Y.4
Zhang, Y.5
Wu, S.6
Zhong, F.7
Wang, J.8
Shi, R.9
Li, D.10
-
18
-
-
80054083642
-
Toward an understanding of the protein interaction network of the human liver
-
Wang, J.; Huo, K.; Ma, L.; Tang, L.; Li, D.; Huang, X.; Yuan, Y.; Li, C.; Wang, W.; Guan, W.; et al. Toward an understanding of the protein interaction network of the human liver. Mol. Syst. Biol. 2011, 7, 536.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 536
-
-
Wang, J.1
Huo, K.2
Ma, L.3
Tang, L.4
Li, D.5
Huang, X.6
Yuan, Y.7
Li, C.8
Wang, W.9
Guan, W.10
-
19
-
-
77149148756
-
Regulation of cellular metabolism by protein lysine acetylation
-
Zhao, S.; Xu, W.; Jiang, W.; Yu, W.; Lin, Y.; Zhang, T.; Yao, J.; Zhou, L.; Zeng, Y.; Li, H.; et al. Regulation of cellular metabolism by protein lysine acetylation. Science 2010, 327, 1000-1004.
-
(2010)
Science
, vol.327
, pp. 1000-1004
-
-
Zhao, S.1
Xu, W.2
Jiang, W.3
Yu, W.4
Lin, Y.5
Zhang, T.6
Yao, J.7
Zhou, L.8
Zeng, Y.9
Li, H.10
-
20
-
-
77949686964
-
Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis
-
Han, G.; Ye, M.; Liu, H.; Song, C.; Sun, D.; Wu, Y.; Jiang, X.; Chen, R.; Wang, C.; Wang, L.; Zou, H. Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis. Electrophoresis 2010, 31, 1080-1089.
-
(2010)
Electrophoresis
, vol.31
, pp. 1080-1089
-
-
Han, G.1
Ye, M.2
Liu, H.3
Song, C.4
Sun, D.5
Wu, Y.6
Jiang, X.7
Chen, R.8
Wang, C.9
Wang, L.10
Zou, H.11
-
21
-
-
69749083447
-
Browse: A next-generation genome browser
-
Skinner, M. E.; Uzilov, A. V.; Stein, L. D.; Mungall, C. J.; Holmes, I. H. JBrowse: a next-generation genome browser. Genome Res. 2009, 19, 1630-1638.
-
(2009)
Genome Res.
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
22
-
-
84874036973
-
-
Visualization: Table-Google Chart Tools Google Developers (accessed July 10, 2012).
-
Visualization: Table-Google Chart Tools Google Developers https://developers.google.com/chart/interactive/docs/gallery/table (accessed July 10, 2012).
-
-
-
-
23
-
-
79551549643
-
Comprehensive proteomics
-
Beck, M.; Claassen, M.; Aebersold, R. Comprehensive proteomics. Curr. Opin. Biotechnol. 2011, 22, 3-8.
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 3-8
-
-
Beck, M.1
Claassen, M.2
Aebersold, R.3
-
24
-
-
80054752352
-
Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches
-
Hause, R. J.; Kim, H.-D.; Leung, K. K.; Jones, R. B. Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches. Expert Rev. Proteomics 2011, 8, 565-575.
-
(2011)
Expert Rev. Proteomics
, vol.8
, pp. 565-575
-
-
Hause, R.J.1
Kim, H.-D.2
Leung, K.K.3
Jones, R.B.4
-
25
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
De Godoy, L. M. F.; Olsen, J. V.; Cox, J.; Nielsen, M. L.; Hubner, N. C.; Fro?hlich, F.; Walther, T. C.; Mann, M. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455, 1251-1254.
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy, L.M.F.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Frohlich, F.6
Walther, T.C.7
Mann, M.8
|