Estimates of genetic differentiation measured by fst do not necessarily require large sample sizes when using many snp markers

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Willing, Eva Maria ^a   Dreyer, Christine ^a   van Oosterhout, Cock ^b  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

^b UNIVERSITY OF EAST ANGLIA   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; FEMALE; GENE FREQUENCY; GENE LOCUS; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC DIFFERENCE; GENETIC MARKER; GENETIC VARIABILITY; GENOTYPE; HUMAN; INTERMETHOD COMPARISON; MALE; POPULATION SIZE; PROCESS DEVELOPMENT; PROCESS MODEL; SINGLE NUCLEOTIDE POLYMORPHISM;

ALLELES; ANIMALS; ECOLOGY; FEMALE; GENE FREQUENCY; GENETIC DRIFT; GENETIC MARKERS; GENETICS, POPULATION; GENOME; GENOTYPE; HUMANS; MALE; MODELS, GENETIC; MODELS, STATISTICAL; MUTATION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 84865056265     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042649     Document Type: Article

References (19)

1. Morin PA, Luikart G, Wayne RK, ((2004)) group Sw ((2004)) SNPs in ecology, evolution and conservation. Trends in Ecology and Evolution 19:: 208--216.
2. Rosenblum EB, Novembre J, ((2007)) Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. The Journal of Heredity 98:: 331--336.
3. Seddon JM, Parker HG, Ostrander EA, Ellegren H, ((2005)) SNPs in ecological and conservation studies: a test in the Scandinavian wolf population. Molecular Ecology 14:: 503--511.
4. Narum SR, Banks M, Beacham TD, Bellinger MR, Campbell MR, et al. ((2008)) Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms. Molecular Ecology 17:: 3464--3477.
5. Willing EM, Bentzen P, van Oosterhout C, Hoffmann M, Cable J, et al. ((2010)) Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology 19:: 968--984.
6. Tautz D, Ellegren H, Weigel D, ((2010)) Next generation molecular ecology. Molecular Ecology 19 Suppl 1:: 1--3.
7. Lewontin RC, Krakauer J, ((1973)) Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74:: 175--195.
8. Luikart G, England PR, Tallmon D, Jordan S, Taberlet P, ((2003)) The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics 4:: 981--994.
9. Holsinger KE, Weir BS, ((2009)) Genetics in geographically structured populations: defining, estimating and interpreting F(ST). Nature Reviews Genetics 10:: 639--650.
10. Kalinowski ST, ((2005)) Do polymorphic loci require large sample sizes to estimate genetic distances? Heredity 94:: 33--36.
11. Morin PA, Martien KK, Taylor BL, ((2009)) Assessing statistical power of SNPs for population structure and conservation studies. Molecular Ecology Resources 9:: 66--73.
12. Excoffier L (2007) Analysis of Population Subdivision. In: Balding DJ, Bishop M, Cannings C, editors. Handbook of Statistical Genetics. 3rd ed. West Sussex: John Wiley & Sons, Ltd. 982 p.
13. Raufaste N, Bonhomme F, ((2000)) Properties of bias and variance of two multiallelic estimators of F(ST). Theoretical Population Biology 57:: 285--296.
14. Reich D, Thangaraj K, Patterson N, Price AL, Singh L, ((2009)) Reconstructing Indian population history. Nature 461:: 489--494.
15. Pfender WF, Saha MC, Johnson EA, Slabaugh MB, ((2011)) Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theoretical Applied Genetics 122:: 1467--80.
16. Hohenlohe PA, Amish SJ, Catchen JM, Allendorf FW, Luikart G, ((2011)) Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Molecular Ecology Resources 11 Suppl 1:: 117--122.
17. Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. ((2011)) A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. PloS ONE 6:: e19379.
18. Weir BS, Cockerham CC, ((1984)) Estimating F-statistics for the analysis of population structure. Evolution 38:: 1358--1370.
19. Weir BS (1996) Genetic Data Analysis II. Sunderland: Sinauer Associates Inc. 445 p.