-
1
-
-
79953304894
-
Multiplexed shotgun genotyping for rapid and efficient genetic mapping
-
Andolfatto P, Davison D, Erezyilmaz D, et al,. (2011) Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Genome Research, 21, 610-617.
-
(2011)
Genome Research
, vol.21
, pp. 610-617
-
-
Andolfatto, P.1
Davison, D.2
Erezyilmaz, D.3
-
3
-
-
0028794523
-
Molecular and morphological evolution in south Pacific scincid lizards: Morphological conservatism and phylogenetic relationships of Papuan Lipinia
-
Austin CC, (1995) Molecular and morphological evolution in south Pacific scincid lizards: morphological conservatism and phylogenetic relationships of Papuan Lipinia. Herpetologica, 51, 291-300.
-
(1995)
Herpetologica
, vol.51
, pp. 291-300
-
-
Austin, C.C.1
-
4
-
-
84888824954
-
The challenge of species delimitation at the extremes: Diversification without morphological change in Philippine sun skinks
-
Barley AJ, White J, Diesmos AC, Brown RM, (2013) The challenge of species delimitation at the extremes: diversification without morphological change in Philippine sun skinks. Evolution, 67, 3556-3572.
-
(2013)
Evolution
, vol.67
, pp. 3556-3572
-
-
Barley, A.J.1
White, J.2
Diesmos, A.C.3
Brown, R.M.4
-
5
-
-
84916241504
-
Lme4: Linear mixed-effects models using Eigen and S4
-
Accessed January 15, 2014
-
Bates D, Maechler M, Bolker B, Walker S, (2014) lme4: Linear mixed-effects models using Eigen and S4. R package version 1.0-6. Available: http://CRAN.R-project.org/package=fields. Accessed January 15, 2014.
-
(2014)
R Package Version 1.0-6
-
-
Bates, D.1
Maechler, M.2
Bolker, B.3
Walker, S.4
-
6
-
-
84886235499
-
Disentangling the effects of geographic and ecological isolation on genetic differentiation
-
Bradburd GS, Ralph PL, Coop GM, (2013) Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution, 67, 3258-3273.
-
(2013)
Evolution
, vol.67
, pp. 3258-3273
-
-
Bradburd, G.S.1
Ralph, P.L.2
Coop, G.M.3
-
7
-
-
47749133826
-
Rates and patterns in the evolution of snake-like body form in squamate reptiles: Evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms
-
Brandley MC, Huelsenbeck JP, Wiens JJ, (2008) Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms. Evolution, 62, 2042-2064.
-
(2008)
Evolution
, vol.62
, pp. 2042-2064
-
-
Brandley, M.C.1
Huelsenbeck, J.P.2
Wiens, J.J.3
-
8
-
-
79955657273
-
ST in evolutionary and conservation biology
-
ST in evolutionary and conservation biology. Journal of Evolutionary Biology, 24, 1160-1168.
-
(2011)
Journal of Evolutionary Biology
, vol.24
, pp. 1160-1168
-
-
Brommer, J.E.1
-
10
-
-
70349849206
-
Philippines, biology
-
(eds Gillespie R.G. Clague D.A.), University of California Press, Berkeley, CA
-
Brown RM, Diesmos AC, (2009) Philippines, biology. In: Encyclopedis of islands (eds, Gillespie RG, Clague DA,), pp. 723-732. University of California Press, Berkeley, CA.
-
(2009)
Encyclopedis of Islands
, pp. 723-732
-
-
Brown, R.M.1
Diesmos, A.C.2
-
11
-
-
0036657015
-
Phylogenetic systematics of the Rana signata complex of Philippine and Bornean strea, frogs: Reconsideration of Huxley's modification of Wallace's Line at the Oriental-Australian faunal zone interface
-
Brown RM, Guttman SI, (2002) Phylogenetic systematics of the Rana signata complex of Philippine and Bornean strea, frogs: reconsideration of Huxley's modification of Wallace's Line at the Oriental-Australian faunal zone interface. Biological Journal of the Linnean Society, 76, 393-461.
-
(2002)
Biological Journal of the Linnean Society
, vol.76
, pp. 393-461
-
-
Brown, R.M.1
Guttman, S.I.2
-
12
-
-
84890309751
-
Spotted stream frog diversification at the Australasian faunal zone interface, mainland versus island comparisons, and a test of the Philippine 'dual-umbilicus' hypothesis
-
Brown RM, Siler CD, (2013) Spotted stream frog diversification at the Australasian faunal zone interface, mainland versus island comparisons, and a test of the Philippine 'dual-umbilicus' hypothesis. Journal of Biogeography, 41, 182-195.
-
(2013)
Journal of Biogeography
, vol.41
, pp. 182-195
-
-
Brown, R.M.1
Siler, C.D.2
-
13
-
-
77958165782
-
Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: Evidence for recent human-mediated range expansion?
-
Brown RM, Linkem CW, Siler CD, et al,. (2010) Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: evidence for recent human-mediated range expansion? Molecular Phylogenetics and Evolution, 57, 598-619.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.57
, pp. 598-619
-
-
Brown, R.M.1
Linkem, C.W.2
Siler, C.D.3
-
14
-
-
84888412713
-
Evolutionary processes of diversification in a model island archipelago
-
Brown RM, Siler CD, Oliveros CH, et al,. (2013) Evolutionary processes of diversification in a model island archipelago. Annual Review of Ecology, Evolution, and Systematics, 44, 1-24.
-
(2013)
Annual Review of Ecology, Evolution, and Systematics
, vol.44
, pp. 1-24
-
-
Brown, R.M.1
Siler, C.D.2
Oliveros, C.H.3
-
15
-
-
0030055568
-
Morphological and genetic evolution appear decoupled in Pacific skinks (Squamata: Scincidae: Emoia)
-
Bruna EM, Fisher RN, Case TJ, (1996) Morphological and genetic evolution appear decoupled in Pacific skinks (Squamata: Scincidae: Emoia). Proceedings of the Royal Society London B: Biological Sciences, 263, 681-688.
-
(1996)
Proceedings of the Royal Society London B: Biological Sciences
, vol.263
, pp. 681-688
-
-
Bruna, E.M.1
Fisher, R.N.2
Case, T.J.3
-
16
-
-
67650480071
-
The current refugial rainforests of Sundaland are unrepresentative of their biogeographic past and highly vulnerable to disturbance
-
Cannon CH, Morley RJ, Bush ABG, (2009) The current refugial rainforests of Sundaland are unrepresentative of their biogeographic past and highly vulnerable to disturbance. Proceedings of the National Academy of Sciences, 106, 11188-11193.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 11188-11193
-
-
Cannon, C.H.1
Morley, R.J.2
Bush, A.B.G.3
-
17
-
-
0013946171
-
The biota of long-distance dispersal. I. Principles of dispersal and evolution
-
Carlquist S, (1966) The biota of long-distance dispersal. I. Principles of dispersal and evolution. Quarterly Review of Biology, 41, 247-270.
-
(1966)
Quarterly Review of Biology
, vol.41
, pp. 247-270
-
-
Carlquist, S.1
-
19
-
-
84884299558
-
Stacks: Building and genotyping loci de novo from short-read sequences
-
Catchen J, Amores A, Hohenlohe P, Cresko W, Postlethwait JH, (2011) Stacks: building and genotyping loci de novo from short-read sequences. G3: Genes-Genomes-Genetics, 1, 171-182.
-
(2011)
G3: Genes - Genomes - Genetics
, vol.1
, pp. 171-182
-
-
Catchen, J.1
Amores, A.2
Hohenlohe, P.3
Cresko, W.4
Postlethwait, J.H.5
-
20
-
-
0033367760
-
Genetic structure and gene flow among Komodo dragon populations inferred by microsatellite loci analysis
-
Ciofi C, Bruford MW, (1999) Genetic structure and gene flow among Komodo dragon populations inferred by microsatellite loci analysis. Molecular Ecology, 8, S7-S30.
-
(1999)
Molecular Ecology
, vol.8
, pp. S7-S30
-
-
Ciofi, C.1
Bruford, M.W.2
-
21
-
-
0000442049
-
On the methods of resource division in grassland bird communities
-
Cody ML, (1969) On the methods of resource division in grassland bird communities. American Naturalist, 102, 107-147.
-
(1969)
American Naturalist
, vol.102
, pp. 107-147
-
-
Cody, M.L.1
-
22
-
-
30144436264
-
Does time since colonization influence isolation by distance? A meta-analysis
-
Crispo E, Hendry AP, (2005) Does time since colonization influence isolation by distance? A meta-analysis. Conservation Genetics, 6, 665-682.
-
(2005)
Conservation Genetics
, vol.6
, pp. 665-682
-
-
Crispo, E.1
Hendry, A.P.2
-
23
-
-
33645221085
-
Dispersal is fundamental to biogeography and the evolution of biodiversity on ocean islands
-
Crowie RH, Holland BS, (2006) Dispersal is fundamental to biogeography and the evolution of biodiversity on ocean islands. Journal of Biogeography, 33, 193-198.
-
(2006)
Journal of Biogeography
, vol.33
, pp. 193-198
-
-
Crowie, R.H.1
Holland, B.S.2
-
25
-
-
84882759440
-
Structure harvester: A website and program for visualizing structure output and implementing the Evanno method
-
Dent EA, vonHoldt BM, (2012) structure harvester: a website and program for visualizing structure output and implementing the Evanno method. Conservation Genetics Resources, 4, 350-361.
-
(2012)
Conservation Genetics Resources
, vol.4
, pp. 350-361
-
-
Dent, E.A.1
Vonholdt, B.M.2
-
26
-
-
0000114316
-
Avifaunal equilibria and species turnover rates on the Channel Islands of California
-
Diamond JM, (1969) Avifaunal equilibria and species turnover rates on the Channel Islands of California. Proceedings of the National Academy of Sciences, 64, 57-63.
-
(1969)
Proceedings of the National Academy of Sciences
, vol.64
, pp. 57-63
-
-
Diamond, J.M.1
-
27
-
-
0343022750
-
Resolution of cryptic species in the New Guinean lizard Sphenomorphus jobiensis (Scincidae) by electrophoresis
-
Donnellan SC, Aplin KP, (1989) Resolution of cryptic species in the New Guinean lizard Sphenomorphus jobiensis (Scincidae) by electrophoresis. Copeia, 1989, 81-88.
-
(1989)
Copeia
, vol.1989
, pp. 81-88
-
-
Donnellan, S.C.1
Aplin, K.P.2
-
28
-
-
43049109197
-
Selection and genomic differentiation during ecological speciation: Isolating the contributions of host associations via a comparative genome scan of Neochlamisus bebbianae leaf beetles
-
Egan SP, Nosil P, Funk DJ, (2008) Selection and genomic differentiation during ecological speciation: isolating the contributions of host associations via a comparative genome scan of Neochlamisus bebbianae leaf beetles. Evolution, 62, 1162-1181.
-
(2008)
Evolution
, vol.62
, pp. 1162-1181
-
-
Egan, S.P.1
Nosil, P.2
Funk, D.J.3
-
29
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R, Galindo J, (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
30
-
-
84888274008
-
Genome sequencing and population genomics in non-model organisms
-
Ellegren H, (2014) Genome sequencing and population genomics in non-model organisms. Trends in Ecology & Evolution, 29, 51-63.
-
(2014)
Trends in Ecology & Evolution
, vol.29
, pp. 51-63
-
-
Ellegren, H.1
-
31
-
-
84884909528
-
Carving out turf in a biodiversity hotspot: Multiple previously unrecognized shrew species co-occur on Java Island, Indonesia
-
Esselstyn JA, Maharadatunkamsi AA, Siler CD, Evans BJ, (2013) Carving out turf in a biodiversity hotspot: multiple previously unrecognized shrew species co-occur on Java Island, Indonesia. Molecular Ecology, 22, 4972-4987.
-
(2013)
Molecular Ecology
, vol.22
, pp. 4972-4987
-
-
Esselstyn, J.A.1
Maharadatunkamsi, A.A.2
Siler, C.D.3
Evans, B.J.4
-
32
-
-
21244479740
-
Detecting the number of clusters of individuals using the software structure: A simulation study
-
Evanno G, Regnaut SM, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
-
(2005)
Molecular Ecology
, vol.14
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.M.2
Goudet, J.3
-
33
-
-
84887312794
-
Robust demographic inference from genomic and SNP data
-
Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M, (2013) Robust demographic inference from genomic and SNP data. PLoS Genetics, 9, e1003905.
-
(2013)
PLoS Genetics
, vol.9
, pp. e1003905
-
-
Excoffier, L.1
Dupanloup, I.2
Huerta-Sánchez, E.3
Sousa, V.C.4
Foll, M.5
-
34
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn T, (2011) Field guide to next-generation DNA sequencers. Molecular Ecology Resources, 11, 759-769.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 759-769
-
-
Glenn, T.1
-
35
-
-
0242667720
-
Phylogenetic analysis of ecological and morphological diversification in Hispaniolan trunk-ground anoles (Anolis cybotes group)
-
Glor RE, Kolbe JJ, Powell R, Larson A, Losos JB, (2003) Phylogenetic analysis of ecological and morphological diversification in Hispaniolan trunk-ground anoles (Anolis cybotes group). Evolution, 57, 2283-2397.
-
(2003)
Evolution
, vol.57
, pp. 2283-2397
-
-
Glor, R.E.1
Kolbe, J.J.2
Powell, R.3
Larson, A.4
Losos, J.B.5
-
36
-
-
77953509166
-
Bayesian analysis of molecular variance in pyrosequences quantified population genetic structure across the genome of Lycaedeis butterflies
-
Gompert Z, Forister ML, Fordyce JA, Nice CC, Williamson RJ, Buerkle A, (2010) Bayesian analysis of molecular variance in pyrosequences quantified population genetic structure across the genome of Lycaedeis butterflies. Molecular Ecology, 19, 2455-2473.
-
(2010)
Molecular Ecology
, vol.19
, pp. 2455-2473
-
-
Gompert, Z.1
Forister, M.L.2
Fordyce, J.A.3
Nice, C.C.4
Williamson, R.J.5
Buerkle, A.6
-
39
-
-
0002461034
-
A synopsis of climatic and vegetational change in Southeast Asia
-
Heaney LR, (1991) A synopsis of climatic and vegetational change in Southeast Asia. Climatic Change, 19, 53-61.
-
(1991)
Climatic Change
, vol.19
, pp. 53-61
-
-
Heaney, L.R.1
-
40
-
-
29544443445
-
Very high resolution interpolated climate surfaces for global land areas
-
Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A, (2005) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965-1978.
-
(2005)
International Journal of Climatology
, vol.25
, pp. 1965-1978
-
-
Hijmans, R.J.1
Cameron, S.E.2
Parra, J.L.3
Jones, P.G.4
Jarvis, A.5
-
41
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
Hohenlohe PA, Bassham S, Etter PD, Stiffler N, Johnson EA, Cresko WA, (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics, 6, e1000862.
-
(2010)
PLoS Genetics
, vol.6
, pp. e1000862
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
Stiffler, N.4
Johnson, E.A.5
Cresko, W.A.6
-
42
-
-
80054919938
-
Does selection or genetic drift explain geographic differentiation of morphological characters in house sparrows Passer domesticus?
-
Holand AM, Jensen H, Tufto J, Moe R, (2011) Does selection or genetic drift explain geographic differentiation of morphological characters in house sparrows Passer domesticus? Genetics Research Cambridge, 93, 367-379.
-
(2011)
Genetics Research Cambridge
, vol.93
, pp. 367-379
-
-
Holand, A.M.1
Jensen, H.2
Tufto, J.3
Moe, R.4
-
44
-
-
84904118414
-
Defining loci in restriction-based reduced representation genomic data from nonmodel species: Sources of bias and diagnostics for optimal clustering
-
Ilut DC, Nydam ML, Hare MP, (2014) Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering. BioMed Research International, 2014, 675158.
-
(2014)
BioMed Research International
, vol.2014
, pp. 675158
-
-
Ilut, D.C.1
Nydam, M.L.2
Hare, M.P.3
-
45
-
-
0031284559
-
A comparisons of evolutionary radiations in mainland and West Indian Anolis lizards
-
Irschick DJ, Vitt LJ, Zani PA, Losos JB, (1997) A comparisons of evolutionary radiations in mainland and West Indian Anolis lizards. Ecology, 78, 2191-2203.
-
(1997)
Ecology
, vol.78
, pp. 2191-2203
-
-
Irschick, D.J.1
Vitt, L.J.2
Zani, P.A.3
Losos, J.B.4
-
46
-
-
79551673428
-
Inferring landscape effects on dispersal from genetic distances: How far can we go?
-
Jaquiery J, Broquet T, Hirzel AH, Yearsley J, Perrin N, (2011) Inferring landscape effects on dispersal from genetic distances: how far can we go? Molecular Ecology, 20, 692-705.
-
(2011)
Molecular Ecology
, vol.20
, pp. 692-705
-
-
Jaquiery, J.1
Broquet, T.2
Hirzel, A.H.3
Yearsley, J.4
Perrin, N.5
-
47
-
-
25444495255
-
Isolation by distance, web service
-
Jensen JL, Bohonak AJ, Kelley ST, (2005) Isolation by distance, web service. BMC Genetics, 6, 13.
-
(2005)
BMC Genetics
, vol.6
, pp. 13
-
-
Jensen, J.L.1
Bohonak, A.J.2
Kelley, S.T.3
-
48
-
-
11144254591
-
Do polymorphic loci require large sample sizes to estimate genetic distances?
-
Kalinowski ST, (2005) Do polymorphic loci require large sample sizes to estimate genetic distances? Heredity, 94, 33-36.
-
(2005)
Heredity
, vol.94
, pp. 33-36
-
-
Kalinowski, S.T.1
-
49
-
-
0034895387
-
Population structure and dispersal in the Canary Island caddisfly Mesophylax asperses (Trichoptera, Limnephilidae)
-
Kelly LC, Bilton DT, Rundle SD, (2001) Population structure and dispersal in the Canary Island caddisfly Mesophylax asperses (Trichoptera, Limnephilidae). Heredity, 86, 370-377.
-
(2001)
Heredity
, vol.86
, pp. 370-377
-
-
Kelly, L.C.1
Bilton, D.T.2
Rundle, S.D.3
-
50
-
-
67249107949
-
A global assessment of endemism and species richness across island and mainland regions
-
Kier G, Kreft H, Lee TM, et al,. (2009) A global assessment of endemism and species richness across island and mainland regions. Proceedings of the National Academy of Sciences, 106, 9322-9327.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 9322-9327
-
-
Kier, G.1
Kreft, H.2
Lee, T.M.3
-
51
-
-
0026591962
-
Neutral theory of quantitative genetic variance in an island model with local extinction and colonization
-
Lande R, (1992) Neutral theory of quantitative genetic variance in an island model with local extinction and colonization. Evolution, 46, 381-389.
-
(1992)
Evolution
, vol.46
, pp. 381-389
-
-
Lande, R.1
-
52
-
-
0002274477
-
The relationship between speciation and morphological evolution
-
(eds Otte D. Ender J.A.), Sinauer, Sunderland, MA
-
Larson A, (1989) The relationship between speciation and morphological evolution. In: Speciation and its Consequences (eds, Otte D, Ender JA,), pp. 579-598. Sinauer, Sunderland, MA.
-
(1989)
Speciation and Its Consequences
, pp. 579-598
-
-
Larson, A.1
-
54
-
-
70350055178
-
Geographic patterns of genetic differentiation and plumage colour variation are different in the pied flycatcher (Ficedula hypoleuca)
-
Lehtonen PK, Laaksonen T, Artemyev AV, et al,. (2009) Geographic patterns of genetic differentiation and plumage colour variation are different in the pied flycatcher (Ficedula hypoleuca). Molecular Ecology, 18, 4463-4476.
-
(2009)
Molecular Ecology
, vol.18
, pp. 4463-4476
-
-
Lehtonen, P.K.1
Laaksonen, T.2
Artemyev, A.V.3
-
56
-
-
77953322321
-
Species boundaries and cryptic diversity in a Philippine forest skink complex (Reptilia; Squamata; Scincidae; Lygosominae)
-
Linkem CW, Hesed KM, Diesmos AC, Brown RM, (2010) Species boundaries and cryptic diversity in a Philippine forest skink complex (Reptilia; Squamata; Scincidae; Lygosominae). Molecular Phylogenetics and Evolution, 56, 572-585.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.56
, pp. 572-585
-
-
Linkem, C.W.1
Hesed, K.M.2
Diesmos, A.C.3
Brown, R.M.4
-
57
-
-
82255163144
-
Molecular systematics of the Philippine forest skinks (Reptilia: Scincidae: Sphenomorphus): Testing morphological and biogeographic hypotheses of interspecific relationships
-
Linkem CW, Diesmos AC, Brown RM, (2011a) Molecular systematics of the Philippine forest skinks (Reptilia: Scincidae: Sphenomorphus): testing morphological and biogeographic hypotheses of interspecific relationships. Zoological Journal of the Linnean Society, 163, 1217-1243.
-
(2011)
Zoological Journal of the Linnean Society
, vol.163
, pp. 1217-1243
-
-
Linkem, C.W.1
Diesmos, A.C.2
Brown, R.M.3
-
58
-
-
84873718422
-
Stochastic faunal exchanges drive diversification in widespread Wallacean and Pacific Island lizards (Squamata: Scincidae: Lamprolepis smaragdina)
-
Linkem CW, Brown RM, Siler CD, et al,. (2011b) Stochastic faunal exchanges drive diversification in widespread Wallacean and Pacific Island lizards (Squamata: Scincidae: Lamprolepis smaragdina). Journal of Biogeography, 40, 507-520.
-
(2011)
Journal of Biogeography
, vol.40
, pp. 507-520
-
-
Linkem, C.W.1
Brown, R.M.2
Siler, C.D.3
-
59
-
-
84857233108
-
Biogeography of the Indo-Australian Archipelago
-
Lohman DL, de Bruyn M, Page T, et al,. (2011) Biogeography of the Indo-Australian Archipelago. Annual Review of Ecology, Evolution, and Systematics, 42, 205-226.
-
(2011)
Annual Review of Ecology, Evolution, and Systematics
, vol.42
, pp. 205-226
-
-
Lohman, D.L.1
De Bruyn, M.2
Page, T.3
-
60
-
-
0025597475
-
Ecomorphology, performance capability, and scaling of West Indian Anolis lizards: An evolutionary analysis
-
Losos JB, (1990) Ecomorphology, performance capability, and scaling of West Indian Anolis lizards: an evolutionary analysis. Ecological Monographs, 60, 369-388.
-
(1990)
Ecological Monographs
, vol.60
, pp. 369-388
-
-
Losos, J.B.1
-
61
-
-
0345304399
-
The power and promise of population genomics: From genotyping to genome typing
-
Luikart G, England PR, Tallmon D, Jordan S, Taberlet P, (2003) The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics, 4, 981-994.
-
(2003)
Nature Reviews Genetics
, vol.4
, pp. 981-994
-
-
Luikart, G.1
England, P.R.2
Tallmon, D.3
Jordan, S.4
Taberlet, P.5
-
63
-
-
0037376204
-
Landscape genetics: Combining landscape ecology and population genetics
-
Manel S, Schwartz MK, Luikart G, Taberlet P, (2003) Landscape genetics: combining landscape ecology and population genetics. TRENDS in Ecology and Evolution, 18, 189-197.
-
(2003)
TRENDS in Ecology and Evolution
, vol.18
, pp. 189-197
-
-
Manel, S.1
Schwartz, M.K.2
Luikart, G.3
Taberlet, P.4
-
66
-
-
0036603630
-
Adaptive population divergence: Markers, QTL and traits
-
McKay JK, Latta RG, (2002) Adaptive population divergence: markers, QTL and traits. Trends in Ecology and Evolution, 17, 285-291.
-
(2002)
Trends in Ecology and Evolution
, vol.17
, pp. 285-291
-
-
McKay, J.K.1
Latta, R.G.2
-
67
-
-
33750584310
-
Isolation by resistance
-
McRae BH, (2006) Isolation by resistance. Evolution, 60, 1551-1561.
-
(2006)
Evolution
, vol.60
, pp. 1551-1561
-
-
McRae, B.H.1
-
69
-
-
77953092533
-
Widespread genomic divergence during sympatric speciation
-
Michel AP, Sim S, Powell THQ, Taylor MS, Nosil P, Feder JL, (2010) Widespread genomic divergence during sympatric speciation. Proceedings of the National Academy of Sciences, 107, 9724-9729.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, pp. 9724-9729
-
-
Michel, A.P.1
Sim, S.2
Powell, T.H.Q.3
Taylor, M.S.4
Nosil, P.5
Feder, J.L.6
-
70
-
-
18444413579
-
Molecular and quantitative genetic divergence among populations of house mice with known evolutionary histories
-
Morgan TJ, Evans MA, Garland T Jr, Swallow JG, Carter PA, (2005) Molecular and quantitative genetic divergence among populations of house mice with known evolutionary histories. Heredity, 94, 518-525.
-
(2005)
Heredity
, vol.94
, pp. 518-525
-
-
Morgan, T.J.1
Evans, M.A.2
Garland, Jr.T.3
Swallow, J.G.4
Carter, P.A.5
-
71
-
-
58949096374
-
Assessing statistical power of SNPs for population structure and conservation studies
-
Morin PA, Martien KK, Taylor BL, (2009) Assessing statistical power of SNPs for population structure and conservation studies. Molecular Ecology Resources, 9, 66-73.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 66-73
-
-
Morin, P.A.1
Martien, K.K.2
Taylor, B.L.3
-
72
-
-
0034708178
-
Biodiversity hotspots for conservation priorities
-
Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J, (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853-858.
-
(2000)
Nature
, vol.403
, pp. 853-858
-
-
Myers, N.1
Mittermeier, R.A.2
Mittermeier, C.G.3
Da Fonseca, G.A.B.4
Kent, J.5
-
73
-
-
84897110582
-
Re-sequencing studies of non-model organisms using closely-related reference genomes: Optimal experimental designs and bioinformatics approaches for population genomics
-
Nevado B, Ramos-Onsins S, Perez-Enciso M, (2014) Re-sequencing studies of non-model organisms using closely-related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics. Molecular Ecology, 23, 1764-1779.
-
(2014)
Molecular Ecology
, vol.23
, pp. 1764-1779
-
-
Nevado, B.1
Ramos-Onsins, S.2
Perez-Enciso, M.3
-
74
-
-
51049100265
-
Fields: Tools for spatial data
-
Accessed January 15, 2014
-
Nychka D, Furrer R, Sain S, (2013) fields: Tools for spatial data. R package version 6.9.1. Available: http://CRAN.R-project.org/package=fields. Accessed January 15, 2014.
-
(2013)
R Package Version 6.9.1
-
-
Nychka, D.1
Furrer, R.2
Sain, S.3
-
75
-
-
32544451095
-
ST estimates: Problems and some solutions
-
ST estimates: problems and some solutions. Genetics, 171, 1331-1339.
-
(2005)
Genetics
, vol.171
, pp. 1331-1339
-
-
O'Hara, R.B.1
Merilä, J.2
-
76
-
-
26944437127
-
Comparative landscape genetics and the adaptive radiation of Darwin's finches: The role of peripheral isolation
-
Petren K, Grant PR, Grant BR, Keller LF, (2005) Comparative landscape genetics and the adaptive radiation of Darwin's finches: The role of peripheral isolation. Molecular Ecology, 14, 2943-2957.
-
(2005)
Molecular Ecology
, vol.14
, pp. 2943-2957
-
-
Petren, K.1
Grant, P.R.2
Grant, B.R.3
Keller, L.F.4
-
77
-
-
27944446350
-
Maximum entropy modeling of species geographic distributions
-
Phillips SJ, Anderson RP, Schapire RE, (2006) Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231-259.
-
(2006)
Ecological Modelling
, vol.190
, pp. 231-259
-
-
Phillips, S.J.1
Anderson, R.P.2
Schapire, R.E.3
-
79
-
-
0034118493
-
Inference of population structure using multilocus genotype data genotype data
-
Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data genotype data. Genetics, 155, 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
80
-
-
84887319258
-
Optimizing the trade-off between spatial and genetic sampling efforts in patchy populations: Towards a better assessment of functional connectivity using an individual-based sampling scheme
-
Prunier JG, Kaufmann B, Fenet S, et al,. (2013) Optimizing the trade-off between spatial and genetic sampling efforts in patchy populations: towards a better assessment of functional connectivity using an individual-based sampling scheme. Molecular Ecology, 22, 5516-5530.
-
(2013)
Molecular Ecology
, vol.22
, pp. 5516-5530
-
-
Prunier, J.G.1
Kaufmann, B.2
Fenet, S.3
-
81
-
-
12344290679
-
The resurrection of oceanic dispersal in historical biogeography
-
de Queiroz A, (2005) The resurrection of oceanic dispersal in historical biogeography. Trends in Ecology and Evolution, 20, 68-73.
-
(2005)
Trends in Ecology and Evolution
, vol.20
, pp. 68-73
-
-
De Queiroz, A.1
-
82
-
-
84902482306
-
Analysis and visualization of complex macroevolutionary dynamics: An example from Australian scincid lizards
-
Rabosky DL, Donnellan SC, Grundler M, Lovette IJ, (2014) Analysis and visualization of complex macroevolutionary dynamics: an example from Australian scincid lizards. Systematic Biology, 63, 610-627.
-
(2014)
Systematic Biology
, vol.63
, pp. 610-627
-
-
Rabosky, D.L.1
Donnellan, S.C.2
Grundler, M.3
Lovette, I.J.4
-
84
-
-
70349472875
-
Reconstructing Indian population history
-
Reich D, Thangaraj K, Patterson N, Price AL, Singh L, (2009) Reconstructing Indian population history. Nature, 461, 489-494.
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
85
-
-
34447556050
-
Population structure and gene flow of Anopheles farauti s.s. (Diptera:Culicidae) among ten sites on five islands of Vanuatu: Implications for malaria control
-
Reiff DM, Kaneko A, Taleo G, Amos M, Lum JK, (2007) Population structure and gene flow of Anopheles farauti s.s. (Diptera:Culicidae) among ten sites on five islands of Vanuatu: implications for malaria control. Journal of Medical Entomology, 44, 601-607.
-
(2007)
Journal of Medical Entomology
, vol.44
, pp. 601-607
-
-
Reiff, D.M.1
Kaneko, A.2
Taleo, G.3
Amos, M.4
Lum, J.K.5
-
86
-
-
33745134675
-
Multiple levels of allopatric divergence in the endemic Philippine fruit bat Haplonycteris fischeri (Pteropodidae)
-
Roberts TE, (2006) Multiple levels of allopatric divergence in the endemic Philippine fruit bat Haplonycteris fischeri (Pteropodidae). Biological Journal of the Linnean Society, 88, 329-349.
-
(2006)
Biological Journal of the Linnean Society
, vol.88
, pp. 329-349
-
-
Roberts, T.E.1
-
87
-
-
79952948225
-
Passage: Pattern analysis, spatial statistics and geographic exegesis. Version 2
-
Rosenberg MS, Anderson CD, (2011) passage: pattern analysis, spatial statistics and geographic exegesis. Version 2. Methods in Ecology and Evolution, 2, 229-232.
-
(2011)
Methods in Ecology and Evolution
, vol.2
, pp. 229-232
-
-
Rosenberg, M.S.1
Anderson, C.D.2
-
88
-
-
0036520913
-
When rare species become endangered: Cryptic speciation in myrmecophilous hoverflies
-
Schönrogge K, Barr B, Wardlaw JC, et al,. (2002) When rare species become endangered: cryptic speciation in myrmecophilous hoverflies. Biological Journal of the Linnean Society, 75, 291-300.
-
(2002)
Biological Journal of the Linnean Society
, vol.75
, pp. 291-300
-
-
Schönrogge, K.1
Barr, B.2
Wardlaw, J.C.3
-
89
-
-
84890876356
-
Genetic isolation by environment or distance: Which pattern of gene flow is most common?
-
Sexton JP, Hangartner SB, Hoffman AA, (2014) Genetic isolation by environment or distance: which pattern of gene flow is most common? Evolution, 68, 1-15.
-
(2014)
Evolution
, vol.68
, pp. 1-15
-
-
Sexton, J.P.1
Hangartner, S.B.2
Hoffman, A.A.3
-
90
-
-
80052093879
-
Evidence for repeated acquisition and loss of complex body-form characters in an insular clade of Southeast Asian semi-fossorial skinks
-
Siler CD, Brown RM, (2011) Evidence for repeated acquisition and loss of complex body-form characters in an insular clade of Southeast Asian semi-fossorial skinks. Evolution, 65, 2641-2663.
-
(2011)
Evolution
, vol.65
, pp. 2641-2663
-
-
Siler, C.D.1
Brown, R.M.2
-
91
-
-
79952739202
-
Phylogeny of Philippine slender skinks (Scincidae: Brachymeles) reveals underestimated species diversity, complex biogeographical relationships, and cryptic patterns of lineage diversification
-
Siler CD, Diesmos AC, Alcala AC, Brown RM, (2011) Phylogeny of Philippine slender skinks (Scincidae: Brachymeles) reveals underestimated species diversity, complex biogeographical relationships, and cryptic patterns of lineage diversification. Molecular Phylogenetics and Evolution, 59, 53-65.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.59
, pp. 53-65
-
-
Siler, C.D.1
Diesmos, A.C.2
Alcala, A.C.3
Brown, R.M.4
-
92
-
-
0027370038
-
Population structure in Daphnia obtuse: Quantitative genetic and allozyme variation
-
Spitz K, (1993) Population structure in Daphnia obtuse: quantitative genetic and allozyme variation. Genetics, 135, 367-374.
-
(1993)
Genetics
, vol.135
, pp. 367-374
-
-
Spitz, K.1
-
93
-
-
77952095770
-
Landscape genetics: Where are we now?
-
Storfer AS, Murphy MA, Spear SF, Holderegger R, Waits LP, (2010) Landscape genetics: where are we now? Molecular Ecology, 19, 3496-3514.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3496-3514
-
-
Storfer, A.S.1
Murphy, M.A.2
Spear, S.F.3
Holderegger, R.4
Waits, L.P.5
-
94
-
-
33748638817
-
High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian forest frogs
-
Stuart BL, Inger RF, Voris HK, (2006) High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian forest frogs. Biology Letters, 2, 470-474.
-
(2006)
Biology Letters
, vol.2
, pp. 470-474
-
-
Stuart, B.L.1
Inger, R.F.2
Voris, H.K.3
-
95
-
-
0026616205
-
Genetic divergence and morphological stasis in a lineage of African cichlid fishes
-
Sturmbauer C, Meyer A, (1992) Genetic divergence and morphological stasis in a lineage of African cichlid fishes. Nature, 358, 578-581.
-
(1992)
Nature
, vol.358
, pp. 578-581
-
-
Sturmbauer, C.1
Meyer, A.2
-
96
-
-
24944471763
-
Genomic islands of speciation in Anopheles gambiae
-
Turner TL, Hahn MW, Nuzhdin SV, (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biology, 3, e285.
-
(2005)
PLoS Biology
, vol.3
, pp. e285
-
-
Turner, T.L.1
Hahn, M.W.2
Nuzhdin, S.V.3
-
98
-
-
0034492377
-
Maps of Pleistocene sea levels in Southeast Asia: Shore lines, river systems and time durations
-
Voris HK, (2000) Maps of Pleistocene sea levels in Southeast Asia: shore lines, river systems and time durations. Journal of Biogeography, 27, 1153-1167.
-
(2000)
Journal of Biogeography
, vol.27
, pp. 1153-1167
-
-
Voris, H.K.1
-
100
-
-
77749261628
-
Estimating divergence parameters with small samples from a large number of loci
-
Wang Y, Hey J, (2010) Estimating divergence parameters with small samples from a large number of loci. Genetics, 184, 363-379.
-
(2010)
Genetics
, vol.184
, pp. 363-379
-
-
Wang, Y.1
Hey, J.2
-
103
-
-
33646690277
-
Why does a trait evolve multiple times within a clade? Repeated evolution of snake-like body form in squamate reptiles
-
Wiens JJ, Brandley MC, Reeder TW, (2006) Why does a trait evolve multiple times within a clade? Repeated evolution of snake-like body form in squamate reptiles. Evolution, 60, 123-141.
-
(2006)
Evolution
, vol.60
, pp. 123-141
-
-
Wiens, J.J.1
Brandley, M.C.2
Reeder, T.W.3
-
104
-
-
0003113101
-
The origin of faunas. Evolution of lizard congeners in a complex island fauna: A trivial analysis
-
Williams EE, (1972) The origin of faunas. Evolution of lizard congeners in a complex island fauna: a trivial analysis. Evolutionary Biology, 6, 47-89.
-
(1972)
Evolutionary Biology
, vol.6
, pp. 47-89
-
-
Williams, E.E.1
-
105
-
-
84865056265
-
ST do not necessarily require large sample sizes when using many SNP markers
-
ST do not necessarily require large sample sizes when using many SNP markers. PLoS ONE, 7, e42649.
-
(2012)
PLoS ONE
, vol.7
, pp. e42649
-
-
Willing, E.M.1
Dreyer, C.2
Van Oosterhout, C.3
-
106
-
-
0027800158
-
Dispersal mode, seed shadows, and colonization patterns
-
Wilson MF, (1993) Dispersal mode, seed shadows, and colonization patterns. Vegetatio, 107, 261-280.
-
(1993)
Vegetatio
, vol.107
, pp. 261-280
-
-
Wilson, M.F.1
-
107
-
-
84859438410
-
Evidence for stabilizing selection and slow divergent evolution of male genitalia in a millipede (Antichiropus variabilis)
-
Wojcieszek JM, Simmons LW, (2011) Evidence for stabilizing selection and slow divergent evolution of male genitalia in a millipede (Antichiropus variabilis). Evolution, 66, 1138-1153.
-
(2011)
Evolution
, vol.66
, pp. 1138-1153
-
-
Wojcieszek, J.M.1
Simmons, L.W.2
-
108
-
-
77952089984
-
Biogeography and conservation in Southeast Asia: How 2.7 million years of repeated environmental fluctuations affect today's patterns and the future of the remaining refugial-phase biodiversity
-
Woodruff DS, (2010) Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today's patterns and the future of the remaining refugial-phase biodiversity. Biodiversity and Conservation, 19, 919-941.
-
(2010)
Biodiversity and Conservation
, vol.19
, pp. 919-941
-
-
Woodruff, D.S.1
-
109
-
-
77954319020
-
Sequencing of 50 human exomes reveals adaptation to high altitude
-
Yi X, Liang Y, Huerta-Sanchez E, et al,. (2010) Sequencing of 50 human exomes reveals adaptation to high altitude. Science, 329, 75-78.
-
(2010)
Science
, vol.329
, pp. 75-78
-
-
Yi, X.1
Liang, Y.2
Huerta-Sanchez, E.3
-
110
-
-
77950061546
-
Philippines, geology
-
(eds Gillespie R. Clague D.), University of California Press, Berkeley
-
Yumul GP, Dimalanta CB, Marquez EJ, Queaño KL, (2009) Philippines, geology. In: Encyclopedia of Islands (eds, Gillespie R, Clague D,), pp. 96-118. University of California Press, Berkeley.
-
(2009)
Encyclopedia of Islands
, pp. 96-118
-
-
Yumul, G.P.1
Dimalanta, C.B.2
Marquez, E.J.3
Queaño, K.L.4
|