-
1
-
-
84887852466
-
Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming
-
E. Apostolou, F. Ferrari, R.M. Walsh, O. Bar-Nur, M. Stadtfeld, S. Cheloufi, H.T. Stuart, J.M. Polo, T.K. Ohsumi, and M.L. Borowsky Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming Cell Stem Cell 12 2013 699 712
-
(2013)
Cell Stem Cell
, vol.12
, pp. 699-712
-
-
Apostolou, E.1
Ferrari, F.2
Walsh, R.M.3
Bar-Nur, O.4
Stadtfeld, M.5
Cheloufi, S.6
Stuart, H.T.7
Polo, J.M.8
Ohsumi, T.K.9
Borowsky, M.L.10
-
2
-
-
84900465317
-
Three-dimensional modeling of the P falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
-
F. Ay, E.M. Bunnik, N. Varoquaux, S.M. Bol, J. Prudhomme, J.P. Vert, W.S. Noble, and K.G. Le Roch Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression Genome Res. 24 2014 974 988
-
(2014)
Genome Res.
, vol.24
, pp. 974-988
-
-
Ay, F.1
Bunnik, E.M.2
Varoquaux, N.3
Bol, S.M.4
Prudhomme, J.5
Vert, J.P.6
Noble, W.S.7
Le Roch, K.G.8
-
3
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
F. Bantignies, V. Roure, I. Comet, B. Leblanc, B. Schuettengruber, J. Bonnet, V. Tixier, A. Mas, and G. Cavalli Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila Cell 144 2011 214 226
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
Roure, V.2
Comet, I.3
Leblanc, B.4
Schuettengruber, B.5
Bonnet, J.6
Tixier, V.7
Mas, A.8
Cavalli, G.9
-
4
-
-
84867070913
-
Complexity of chromatin folding is captured by the strings and binders switch model
-
M. Barbieri, M. Chotalia, J. Fraser, L.M. Lavitas, J. Dostie, A. Pombo, and M. Nicodemi Complexity of chromatin folding is captured by the strings and binders switch model Proc. Natl. Acad. Sci. USA 109 2012 16173 16178
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 16173-16178
-
-
Barbieri, M.1
Chotalia, M.2
Fraser, J.3
Lavitas, L.M.4
Dostie, J.5
Pombo, A.6
Nicodemi, M.7
-
5
-
-
84875200698
-
Functional implications of genome topology
-
G. Cavalli, and T. Misteli Functional implications of genome topology Nat. Struct. Mol. Biol. 20 2013 290 299
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 290-299
-
-
Cavalli, G.1
Misteli, T.2
-
6
-
-
33746076412
-
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced
-
J. Chaumeil, P. Le Baccon, A. Wutz, and E. Heard A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced Genes Dev. 20 2006 2223 2237
-
(2006)
Genes Dev.
, vol.20
, pp. 2223-2237
-
-
Chaumeil, J.1
Le Baccon, P.2
Wutz, A.3
Heard, E.4
-
7
-
-
84894063115
-
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
-
B. Chen, L.A. Gilbert, B.A. Cimini, J. Schnitzbauer, W. Zhang, G.W. Li, J. Park, E.H. Blackburn, J.S. Weissman, L.S. Qi, and B. Huang Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system Cell 155 2013 1479 1491
-
(2013)
Cell
, vol.155
, pp. 1479-1491
-
-
Chen, B.1
Gilbert, L.A.2
Cimini, B.A.3
Schnitzbauer, J.4
Zhang, W.5
Li, G.W.6
Park, J.7
Blackburn, E.H.8
Weissman, J.S.9
Qi, L.S.10
Huang, B.11
-
8
-
-
84857467274
-
Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion
-
T. Cheutin, and G. Cavalli Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion PLoS Genet. 8 2012 e1002465
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002465
-
-
Cheutin, T.1
Cavalli, G.2
-
9
-
-
79952314830
-
Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair
-
I. Chiolo, A. Minoda, S.U. Colmenares, A. Polyzos, S.V. Costes, and G.H. Karpen Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair Cell 144 2011 732 744
-
(2011)
Cell
, vol.144
, pp. 732-744
-
-
Chiolo, I.1
Minoda, A.2
Colmenares, S.U.3
Polyzos, A.4
Costes, S.V.5
Karpen, G.H.6
-
10
-
-
79953162883
-
Function and regulation of the Mediator complex
-
R.C. Conaway, and J.W. Conaway Function and regulation of the Mediator complex Curr. Opin. Genet. Dev. 21 2011 225 230
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 225-230
-
-
Conaway, R.C.1
Conaway, J.W.2
-
11
-
-
0029937208
-
Genetic modification of heterochromatic association and nuclear organization in Drosophila
-
A.K. Csink, and S. Henikoff Genetic modification of heterochromatic association and nuclear organization in Drosophila Nature 381 1996 529 531
-
(1996)
Nature
, vol.381
, pp. 529-531
-
-
Csink, A.K.1
Henikoff, S.2
-
12
-
-
84886853624
-
Topology of mammalian developmental enhancers and their regulatory landscapes
-
W. de Laat, and D. Duboule Topology of mammalian developmental enhancers and their regulatory landscapes Nature 502 2013 499 506
-
(2013)
Nature
, vol.502
, pp. 499-506
-
-
De Laat, W.1
Duboule, D.2
-
13
-
-
84884134904
-
The pluripotent genome in three dimensions is shaped around pluripotency factors
-
E. de Wit, B.A. Bouwman, Y. Zhu, P. Klous, E. Splinter, M.J. Verstegen, P.H. Krijger, N. Festuccia, E.P. Nora, and M. Welling The pluripotent genome in three dimensions is shaped around pluripotency factors Nature 501 2013 227 231
-
(2013)
Nature
, vol.501
, pp. 227-231
-
-
De Wit, E.1
Bouwman, B.A.2
Zhu, Y.3
Klous, P.4
Splinter, E.5
Verstegen, M.J.6
Krijger, P.H.7
Festuccia, N.8
Nora, E.P.9
Welling, M.10
-
14
-
-
84881119091
-
The genomic landscape of cohesin-associated chromatin interactions
-
L.E. DeMare, J. Leng, J. Cotney, S.K. Reilly, J. Yin, R. Sarro, and J.P. Noonan The genomic landscape of cohesin-associated chromatin interactions Genome Res. 23 2013 1224 1234
-
(2013)
Genome Res.
, vol.23
, pp. 1224-1234
-
-
Demare, L.E.1
Leng, J.2
Cotney, J.3
Reilly, S.K.4
Yin, J.5
Sarro, R.6
Noonan, J.P.7
-
15
-
-
84861964135
-
Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
-
W. Deng, J. Lee, H. Wang, J. Miller, A. Reik, P.D. Gregory, A. Dean, and G.A. Blobel Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor Cell 149 2012 1233 1244
-
(2012)
Cell
, vol.149
, pp. 1233-1244
-
-
Deng, W.1
Lee, J.2
Wang, H.3
Miller, J.4
Reik, A.5
Gregory, P.D.6
Dean, A.7
Blobel, G.A.8
-
16
-
-
84908439526
-
Reactivation of developmentally silenced globin genes by forced chromatin looping
-
W. Deng, J.W. Rupon, I. Krivega, L. Breda, I. Motta, K.S. Jahn, A. Reik, P.D. Gregory, S. Rivella, A. Dean, and G.A. Blobel Reactivation of developmentally silenced globin genes by forced chromatin looping Cell 158 2014 849 860
-
(2014)
Cell
, vol.158
, pp. 849-860
-
-
Deng, W.1
Rupon, J.W.2
Krivega, I.3
Breda, L.4
Motta, I.5
Jahn, K.S.6
Reik, A.7
Gregory, P.D.8
Rivella, S.9
Dean, A.10
Blobel, G.A.11
-
17
-
-
85027929606
-
Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization
-
M. Denholtz, G. Bonora, C. Chronis, E. Splinter, W. de Laat, J. Ernst, M. Pellegrini, and K. Plath Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization Cell Stem Cell 13 2013 602 616
-
(2013)
Cell Stem Cell
, vol.13
, pp. 602-616
-
-
Denholtz, M.1
Bonora, G.2
Chronis, C.3
Splinter, E.4
De Laat, W.5
Ernst, J.6
Pellegrini, M.7
Plath, K.8
-
18
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J.S. Liu, and B. Ren Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 2012 376 380
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
19
-
-
5444255213
-
The active spatial organization of the beta-globin locus requires the transcription factor EKLF
-
R. Drissen, R.J. Palstra, N. Gillemans, E. Splinter, F. Grosveld, S. Philipsen, and W. de Laat The active spatial organization of the beta-globin locus requires the transcription factor EKLF Genes Dev. 18 2004 2485 2490
-
(2004)
Genes Dev.
, vol.18
, pp. 2485-2490
-
-
Drissen, R.1
Palstra, R.J.2
Gillemans, N.3
Splinter, E.4
Grosveld, F.5
Philipsen, S.6
De Laat, W.7
-
20
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Z. Duan, M. Andronescu, K. Schutz, S. McIlwain, Y.J. Kim, C. Lee, J. Shendure, S. Fields, C.A. Blau, and W.S. Noble A three-dimensional model of the yeast genome Nature 465 2010 363 367
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
Lee, C.6
Shendure, J.7
Fields, S.8
Blau, C.A.9
Noble, W.S.10
-
21
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
J. Ernst, P. Kheradpour, T.S. Mikkelsen, N. Shoresh, L.D. Ward, C.B. Epstein, X. Zhang, L. Wang, R. Issner, and M. Coyne Mapping and analysis of chromatin state dynamics in nine human cell types Nature 473 2011 43 49
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
22
-
-
84886777912
-
Chromosomal contact permits transcription between coregulated genes
-
S. Fanucchi, Y. Shibayama, S. Burd, M.S. Weinberg, and M.M. Mhlanga Chromosomal contact permits transcription between coregulated genes Cell 155 2013 606 620
-
(2013)
Cell
, vol.155
, pp. 606-620
-
-
Fanucchi, S.1
Shibayama, Y.2
Burd, S.3
Weinberg, M.S.4
Mhlanga, M.M.5
-
23
-
-
84921685857
-
Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis
-
S. Feng, S.J. Cokus, V. Schubert, J. Zhai, M. Pellegrini, and S.E. Jacobsen Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis Mol. Cell 55 2014 694 707
-
(2014)
Mol. Cell
, vol.55
, pp. 694-707
-
-
Feng, S.1
Cokus, S.J.2
Schubert, V.3
Zhai, J.4
Pellegrini, M.5
Jacobsen, S.E.6
-
24
-
-
84872025457
-
A polycomb group protein is retained at specific sites on chromatin in mitosis
-
N.E. Follmer, A.H. Wani, and N.J. Francis A polycomb group protein is retained at specific sites on chromatin in mitosis PLoS Genet. 8 2012 e1003135
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003135
-
-
Follmer, N.E.1
Wani, A.H.2
Francis, N.J.3
-
25
-
-
0345039879
-
Global chromosome positions are transmitted through mitosis in mammalian cells
-
D. Gerlich, J. Beaudouin, B. Kalbfuss, N. Daigle, R. Eils, and J. Ellenberg Global chromosome positions are transmitted through mitosis in mammalian cells Cell 112 2003 751 764
-
(2003)
Cell
, vol.112
, pp. 751-764
-
-
Gerlich, D.1
Beaudouin, J.2
Kalbfuss, B.3
Daigle, N.4
Eils, R.5
Ellenberg, J.6
-
26
-
-
84905593782
-
Enhancer loops appear stable during development and are associated with paused polymerase
-
Y. Ghavi-Helm, F.A. Klein, T. Pakozdi, L. Ciglar, D. Noordermeer, W. Huber, and E.E. Furlong Enhancer loops appear stable during development and are associated with paused polymerase Nature 512 2014 96 100
-
(2014)
Nature
, vol.512
, pp. 96-100
-
-
Ghavi-Helm, Y.1
Klein, F.A.2
Pakozdi, T.3
Ciglar, L.4
Noordermeer, D.5
Huber, W.6
Furlong, E.E.7
-
27
-
-
84900297485
-
Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
-
L. Giorgetti, R. Galupa, E.P. Nora, T. Piolot, F. Lam, J. Dekker, G. Tiana, and E. Heard Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription Cell 157 2014 950 963
-
(2014)
Cell
, vol.157
, pp. 950-963
-
-
Giorgetti, L.1
Galupa, R.2
Nora, E.P.3
Piolot, T.4
Lam, F.5
Dekker, J.6
Tiana, G.7
Heard, E.8
-
28
-
-
84921643810
-
Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila
-
S. Grob, M.W. Schmid, and U. Grossniklaus Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila Mol. Cell 55 2014 678 693
-
(2014)
Mol. Cell
, vol.55
, pp. 678-693
-
-
Grob, S.1
Schmid, M.W.2
Grossniklaus, U.3
-
29
-
-
84903463126
-
Terminate and make a loop: Regulation of transcriptional directionality
-
P. Grzechnik, S.M. Tan-Wong, and N.J. Proudfoot Terminate and make a loop: regulation of transcriptional directionality Trends Biochem. Sci. 39 2014 319 327
-
(2014)
Trends Biochem. Sci.
, vol.39
, pp. 319-327
-
-
Grzechnik, P.1
Tan-Wong, S.M.2
Proudfoot, N.J.3
-
30
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
S. Hadjur, L.M. Williams, N.K. Ryan, B.S. Cobb, T. Sexton, P. Fraser, A.G. Fisher, and M. Merkenschlager Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus Nature 460 2009 410 413
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
Williams, L.M.2
Ryan, N.K.3
Cobb, B.S.4
Sexton, T.5
Fraser, P.6
Fisher, A.G.7
Merkenschlager, M.8
-
31
-
-
84901649822
-
Global view of enhancer-promoter interactome in human cells
-
B. He, C. Chen, L. Teng, and K. Tan Global view of enhancer-promoter interactome in human cells Proc. Natl. Acad. Sci. USA 111 2014 E2191 E2199
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E2191-E2199
-
-
He, B.1
Chen, C.2
Teng, L.3
Tan, K.4
-
32
-
-
84867912686
-
The chromatin insulator CTCF and the emergence of metazoan diversity
-
P. Heger, B. Marin, M. Bartkuhn, E. Schierenberg, and T. Wiehe The chromatin insulator CTCF and the emergence of metazoan diversity Proc. Natl. Acad. Sci. USA 109 2012 17507 17512
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 17507-17512
-
-
Heger, P.1
Marin, B.2
Bartkuhn, M.3
Schierenberg, E.4
Wiehe, T.5
-
33
-
-
84913537605
-
Genome-wide map of regulatory interactions in the human genome
-
N. Heidari, D.H. Phanstiel, C. He, F. Grubert, F. Jahanbani, M. Kasowski, M.Q. Zhang, and M.P. Snyder Genome-wide map of regulatory interactions in the human genome Genome Res. 24 2014 1905 1917
-
(2014)
Genome Res.
, vol.24
, pp. 1905-1917
-
-
Heidari, N.1
Phanstiel, D.H.2
He, C.3
Grubert, F.4
Jahanbani, F.5
Kasowski, M.6
Zhang, M.Q.7
Snyder, M.P.8
-
34
-
-
84907420615
-
Comparative analysis of metazoan chromatin organization
-
J.W. Ho, Y.L. Jung, T. Liu, B.H. Alver, S. Lee, K. Ikegami, K.A. Sohn, A. Minoda, M.Y. Tolstorukov, and A. Appert Comparative analysis of metazoan chromatin organization Nature 512 2014 449 452
-
(2014)
Nature
, vol.512
, pp. 449-452
-
-
Ho, J.W.1
Jung, Y.L.2
Liu, T.3
Alver, B.H.4
Lee, S.5
Ikegami, K.6
Sohn, K.A.7
Minoda, A.8
Tolstorukov, M.Y.9
Appert, A.10
-
35
-
-
77649261872
-
Cell type specificity of chromatin organization mediated by CTCF and cohesin
-
C. Hou, R. Dale, and A. Dean Cell type specificity of chromatin organization mediated by CTCF and cohesin Proc. Natl. Acad. Sci. USA 107 2010 3651 3656
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 3651-3656
-
-
Hou, C.1
Dale, R.2
Dean, A.3
-
36
-
-
84869003748
-
Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains
-
C. Hou, L. Li, Z.S. Qin, and V.G. Corces Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains Mol. Cell 48 2012 471 484
-
(2012)
Mol. Cell
, vol.48
, pp. 471-484
-
-
Hou, C.1
Li, L.2
Qin, Z.S.3
Corces, V.G.4
-
37
-
-
85003044117
-
Deletions of chromosomal regulatory boundaries are associated with congenital disease
-
J. Ibn-Salem, S. Köhler, M.I. Love, H.R. Chung, N. Huang, M.E. Hurles, M. Haendel, N.L. Washington, D. Smedley, and C.J. Mungall Deletions of chromosomal regulatory boundaries are associated with congenital disease Genome Biol. 15 2014 423
-
(2014)
Genome Biol.
, vol.15
, pp. 423
-
-
Ibn-Salem, J.1
Köhler, S.2
Love, M.I.3
Chung, H.R.4
Huang, N.5
Hurles, M.E.6
Haendel, M.7
Washington, N.L.8
Smedley, D.9
Mungall, C.J.10
-
38
-
-
84887620842
-
A high-resolution map of the three-dimensional chromatin interactome in human cells
-
F. Jin, Y. Li, J.R. Dixon, S. Selvaraj, Z. Ye, A.Y. Lee, C.A. Yen, A.D. Schmitt, C.A. Espinoza, and B. Ren A high-resolution map of the three-dimensional chromatin interactome in human cells Nature 503 2013 290 294
-
(2013)
Nature
, vol.503
, pp. 290-294
-
-
Jin, F.1
Li, Y.2
Dixon, J.R.3
Selvaraj, S.4
Ye, Z.5
Lee, A.Y.6
Yen, C.A.7
Schmitt, A.D.8
Espinoza, C.A.9
Ren, B.10
-
39
-
-
84924870007
-
Modeling epigenome folding: Formation and dynamics of topologically associated chromatin domains
-
D. Jost, P. Carrivain, G. Cavalli, and C. Vaillant Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains Nucleic Acids Res. 42 2014 9553 9561
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 9553-9561
-
-
Jost, D.1
Carrivain, P.2
Cavalli, G.3
Vaillant, C.4
-
40
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
M.H. Kagey, J.J. Newman, S. Bilodeau, Y. Zhan, D.A. Orlando, N.L. van Berkum, C.C. Ebmeier, J. Goossens, P.B. Rahl, and S.S. Levine Mediator and cohesin connect gene expression and chromatin architecture Nature 467 2010 430 435
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
Van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
41
-
-
79960935122
-
A dynamical model reveals gene co-localizations in nucleus
-
J. Kang, B. Xu, Y. Yao, W. Lin, C. Hennessy, P. Fraser, and J. Feng A dynamical model reveals gene co-localizations in nucleus PLoS Comput. Biol. 7 2011 e1002094
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. e1002094
-
-
Kang, J.1
Xu, B.2
Yao, Y.3
Lin, W.4
Hennessy, C.5
Fraser, P.6
Feng, J.7
-
42
-
-
84894589713
-
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation
-
K.R. Kieffer-Kwon, Z. Tang, E. Mathe, J. Qian, M.H. Sung, G. Li, W. Resch, S. Baek, N. Pruett, and L. Grøntved Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation Cell 155 2013 1507 1520
-
(2013)
Cell
, vol.155
, pp. 1507-1520
-
-
Kieffer-Kwon, K.R.1
Tang, Z.2
Mathe, E.3
Qian, J.4
Sung, M.H.5
Li, G.6
Resch, W.7
Baek, S.8
Pruett, N.9
Grøntved, L.10
-
43
-
-
84875703872
-
Single-cell dynamics of genome-nuclear lamina interactions
-
J. Kind, L. Pagie, H. Ortabozkoyun, S. Boyle, S.S. de Vries, H. Janssen, M. Amendola, L.D. Nolen, W.A. Bickmore, and B. van Steensel Single-cell dynamics of genome-nuclear lamina interactions Cell 153 2013 178 192
-
(2013)
Cell
, vol.153
, pp. 178-192
-
-
Kind, J.1
Pagie, L.2
Ortabozkoyun, H.3
Boyle, S.4
De Vries, S.S.5
Janssen, H.6
Amendola, M.7
Nolen, L.D.8
Bickmore, W.A.9
Van Steensel, B.10
-
44
-
-
33746063711
-
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
-
S. Kurukuti, V.K. Tiwari, G. Tavoosidana, E. Pugacheva, A. Murrell, Z. Zhao, V. Lobanenkov, W. Reik, and R. Ohlsson CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2 Proc. Natl. Acad. Sci. USA 103 2006 10684 10689
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 10684-10689
-
-
Kurukuti, S.1
Tiwari, V.K.2
Tavoosidana, G.3
Pugacheva, E.4
Murrell, A.5
Zhao, Z.6
Lobanenkov, V.7
Reik, W.8
Ohlsson, R.9
-
45
-
-
34848825691
-
Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
-
C. Lanzuolo, V. Roure, J. Dekker, F. Bantignies, and V. Orlando Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex Nat. Cell Biol. 9 2007 1167 1174
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 1167-1174
-
-
Lanzuolo, C.1
Roure, V.2
Dekker, J.3
Bantignies, F.4
Orlando, V.5
-
46
-
-
84896736638
-
Pack, unpack, bend, twist, pull, push: The physical side of gene expression
-
C. Lavelle Pack, unpack, bend, twist, pull, push: the physical side of gene expression Curr. Opin. Genet. Dev. 25 2014 74 84
-
(2014)
Curr. Opin. Genet. Dev.
, vol.25
, pp. 74-84
-
-
Lavelle, C.1
-
47
-
-
84887322004
-
High-resolution mapping of the spatial organization of a bacterial chromosome
-
T.B. Le, M.V. Imakaev, L.A. Mirny, and M.T. Laub High-resolution mapping of the spatial organization of a bacterial chromosome Science 342 2013 731 734
-
(2013)
Science
, vol.342
, pp. 731-734
-
-
Le, T.B.1
Imakaev, M.V.2
Mirny, L.A.3
Laub, M.T.4
-
48
-
-
84907512608
-
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
-
F. Le Dily, D. Baù, A. Pohl, G.P. Vicent, F. Serra, D. Soronellas, G. Castellano, R.H. Wright, C. Ballare, and G. Filion Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation Genes Dev. 28 2014 2151 2162
-
(2014)
Genes Dev.
, vol.28
, pp. 2151-2162
-
-
Le Dily, F.1
Baù, D.2
Pohl, A.3
Vicent, G.P.4
Serra, F.5
Soronellas, D.6
Castellano, G.7
Wright, R.H.8
Ballare, C.9
Filion, G.10
-
49
-
-
84910619758
-
Nuclear position dictates DNA repair pathway choice
-
C. Lemaître, A. Grabarz, K. Tsouroula, L. Andronov, A. Furst, T. Pankotai, V. Heyer, M. Rogier, K.M. Attwood, and P. Kessler Nuclear position dictates DNA repair pathway choice Genes Dev. 28 2014 2450 2463
-
(2014)
Genes Dev.
, vol.28
, pp. 2450-2463
-
-
Lemaître, C.1
Grabarz, A.2
Tsouroula, K.3
Andronov, L.4
Furst, A.5
Pankotai, T.6
Heyer, V.7
Rogier, M.8
Attwood, K.M.9
Kessler, P.10
-
50
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
G. Li, X. Ruan, R.K. Auerbach, K.S. Sandhu, M. Zheng, P. Wang, H.M. Poh, Y. Goh, J. Lim, and J. Zhang Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation Cell 148 2012 84 98
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
Poh, H.M.7
Goh, Y.8
Lim, J.9
Zhang, J.10
-
51
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
E. Lieberman-Aiden, N.L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, A. Telling, I. Amit, B.R. Lajoie, P.J. Sabo, and M.O. Dorschner Comprehensive mapping of long-range interactions reveals folding principles of the human genome Science 326 2009 289 293
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
52
-
-
4143069189
-
Protein domains correlate strongly with exons in multiple eukaryotic genomes - Evidence of exon shuffling?
-
M. Liu, and A. Grigoriev Protein domains correlate strongly with exons in multiple eukaryotic genomes - evidence of exon shuffling? Trends Genet. 20 2004 399 403
-
(2004)
Trends Genet.
, vol.20
, pp. 399-403
-
-
Liu, M.1
Grigoriev, A.2
-
53
-
-
84904567038
-
3D trajectories adopted by coding and regulatory DNA elements: First-passage times for genomic interactions
-
J.S. Lucas, Y. Zhang, O.K. Dudko, and C. Murre 3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions Cell 158 2014 339 352
-
(2014)
Cell
, vol.158
, pp. 339-352
-
-
Lucas, J.S.1
Zhang, Y.2
Dudko, O.K.3
Murre, C.4
-
54
-
-
79955540235
-
Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation
-
O. Masui, I. Bonnet, P. Le Baccon, I. Brito, T. Pollex, N. Murphy, P. Hupé, E. Barillot, A.S. Belmont, and E. Heard Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation Cell 145 2011 447 458
-
(2011)
Cell
, vol.145
, pp. 447-458
-
-
Masui, O.1
Bonnet, I.2
Le Baccon, P.3
Brito, I.4
Pollex, T.5
Murphy, N.6
Hupé, P.7
Barillot, E.8
Belmont, A.S.9
Heard, E.10
-
56
-
-
84923169410
-
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. Pombe
-
T. Mizuguchi, G. Fudenberg, S. Mehta, J.M. Belton, N. Taneja, H.D. Folco, P. FitzGerald, J. Dekker, L. Mirny, J. Barrowman, and S.I. Grewal Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe Nature 516 2014 432 435
-
(2014)
Nature
, vol.516
, pp. 432-435
-
-
Mizuguchi, T.1
Fudenberg, G.2
Mehta, S.3
Belton, J.M.4
Taneja, N.5
Folco, H.D.6
Fitzgerald, P.7
Dekker, J.8
Mirny, L.9
Barrowman, J.10
Grewal, S.I.11
-
57
-
-
84883756441
-
ERNAs promote transcription by establishing chromatin accessibility at defined genomic loci
-
K. Mousavi, H. Zare, S. Dell'orso, L. Grontved, G. Gutierrez-Cruz, A. Derfoul, G.L. Hager, and V. Sartorelli eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci Mol. Cell 51 2013 606 617
-
(2013)
Mol. Cell
, vol.51
, pp. 606-617
-
-
Mousavi, K.1
Zare, H.2
Dell'Orso, S.3
Grontved, L.4
Gutierrez-Cruz, G.5
Derfoul, A.6
Hager, G.L.7
Sartorelli, V.8
-
58
-
-
84885617426
-
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
-
T. Nagano, Y. Lubling, T.J. Stevens, S. Schoenfelder, E. Yaffe, W. Dean, E.D. Laue, A. Tanay, and P. Fraser Single-cell Hi-C reveals cell-to-cell variability in chromosome structure Nature 502 2013 59 64
-
(2013)
Nature
, vol.502
, pp. 59-64
-
-
Nagano, T.1
Lubling, Y.2
Stevens, T.J.3
Schoenfelder, S.4
Yaffe, E.5
Dean, W.6
Laue, E.D.7
Tanay, A.8
Fraser, P.9
-
59
-
-
73349127026
-
Cohesin: Its roles and mechanisms
-
K. Nasmyth, and C.H. Haering Cohesin: its roles and mechanisms Annu. Rev. Genet. 43 2009 525 558
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 525-558
-
-
Nasmyth, K.1
Haering, C.H.2
-
60
-
-
84888018217
-
Organization of the mitotic chromosome
-
N. Naumova, M. Imakaev, G. Fudenberg, Y. Zhan, B.R. Lajoie, L.A. Mirny, and J. Dekker Organization of the mitotic chromosome Science 342 2013 948 953
-
(2013)
Science
, vol.342
, pp. 948-953
-
-
Naumova, N.1
Imakaev, M.2
Fudenberg, G.3
Zhan, Y.4
Lajoie, B.R.5
Mirny, L.A.6
Dekker, J.7
-
61
-
-
79960980390
-
Variegated gene expression caused by cell-specific long-range DNA interactions
-
D. Noordermeer, E. de Wit, P. Klous, H. van de Werken, M. Simonis, M. Lopez-Jones, B. Eussen, A. de Klein, R.H. Singer, and W. de Laat Variegated gene expression caused by cell-specific long-range DNA interactions Nat. Cell Biol. 13 2011 944 951
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 944-951
-
-
Noordermeer, D.1
De Wit, E.2
Klous, P.3
Van De Werken, H.4
Simonis, M.5
Lopez-Jones, M.6
Eussen, B.7
De Klein, A.8
Singer, R.H.9
De Laat, W.10
-
62
-
-
80054110441
-
The dynamic architecture of Hox gene clusters
-
D. Noordermeer, M. Leleu, E. Splinter, J. Rougemont, W. De Laat, and D. Duboule The dynamic architecture of Hox gene clusters Science 334 2011 222 225
-
(2011)
Science
, vol.334
, pp. 222-225
-
-
Noordermeer, D.1
Leleu, M.2
Splinter, E.3
Rougemont, J.4
De Laat, W.5
Duboule, D.6
-
63
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
E.P. Nora, B.R. Lajoie, E.G. Schulz, L. Giorgetti, I. Okamoto, N. Servant, T. Piolot, N.L. van Berkum, J. Meisig, and J. Sedat Spatial partitioning of the regulatory landscape of the X-inactivation centre Nature 485 2012 381 385
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
Piolot, T.7
Van Berkum, N.L.8
Meisig, J.9
Sedat, J.10
-
64
-
-
0141730403
-
The beta-globin nuclear compartment in development and erythroid differentiation
-
R.J. Palstra, B. Tolhuis, E. Splinter, R. Nijmeijer, F. Grosveld, and W. de Laat The beta-globin nuclear compartment in development and erythroid differentiation Nat. Genet. 35 2003 190 194
-
(2003)
Nat. Genet.
, vol.35
, pp. 190-194
-
-
Palstra, R.J.1
Tolhuis, B.2
Splinter, E.3
Nijmeijer, R.4
Grosveld, F.5
De Laat, W.6
-
65
-
-
84870495610
-
TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed
-
A. Papantonis, T. Kohro, S. Baboo, J.D. Larkin, B. Deng, P. Short, S. Tsutsumi, S. Taylor, Y. Kanki, and M. Kobayashi TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed EMBO J. 31 2012 4404 4414
-
(2012)
EMBO J.
, vol.31
, pp. 4404-4414
-
-
Papantonis, A.1
Kohro, T.2
Baboo, S.3
Larkin, J.D.4
Deng, B.5
Short, P.6
Tsutsumi, S.7
Taylor, S.8
Kanki, Y.9
Kobayashi, M.10
-
66
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
D. Peric-Hupkes, W. Meuleman, L. Pagie, S.W. Bruggeman, I. Solovei, W. Brugman, S. Gräf, P. Flicek, R.M. Kerkhoven, and M. van Lohuizen Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation Mol. Cell 38 2010 603 613
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
Meuleman, W.2
Pagie, L.3
Bruggeman, S.W.4
Solovei, I.5
Brugman, W.6
Gräf, S.7
Flicek, P.8
Kerkhoven, R.M.9
Van Lohuizen, M.10
-
67
-
-
0034611785
-
High mobility of proteins in the mammalian cell nucleus
-
R.D. Phair, and T. Misteli High mobility of proteins in the mammalian cell nucleus Nature 404 2000 604 609
-
(2000)
Nature
, vol.404
, pp. 604-609
-
-
Phair, R.D.1
Misteli, T.2
-
68
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
J.E. Phillips-Cremins, M.E. Sauria, A. Sanyal, T.I. Gerasimova, B.R. Lajoie, J.S. Bell, C.T. Ong, T.A. Hookway, C. Guo, and Y. Sun Architectural protein subclasses shape 3D organization of genomes during lineage commitment Cell 153 2013 1281 1295
-
(2013)
Cell
, vol.153
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
Sauria, M.E.2
Sanyal, A.3
Gerasimova, T.I.4
Lajoie, B.R.5
Bell, J.S.6
Ong, C.T.7
Hookway, T.A.8
Guo, C.9
Sun, Y.10
-
69
-
-
84911478490
-
Topologically associating domains are stable units of replication-timing regulation
-
B.D. Pope, T. Ryba, V. Dileep, F. Yue, W. Wu, O. Denas, D.L. Vera, Y. Wang, R.S. Hansen, and T.K. Canfield Topologically associating domains are stable units of replication-timing regulation Nature 515 2014 402 405
-
(2014)
Nature
, vol.515
, pp. 402-405
-
-
Pope, B.D.1
Ryba, T.2
Dileep, V.3
Yue, F.4
Wu, W.5
Denas, O.6
Vera, D.L.7
Wang, Y.8
Hansen, R.S.9
Canfield, T.K.10
-
70
-
-
79851485916
-
Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
-
E.A. Rach, D.R. Winter, A.M. Benjamin, D.L. Corcoran, T. Ni, J. Zhu, and U. Ohler Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level PLoS Genet. 7 2011 e1001274
-
(2011)
PLoS Genet.
, vol.7
, pp. e1001274
-
-
Rach, E.A.1
Winter, D.R.2
Benjamin, A.M.3
Corcoran, D.L.4
Ni, T.5
Zhu, J.6
Ohler, U.7
-
71
-
-
66149136501
-
The emergence of lineage-specific chromosomal topologies from coordinate gene regulation
-
I. Rajapakse, M.D. Perlman, D. Scalzo, C. Kooperberg, M. Groudine, and S.T. Kosak The emergence of lineage-specific chromosomal topologies from coordinate gene regulation Proc. Natl. Acad. Sci. USA 106 2009 6679 6684
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 6679-6684
-
-
Rajapakse, I.1
Perlman, M.D.2
Scalzo, D.3
Kooperberg, C.4
Groudine, M.5
Kosak, S.T.6
-
72
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
S.S. Rao, M.H. Huntley, N.C. Durand, E.K. Stamenova, I.D. Bochkov, J.T. Robinson, A.L. Sanborn, I. Machol, A.D. Omer, E.S. Lander, and E.L. Aiden A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping Cell 159 2014 1665 1680
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
Aiden, E.L.11
-
73
-
-
46149113242
-
CTCF physically links cohesin to chromatin
-
E.D. Rubio, D.J. Reiss, P.L. Welcsh, C.M. Disteche, G.N. Filippova, N.S. Baliga, R. Aebersold, J.A. Ranish, and A. Krumm CTCF physically links cohesin to chromatin Proc. Natl. Acad. Sci. USA 105 2008 8309 8314
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 8309-8314
-
-
Rubio, E.D.1
Reiss, D.J.2
Welcsh, P.L.3
Disteche, C.M.4
Filippova, G.N.5
Baliga, N.S.6
Aebersold, R.7
Ranish, J.A.8
Krumm, A.9
-
74
-
-
84897424193
-
DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells
-
H. Saad, F. Gallardo, M. Dalvai, N. Tanguy-le-Gac, D. Lane, and K. Bystricky DNA dynamics during early double-strand break processing revealed by non-intrusive imaging of living cells PLoS Genet. 10 2014 e1004187
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004187
-
-
Saad, H.1
Gallardo, F.2
Dalvai, M.3
Tanguy-Le-Gac, N.4
Lane, D.5
Bystricky, K.6
-
75
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 2012 109 113
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
76
-
-
84885847570
-
CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system
-
T. Schauer, P.C. Schwalie, A. Handley, C.E. Margulies, P. Flicek, and A.G. Ladurner CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system Cell Rep. 5 2013 271 282
-
(2013)
Cell Rep.
, vol.5
, pp. 271-282
-
-
Schauer, T.1
Schwalie, P.C.2
Handley, A.3
Margulies, C.E.4
Flicek, P.5
Ladurner, A.G.6
-
77
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
S. Schoenfelder, T. Sexton, L. Chakalova, N.F. Cope, A. Horton, S. Andrews, S. Kurukuti, J.A. Mitchell, D. Umlauf, and D.S. Dimitrova Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells Nat. Genet. 42 2010 53 61
-
(2010)
Nat. Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
Sexton, T.2
Chakalova, L.3
Cope, N.F.4
Horton, A.5
Andrews, S.6
Kurukuti, S.7
Mitchell, J.A.8
Umlauf, D.9
Dimitrova, D.S.10
-
78
-
-
84907985757
-
Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila
-
B. Schuettengruber, N. Oded Elkayam, T. Sexton, M. Entrevan, S. Stern, A. Thomas, E. Yaffe, H. Parrinello, A. Tanay, and G. Cavalli Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila Cell Rep. 9 2014 219 233
-
(2014)
Cell Rep.
, vol.9
, pp. 219-233
-
-
Schuettengruber, B.1
Oded Elkayam, N.2
Sexton, T.3
Entrevan, M.4
Stern, S.5
Thomas, A.6
Yaffe, E.7
Parrinello, H.8
Tanay, A.9
Cavalli, G.10
-
79
-
-
84890504911
-
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
-
V.C. Seitan, A.J. Faure, Y. Zhan, R.P. McCord, B.R. Lajoie, E. Ing-Simmons, B. Lenhard, L. Giorgetti, E. Heard, and A.G. Fisher Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments Genome Res. 23 2013 2066 2077
-
(2013)
Genome Res.
, vol.23
, pp. 2066-2077
-
-
Seitan, V.C.1
Faure, A.J.2
Zhan, Y.3
McCord, R.P.4
Lajoie, B.R.5
Ing-Simmons, E.6
Lenhard, B.7
Giorgetti, L.8
Heard, E.9
Fisher, A.G.10
-
80
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
T. Sexton, E. Yaffe, E. Kenigsberg, F. Bantignies, B. Leblanc, M. Hoichman, H. Parrinello, A. Tanay, and G. Cavalli Three-dimensional folding and functional organization principles of the Drosophila genome Cell 148 2012 458 472
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
81
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Y. Shen, F. Yue, D.F. McCleary, Z. Ye, L. Edsall, S. Kuan, U. Wagner, J. Dixon, L. Lee, V.V. Lobanenkov, and B. Ren A map of the cis-regulatory sequences in the mouse genome Nature 488 2012 116 120
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
82
-
-
84890566970
-
Cohesin-mediated interactions organize chromosomal domain architecture
-
S. Sofueva, E. Yaffe, W.C. Chan, D. Georgopoulou, M. Vietri Rudan, H. Mira-Bontenbal, S.M. Pollard, G.P. Schroth, A. Tanay, and S. Hadjur Cohesin-mediated interactions organize chromosomal domain architecture EMBO J. 32 2013 3119 3129
-
(2013)
EMBO J.
, vol.32
, pp. 3119-3129
-
-
Sofueva, S.1
Yaffe, E.2
Chan, W.C.3
Georgopoulou, D.4
Vietri Rudan, M.5
Mira-Bontenbal, H.6
Pollard, S.M.7
Schroth, G.P.8
Tanay, A.9
Hadjur, S.10
-
83
-
-
66749180667
-
Epigenetic temporal control of mouse Hox genes in vivo
-
N. Soshnikova, and D. Duboule Epigenetic temporal control of mouse Hox genes in vivo Science 324 2009 1320 1323
-
(2009)
Science
, vol.324
, pp. 1320-1323
-
-
Soshnikova, N.1
Duboule, D.2
-
84
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
-
E. Splinter, H. Heath, J. Kooren, R.J. Palstra, P. Klous, F. Grosveld, N. Galjart, and W. de Laat CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus Genes Dev. 20 2006 2349 2354
-
(2006)
Genes Dev.
, vol.20
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
Palstra, R.J.4
Klous, P.5
Grosveld, F.6
Galjart, N.7
De Laat, W.8
-
85
-
-
79959952919
-
The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA
-
E. Splinter, E. de Wit, E.P. Nora, P. Klous, H.J. van de Werken, Y. Zhu, L.J. Kaaij, W. van Ijcken, J. Gribnau, E. Heard, and W. de Laat The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA Genes Dev. 25 2011 1371 1383
-
(2011)
Genes Dev.
, vol.25
, pp. 1371-1383
-
-
Splinter, E.1
De Wit, E.2
Nora, E.P.3
Klous, P.4
Van De Werken, H.J.5
Zhu, Y.6
Kaaij, L.J.7
Van Ijcken, W.8
Gribnau, J.9
Heard, E.10
De Laat, W.11
-
86
-
-
84895522959
-
Functional and topological characteristics of mammalian regulatory domains
-
O. Symmons, V.V. Uslu, T. Tsujimura, S. Ruf, S. Nassari, W. Schwarzer, L. Ettwiller, and F. Spitz Functional and topological characteristics of mammalian regulatory domains Genome Res. 24 2014 390 400
-
(2014)
Genome Res.
, vol.24
, pp. 390-400
-
-
Symmons, O.1
Uslu, V.V.2
Tsujimura, T.3
Ruf, S.4
Nassari, S.5
Schwarzer, W.6
Ettwiller, L.7
Spitz, F.8
-
87
-
-
63849287611
-
The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion
-
A. Taddei, G. Van Houwe, S. Nagai, I. Erb, E. van Nimwegen, and S.M. Gasser The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion Genome Res. 19 2009 611 625
-
(2009)
Genome Res.
, vol.19
, pp. 611-625
-
-
Taddei, A.1
Van Houwe, G.2
Nagai, S.3
Erb, I.4
Van Nimwegen, E.5
Gasser, S.M.6
-
88
-
-
78650458168
-
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
-
H. Tanizawa, O. Iwasaki, A. Tanaka, J.R. Capizzi, P. Wickramasinghe, M. Lee, Z. Fu, and K. Noma Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation Nucleic Acids Res. 38 2010 8164 8177
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 8164-8177
-
-
Tanizawa, H.1
Iwasaki, O.2
Tanaka, A.3
Capizzi, J.R.4
Wickramasinghe, P.5
Lee, M.6
Fu, Z.7
Noma, K.8
-
89
-
-
84908352990
-
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: Insight into chromatin folding by polymer modelling
-
M. Tark-Dame, H. Jerabek, E.M. Manders, D.W. Heermann, and R. van Driel Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling PLoS Comput. Biol. 10 2014 e1003877
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003877
-
-
Tark-Dame, M.1
Jerabek, H.2
Manders, E.M.3
Heermann, D.W.4
Van Driel, R.5
-
90
-
-
84918539650
-
Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells
-
P. Therizols, R.S. Illingworth, C. Courilleau, S. Boyle, A.J. Wood, and W.A. Bickmore Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells Science 346 2014 1238 1242
-
(2014)
Science
, vol.346
, pp. 1238-1242
-
-
Therizols, P.1
Illingworth, R.S.2
Courilleau, C.3
Boyle, S.4
Wood, A.J.5
Bickmore, W.A.6
-
91
-
-
84863540362
-
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
-
H. Tjong, K. Gong, L. Chen, and F. Alber Physical tethering and volume exclusion determine higher-order genome organization in budding yeast Genome Res. 22 2012 1295 1305
-
(2012)
Genome Res.
, vol.22
, pp. 1295-1305
-
-
Tjong, H.1
Gong, K.2
Chen, L.3
Alber, F.4
-
92
-
-
84868335552
-
Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
-
K. Van Bortle, E. Ramos, N. Takenaka, J. Yang, J.E. Wahi, and V.G. Corces Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains Genome Res. 22 2012 2176 2187
-
(2012)
Genome Res.
, vol.22
, pp. 2176-2187
-
-
Van Bortle, K.1
Ramos, E.2
Takenaka, N.3
Yang, J.4
Wahi, J.E.5
Corces, V.G.6
-
93
-
-
79958130909
-
Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
-
A.S. Véron, C. Lemaitre, C. Gautier, V. Lacroix, and M.F. Sagot Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny BMC Genomics 12 2011 303
-
(2011)
BMC Genomics
, vol.12
, pp. 303
-
-
Véron, A.S.1
Lemaitre, C.2
Gautier, C.3
Lacroix, V.4
Sagot, M.F.5
-
94
-
-
0037416135
-
Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages
-
J. Walter, L. Schermelleh, M. Cremer, S. Tashiro, and T. Cremer Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages J. Cell Biol. 160 2003 685 697
-
(2003)
J. Cell Biol.
, vol.160
, pp. 685-697
-
-
Walter, J.1
Schermelleh, L.2
Cremer, M.3
Tashiro, S.4
Cremer, T.5
-
95
-
-
84887835943
-
Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency
-
Z. Wei, F. Gao, S. Kim, H. Yang, J. Lyu, W. An, K. Wang, and W. Lu Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency Cell Stem Cell 13 2013 36 47
-
(2013)
Cell Stem Cell
, vol.13
, pp. 36-47
-
-
Wei, Z.1
Gao, F.2
Kim, S.3
Yang, H.4
Lyu, J.5
An, W.6
Wang, K.7
Lu, W.8
-
96
-
-
84925543087
-
Enhancer - Core-promoter specificity separates developmental and housekeeping gene regulation
-
M.A. Zabidi, C.D. Arnold, K. Schernhuber, M. Pagani, M. Rath, O. Frank, and A. Stark Enhancer - core-promoter specificity separates developmental and housekeeping gene regulation Nature 518 2014 556 559
-
(2014)
Nature
, vol.518
, pp. 556-559
-
-
Zabidi, M.A.1
Arnold, C.D.2
Schernhuber, K.3
Pagani, M.4
Rath, M.5
Frank, O.6
Stark, A.7
-
97
-
-
84899628096
-
Genome reactivation after the silence in mitosis: Recapitulating mechanisms of development?
-
K.S. Zaret Genome reactivation after the silence in mitosis: recapitulating mechanisms of development? Dev. Cell 29 2014 132 134
-
(2014)
Dev. Cell
, vol.29
, pp. 132-134
-
-
Zaret, K.S.1
-
98
-
-
84893155560
-
Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming
-
H. Zhang, W. Jiao, L. Sun, J. Fan, M. Chen, H. Wang, X. Xu, A. Shen, T. Li, and B. Niu Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming Cell Stem Cell 13 2013 30 35
-
(2013)
Cell Stem Cell
, vol.13
, pp. 30-35
-
-
Zhang, H.1
Jiao, W.2
Sun, L.3
Fan, J.4
Chen, M.5
Wang, H.6
Xu, X.7
Shen, A.8
Li, T.9
Niu, B.10
-
99
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
J. Zhu, M. Adli, J.Y. Zou, G. Verstappen, M. Coyne, X. Zhang, T. Durham, M. Miri, V. Deshpande, and P.L. De Jager Genome-wide chromatin state transitions associated with developmental and environmental cues Cell 152 2013 642 654
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
Zhang, X.6
Durham, T.7
Miri, M.8
Deshpande, V.9
De Jager, P.L.10
-
100
-
-
84892934183
-
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
-
J. Zuin, J.R. Dixon, M.I. van der Reijden, Z. Ye, P. Kolovos, R.W. Brouwer, M.P. van de Corput, H.J. van de Werken, T.A. Knoch, and W.F. van IJcken Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells Proc. Natl. Acad. Sci. USA 111 2014 996 1001
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 996-1001
-
-
Zuin, J.1
Dixon, J.R.2
Van Der Reijden, M.I.3
Ye, Z.4
Kolovos, P.5
Brouwer, R.W.6
Van De Corput, M.P.7
Van De Werken, H.J.8
Knoch, T.A.9
Van Ijcken, W.F.10
|